Wall clock time and date at job start Tue Mar 31 2020 13:05:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35507 * 116.99631 * 2 1 4 4 N 1.32761 * 120.46787 * 0.02562 * 3 2 1 5 5 C 1.32458 * 120.64471 * 180.02562 * 4 3 2 6 6 N 1.38395 * 119.18458 * 179.97438 * 5 4 3 7 7 C 1.46498 * 120.00246 * 359.72756 * 6 5 4 8 8 C 1.50702 * 109.47425 * 89.99689 * 7 6 5 9 9 H 1.07999 * 119.99972 * 0.02562 * 8 7 6 10 10 C 1.37875 * 119.99945 * 179.97438 * 8 7 6 11 11 N 1.31515 * 120.00104 * 0.02562 * 10 8 7 12 12 Si 1.86806 * 119.99887 * 180.02562 * 10 8 7 13 13 H 1.48501 * 109.46962 * 59.99982 * 12 10 8 14 14 H 1.48504 * 109.46839 * 179.97438 * 12 10 8 15 15 H 1.48496 * 109.47142 * 300.00289 * 12 10 8 16 16 C 1.46499 * 119.99931 * 180.02562 * 6 5 4 17 17 C 1.54261 * 110.03570 * 57.16608 * 16 6 5 18 18 C 1.54889 * 104.20127 * 217.10524 * 17 16 6 19 19 C 1.54896 * 102.74428 * 37.94350 * 18 17 16 20 20 C 1.53879 * 110.03460 * 299.99787 * 16 6 5 21 21 N 1.32486 * 121.62837 * 0.25786 * 5 4 3 22 22 C 1.32434 * 120.88487 * 359.47706 * 21 5 4 23 23 C 1.38246 * 119.26597 * 0.51071 * 22 21 5 24 24 N 1.48015 * 120.74884 * 179.72394 * 23 22 21 25 25 O 1.21800 * 119.99885 * 0.02562 * 24 23 22 26 26 O 1.21798 * 120.00200 * 180.02562 * 24 23 22 27 27 H 1.08997 * 109.47183 * 299.99526 * 1 2 3 28 28 H 1.08993 * 109.47197 * 59.99903 * 1 2 3 29 29 H 1.09004 * 109.46829 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47489 * 210.00006 * 7 6 5 31 31 H 1.08996 * 109.47047 * 329.99718 * 7 6 5 32 32 H 0.96996 * 120.00019 * 180.02562 * 11 10 8 33 33 H 1.09000 * 110.02156 * 178.61332 * 16 6 5 34 34 H 1.09003 * 110.48658 * 335.78550 * 17 16 6 35 35 H 1.09003 * 110.48662 * 98.42567 * 17 16 6 36 36 H 1.08998 * 110.75441 * 279.63011 * 18 17 16 37 37 H 1.09000 * 110.75842 * 156.25123 * 18 17 16 38 38 H 1.09004 * 110.48332 * 203.38503 * 19 18 17 39 39 H 1.08999 * 110.49077 * 80.73787 * 19 18 17 40 40 H 1.08993 * 110.03806 * 238.57172 * 20 16 6 41 41 H 1.09007 * 110.03010 * 0.02562 * 20 16 6 42 42 H 1.08002 * 120.37073 * 180.25614 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0442 1.2074 0.0000 4 7 1.3302 2.3267 0.0005 5 6 1.9278 3.5088 0.0000 6 7 1.1540 4.6562 0.0000 7 6 -0.3074 4.5542 -0.0054 8 6 -0.8137 4.5157 1.4135 9 1 -0.1166 4.5629 2.2370 10 6 -2.1669 4.4212 1.6603 11 7 -3.0158 4.3641 0.6575 12 14 -2.7945 4.3742 3.4191 13 1 -2.3872 5.6165 4.1234 14 1 -4.2760 4.2719 3.4135 15 1 -2.2191 3.1974 4.1187 16 6 1.7963 5.9728 -0.0011 17 6 2.7333 6.1027 -1.2196 18 6 3.9422 6.9101 -0.6850 19 6 4.1201 6.3502 0.7483 20 6 2.6780 6.1304 1.2502 21 7 3.2480 3.6198 -0.0061 22 6 4.0207 2.5443 -0.0016 23 6 3.4356 1.2918 -0.0011 24 7 4.2678 0.0678 -0.0022 25 8 5.4825 0.1573 -0.0031 26 8 3.7380 -1.0290 -0.0022 