Wall clock time and date at job start Tue Mar 31 2020 13:05:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35551 * 117.00053 * 2 1 4 4 N 1.33039 * 120.46361 * 0.02562 * 3 2 1 5 5 C 1.31741 * 120.91142 * 180.02562 * 4 3 2 6 6 N 1.31757 * 121.89422 * 359.97438 * 5 4 3 7 7 C 1.33127 * 120.82903 * 0.02562 * 6 5 4 8 8 N 1.38606 * 120.49614 * 180.02562 * 7 6 5 9 9 C 1.46902 * 111.00075 * 53.81136 * 8 7 6 10 10 C 1.50696 * 109.47108 * 163.66003 * 9 8 7 11 11 H 1.08007 * 119.99534 * 359.97438 * 10 9 8 12 12 C 1.37876 * 120.00272 * 179.72509 * 10 9 8 13 13 N 1.31511 * 120.00136 * 179.97438 * 12 10 9 14 14 Si 1.86802 * 119.99805 * 0.02562 * 12 10 9 15 15 H 1.48502 * 109.46765 * 89.99838 * 14 12 10 16 16 H 1.48497 * 109.47050 * 209.99846 * 14 12 10 17 17 H 1.48503 * 109.46988 * 329.99964 * 14 12 10 18 18 C 1.46901 * 110.99764 * 289.85786 * 8 7 6 19 19 C 1.54275 * 110.02898 * 66.13083 * 18 8 7 20 20 C 1.54888 * 104.19451 * 217.10226 * 19 18 8 21 21 C 1.54896 * 102.74833 * 37.94315 * 20 19 18 22 22 C 1.53871 * 110.03485 * 308.96815 * 18 8 7 23 23 C 1.38876 * 120.46580 * 180.28476 * 3 2 1 24 24 N 1.48019 * 120.85697 * 0.02562 * 23 3 2 25 25 O 1.21799 * 120.00424 * 265.23759 * 24 23 3 26 26 O 1.21801 * 119.99597 * 85.24060 * 24 23 3 27 27 H 1.09004 * 109.47455 * 59.99294 * 1 2 3 28 28 H 1.08997 * 109.47428 * 180.02562 * 1 2 3 29 29 H 1.09008 * 109.47118 * 299.99857 * 1 2 3 30 30 H 1.08001 * 119.05368 * 180.02562 * 5 4 3 31 31 H 1.09004 * 109.46970 * 43.66081 * 9 8 7 32 32 H 1.08998 * 109.47312 * 283.66333 * 9 8 7 33 33 H 0.97001 * 119.99858 * 179.97438 * 13 12 10 34 34 H 1.08993 * 110.01872 * 187.57107 * 18 8 7 35 35 H 1.08993 * 110.48641 * 335.78176 * 19 18 8 36 36 H 1.08995 * 110.48257 * 98.42970 * 19 18 8 37 37 H 1.09001 * 110.75960 * 279.63685 * 20 19 18 38 38 H 1.08997 * 110.91780 * 156.32849 * 20 19 18 39 39 H 1.09002 * 110.48735 * 203.37556 * 21 20 19 40 40 H 1.09004 * 110.48350 * 80.73623 * 21 20 19 41 41 H 1.08995 * 110.03086 * 238.57338 * 22 18 8 42 42 H 1.09000 * 110.02937 * 359.97438 * 22 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0444 1.2078 0.0000 4 7 1.3288 2.3294 0.0005 5 6 1.9178 3.5078 0.0000 6 7 3.2296 3.6305 -0.0005 7 6 4.0153 2.5558 -0.0011 8 7 5.3946 2.6928 -0.0011 9 6 5.8385 3.5502 1.1062 10 6 7.3172 3.3611 1.3261 11 1 7.8718 2.6726 0.7057 12 6 7.9633 4.0709 2.3160 13 7 9.2537 3.9056 2.5083 14 14 7.0053 5.2664 3.3849 15 1 6.4849 4.5544 4.5797 16 1 7.8998 6.3702 3.8169 17 1 5.8697 5.8247 2.6077 18 6 5.8722 3.2091 -1.2908 19 6 5.3689 4.6521 -1.5014 20 6 5.0564 4.7279 -3.0166 21 6 4.4574 3.3305 -3.3124 22 6 5.2926 2.3689 -2.4422 23 6 3.4306 1.2917 -0.0059 24 7 4.2652 0.0693 -0.0130 25 8 4.6856 -0.3872 1.0351 26 8 4.5315 -0.4801 -1.0669 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5138 0.8901 30 1 1.3077 4.3990 0.0009 31 1 5.2986 3.2800 2.0138 32 1 5.6380 4.5931 0.8611 33 1 9.7083 4.4052 3.2044 34 1 6.9614 3.1845 -1.3222 35 1 4.4667 4.8306 -0.9165 36 1 6.1452 5.3695 -1.2357 37 1 5.9687 4.8866 -3.5917 38 1 4.3287 5.5121 -3.2251 39 1 4.5684 3.0835 -4.3683 40 1 3.4079 3.2957 -3.0199 41 1 6.1006 1.9372 -3.0328 42 1 4.6572 1.5778 -2.0440 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166534088.