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.7301 5.4179 -0.5187 31 1 -0.6061 3.6423 -0.5226 32 1 -3.9678 4.2980 0.8311 33 1 1.0397 6.7571 -0.0257 34 1 3.0532 5.1184 -1.5615 35 1 2.2386 6.6452 -2.0252 36 1 3.7136 7.9755 -0.6579 37 1 4.8307 6.7196 -1.2870 38 1 4.6372 7.0735 1.3789 39 1 4.6639 5.4059 0.7243 40 1 2.3498 6.9914 1.8323 41 1 2.6283 5.2269 1.8581 42 1 5.0960 2.6445 -0.0025 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166534685.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:05:13 Heat of formation + Delta-G solvation = 21.321078 kcal Electronic energy + Delta-G solvation = -28628.593248 eV Core-core repulsion = 24613.175773 eV Total energy + Delta-G solvation = -4015.417475 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.91972 -40.91939 -39.06516 -37.87118 -36.04790 -35.29479 -33.08557 -32.86347 -31.53971 -28.50795 -28.35496 -27.44159 -27.22284 -25.34532 -23.75964 -23.24042 -21.94514 -20.58023 -20.10843 -19.06005 -18.75909 -17.99404 -17.26351 -17.23987 -16.72623 -15.99078 -15.91684 -15.77342 -14.92384 -14.65790 -14.53199 -14.18605 -13.78305 -13.56919 -13.03501 -12.80739 -12.27550 -11.93642 -11.87034 -11.73557 -11.52941 -11.36554 -11.15256 -11.04469 -10.90415 -10.87770 -10.83207 -10.73218 -10.67261 -10.62000 -10.38522 -10.31443 -10.22539 -9.86904 -9.46275 -9.16522 -8.68303 -7.73164 -6.30427 -4.37427 0.29805 1.20911 1.72658 1.82236 2.73290 3.04724 3.14571 3.20278 3.23635 3.79230 4.01850 4.21130 4.50057 4.61705 4.79493 4.84224 4.88526 5.03870 5.13264 5.45178 5.53835 5.55937 5.58559 5.68433 5.75308 5.77738 5.88161 5.91692 6.07475 6.09648 6.23287 6.41601 6.44369 6.57214 6.64753 6.66146 6.79619 6.93436 7.09416 7.29841 7.61362 7.74751 7.87464 8.11333 8.29533 8.66235 9.28388 10.76540 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.009689 B = 0.005952 C = 0.004089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2889.304194 B = 4703.195367 C = 6846.809355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.274 6.274 3 C 0.463 3.537 4 N -0.587 5.587 5 C 0.621 3.379 6 N -0.520 5.520 7 C 0.247 3.753 8 C -0.530 4.530 9 H 0.058 0.942 10 C 0.068 3.932 11 N -0.890 5.890 12 Si 0.898 3.102 13 H -0.275 1.275 14 H -0.284 1.284 15 H -0.276 1.276 16 C 0.151 3.849 17 C -0.131 4.131 18 C -0.114 4.114 19 C -0.113 4.113 20 C -0.121 4.121 21 N -0.566 5.566 22 C 0.282 3.718 23 C -0.257 4.257 24 N 0.067 4.933 25 O -0.203 6.203 26 O -0.164 6.164 27 H 0.073 0.927 28 H 0.068 0.932 29 H 0.102 0.898 30 H 0.042 0.958 31 H 0.054 0.946 32 H 0.267 0.733 33 H 0.099 0.901 34 H 0.080 0.920 35 H 0.060 0.940 36 H 0.061 0.939 37 H 0.063 0.937 38 H 0.053 0.947 39 H 0.077 0.923 40 H 0.064 0.936 41 H 0.066 0.934 42 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.132 1.245 -2.904 10.