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:05:09 Heat of formation + Delta-G solvation = 14.677691 kcal Electronic energy + Delta-G solvation = -29377.496822 eV Core-core repulsion = 25361.791269 eV Total energy + Delta-G solvation = -4015.705554 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.70606 -42.52177 -40.95972 -39.50492 -37.63643 -36.73134 -34.98092 -34.08317 -33.53912 -30.41403 -29.49998 -28.95650 -28.51475 -27.52005 -25.11615 -24.58167 -23.53721 -21.60346 -21.45717 -20.59339 -20.16657 -19.96545 -19.39418 -18.92995 -18.07719 -17.87245 -17.40794 -16.95324 -16.59599 -16.24191 -15.92560 -15.56086 -15.33088 -15.05158 -14.65352 -14.42881 -14.03889 -13.72625 -13.30633 -13.11407 -13.03341 -12.96867 -12.82375 -12.64458 -12.35361 -12.31139 -12.12751 -12.06382 -11.99237 -11.94767 -11.82631 -11.67415 -11.60798 -11.55540 -10.95920 -10.85834 -10.70289 -9.82939 -8.34862 -6.40844 -0.99512 -0.63987 -0.61020 0.18736 1.14728 1.30221 1.31004 1.41453 2.03306 2.09378 2.27549 2.65537 2.73297 2.97480 3.23054 3.28089 3.56395 3.68255 3.89371 4.20041 4.25323 4.26288 4.41132 4.47041 4.48550 4.54835 4.59302 4.63934 4.69463 4.79919 4.88468 4.99415 5.01796 5.10286 5.12053 5.17054 5.27411 5.36962 5.45558 5.49285 5.66977 5.87772 6.33010 6.39103 6.41611 6.63469 7.21188 8.81485 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.012272 B = 0.005642 C = 0.005118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2281.107233 B = 4961.554642 C = 5469.307189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.310 6.310 3 C 0.423 3.577 4 N -0.550 5.550 5 C 0.384 3.616 6 N -0.554 5.554 7 C 0.450 3.550 8 N -0.512 5.512 9 C 0.192 3.808 10 C -0.521 4.521 11 H 0.036 0.964 12 C 0.020 3.980 13 N -0.938 5.938 14 Si 0.938 3.062 15 H -0.271 1.271 16 H -0.274 1.274 17 H -0.242 1.242 18 C 0.092 3.908 19 C -0.165 4.165 20 C -0.107 4.107 21 C -0.108 4.108 22 C -0.135 4.135 23 C -0.173 4.173 24 N 0.054 4.946 25 O -0.175 6.175 26 O -0.126 6.126 27 H 0.082 0.918 28 H 0.133 0.867 29 H 0.077 0.923 30 H 0.270 0.730 31 H 0.012 0.988 32 H 0.032 0.968 33 H 0.270 0.730 34 H 0.074 0.926 35 H 0.107 0.893 36 H 0.054 0.946 37 H 0.071 0.929 38 H 0.087 0.913 39 H 0.088 0.912 40 H 0.055 0.945 41 H 0.077 0.923 42 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.430 1.138 -9.914 24.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.213 6.213 3 C 0.234 3.766 4 N -0.283 5.283 5 C 0.098 3.902 6 N -0.277 5.277 7 C 0.214 3.786 8 N -0.236 5.236 9 C 0.067 3.933 10 C -0.559 4.559 11 H 0.054 0.946 12 C -0.179 4.179 13 N -0.578 5.578 14 Si 0.761 3.239 15 H -0.197 1.197 16 H -0.199 1.199 17 H -0.165 1.165 18 C -0.013 4.013 19 C -0.204 4.204 20 C -0.145 4.145 21 C -0.145 4.145 22 C -0.173 4.173 23 C -0.263 4.263 24 N 0.583 4.417 25 O -0.390 6.390 26 O -0.355 6.355 27 H 0.101 0.899 28 H 0.151 0.849 29 H 0.096 0.904 30 H 0.285 0.715 31 H 0.030 0.970 32 H 0.049 0.951 33 H 0.079 0.921 34 H 0.093 0.907 35 H 0.125 0.875 36 H 0.073 0.927 37 H 0.090 0.910 38 H 0.105 0.895 39 H 0.106 0.894 40 H 0.074 0.926 41 H 0.095 0.905 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -22.954 1.792 -9.658 24.967 hybrid contribution 0.912 -0.259 0.883 1.295 sum -22.042 1.534 -8.775 23.774 Atomic orbital electron populations 1.23550 0.72121 1.06430 1.04389 1.86339 1.27715 1.22352 1.84885 1.19468 0.85116 0.87823 0.84153 1.68677 1.38228 0.97711 1.23661 1.26182 