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.174 6.174 3 C 0.267 3.733 4 N -0.328 5.328 5 C 0.267 3.733 6 N -0.224 5.224 7 C 0.128 3.872 8 C -0.569 4.569 9 H 0.076 0.924 10 C -0.136 4.136 11 N -0.528 5.528 12 Si 0.725 3.275 13 H -0.201 1.201 14 H -0.210 1.210 15 H -0.202 1.202 16 C 0.047 3.953 17 C -0.169 4.169 18 C -0.152 4.152 19 C -0.151 4.151 20 C -0.159 4.159 21 N -0.293 5.293 22 C 0.107 3.893 23 C -0.355 4.355 24 N 0.577 4.423 25 O -0.407 6.407 26 O -0.379 6.379 27 H 0.092 0.908 28 H 0.086 0.914 29 H 0.121 0.879 30 H 0.059 0.941 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.117 0.883 34 H 0.099 0.901 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.072 0.928 39 H 0.096 0.904 40 H 0.082 0.918 41 H 0.084 0.916 42 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges 8.788 2.611 -2.957 9.633 hybrid contribution -0.251 -1.001 1.062 1.481 sum 8.537 1.610 -1.895 8.892 Atomic orbital electron populations 1.23142 0.75419 1.03538 1.04160 1.86478 1.24319 1.22332 1.84254 1.19355 0.86271 0.86212 0.81439 1.68100 1.37941 0.96696 1.30100 1.19273 0.84720 0.85831 0.83479 1.47733 1.08331 1.00738 1.65602 1.19683 0.69789 0.99352 0.98384 1.21249 0.92028 1.52122 0.91511 0.92423 1.24874 0.96496 0.94683 0.97504 1.69898 1.02934 1.49252 1.30752 0.86561 0.77780 0.78816 0.84346 1.20091 1.20959 1.20195 1.21885 0.95049 0.83094 0.95231 1.22788 0.95909 1.01412 0.96813 1.22339 0.97566 0.98652 0.96639 1.22278 0.96455 1.00953 0.95379 1.22400 0.94850 1.01819 0.96854 1.68664 1.04250 1.30017 1.26360 1.22770 1.01287 0.83739 0.81472 1.21615 0.89180 0.87919 1.36806 1.42896 1.00709 1.01929 0.96739 1.94467 0.96163 1.93780 1.56323 1.94553 1.76018 1.13363 1.53970 0.90778 0.91352 0.87939 0.94057 0.92814 0.92348 0.88262 0.90140 0.92085 0.92046 0.91830 0.92777 0.90413 0.91769 0.91557 0.79332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 10.41 101.05 1.05 1.53 16 2 O -0.27 -4.73 8.65 -39.71 -0.34 -5.07 16 3 C 0.46 8.37 7.51 -16.72 -0.13 8.24 16 4 N -0.59 -11.38 8.05 -13.99 -0.11 -11.50 16 5 C 0.62 11.43 7.06 -322.88 -2.28 9.15 16 6 N -0.52 -9.80 2.48 -168.54 -0.42 -10.22 16 7 C 0.25 5.56 5.14 -5.19 -0.03 5.54 16 8 C -0.53 -13.26 9.39 -34.44 -0.32 -13.59 16 9 H 0.06 1.48 7.81 -52.49 -0.41 1.07 16 10 C 0.07 1.74 5.46 -17.82 -0.10 1.64 16 11 N -0.89 -23.75 13.29 55.43 0.74 -23.02 16 12 Si 0.90 20.17 29.54 -169.99 -5.02 15.15 16 13 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 14 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 15 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 16 C 0.15 2.36 3.36 -66.81 -0.22 2.14 16 17 C -0.13 -1.72 6.03 -25.08 -0.15 -1.88 16 18 C -0.11 -1.25 6.91 -24.74 -0.17 -1.42 16 19 C -0.11 -1.34 6.34 -25.07 -0.16 -1.50 16 20 