0.87751 0.95316 0.80939 1.69243 1.07801 1.30332 1.20353 1.19870 0.92074 0.85560 0.81092 1.60242 1.01963 1.54008 1.07346 1.19930 0.94960 0.91415 0.86962 1.20964 0.92173 1.24667 1.18075 0.94566 1.25709 0.95664 0.98473 0.98077 1.70022 1.10531 1.43306 1.33940 0.85850 0.79600 0.79000 0.79454 1.19673 1.19934 1.16542 1.22465 0.99794 0.94519 0.84542 1.23348 1.02864 0.95033 0.99107 1.22375 1.01253 0.96945 0.93915 1.22257 0.97885 0.94473 0.99909 1.22488 1.00449 0.98165 0.96193 1.21786 0.90061 0.86834 1.27614 1.42856 0.98449 1.00517 0.99878 1.94578 1.55029 1.67505 1.21889 1.94438 1.60034 1.60358 1.20674 0.89896 0.84861 0.90399 0.71483 0.97003 0.95056 0.92097 0.90737 0.87474 0.92724 0.91028 0.89457 0.89386 0.92573 0.90460 0.92710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 10.41 113.37 1.18 1.56 16 2 O -0.31 -7.78 10.30 -88.57 -0.91 -8.69 16 3 C 0.42 11.79 7.52 84.66 0.64 12.43 16 4 N -0.55 -11.70 9.38 -313.03 -2.94 -14.64 16 5 C 0.38 7.43 12.28 180.91 2.22 9.65 16 6 N -0.55 -15.79 7.18 -197.78 -1.42 -17.21 16 7 C 0.45 16.22 4.00 133.01 0.53 16.75 16 8 N -0.51 -22.09 4.30 -677.85 -2.92 -25.00 16 9 C 0.19 9.29 3.27 85.56 0.28 9.57 16 10 C -0.52 -30.42 9.22 25.60 0.24 -30.18 16 11 H 0.04 2.40 7.79 -2.91 -0.02 2.37 16 12 C 0.02 1.14 5.47 84.65 0.46 1.61 16 13 N -0.94 -58.65 13.96 21.45 0.30 -58.35 16 14 Si 0.94 43.48 27.47 68.60 1.88 45.36 16 15 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 16 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 17 H -0.24 -10.24 6.53 99.48 0.65 -9.59 16 18 C 0.09 3.53 2.92 45.64 0.13 3.67 16 19 C -0.16 -5.27 4.75 31.67 0.15 -5.12 16 20 C -0.11 -2.53 6.91 31.89 0.22 -2.31 16 21 C -0.11 -2.56 6.83 31.67 0.22 -2.34 16 22 C -0.13 -4.31 6.00 31.32 0.19 -4.12 16 23 C -0.17 -6.14 5.15 36.78 0.19 -5.95 16 24 N 0.05 2.22 3.90 -45.50 -0.18 2.04 16 25 O -0.18 -7.94 19.26 18.89 0.36 -7.58 16 26 O -0.13 -5.02 17.74 18.88 0.33 -4.68 16 27 H 0.08 0.92 8.12 -2.39 -0.02 0.90 16 28 H 0.13 1.10 8.14 -2.39 -0.02 1.09 16 29 H 0.08 0.94 8.12 -2.38 -0.02 0.92 16 30 H 0.27 2.01 8.06 -2.91 -0.02 1.99 16 31 H 0.01 0.60 7.41 -2.39 -0.02 0.58 16 32 H 0.03 1.46 5.48 -2.39 -0.01 1.45 16 33 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 34 H 0.07 3.34 7.45 -2.39 -0.02 3.32 16 35 H 0.11 3.36 4.64 -2.39 -0.01 3.35 16 36 H 0.05 1.91 8.13 -2.39 -0.02 1.89 16 37 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 39 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 40 H 0.06 1.29 8.14 -2.38 -0.02 1.27 16 41 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 42 H 0.05 1.90 4.12 -2.39 -0.01 1.89 16 Total: -1.00 -75.30 345.42 2.17 -73.13 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: 1.00 Total: 10.42 kcal Atomic # 6 Polarization: -1.45 SS G_CDS: 6.65 Total: 5.20 kcal Atomic # 7 Polarization: -106.01 SS G_CDS: -7.15 Total: -113.16 kcal Atomic # 8 Polarization: -20.73 SS G_CDS: -0.21 Total: -20.95 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 1.88 Total: 45.36 kcal Total: -75.30 2.17 -73.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166534088.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.806 kcal (2) G-P(sol) polarization free energy of solvation -75.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.128 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds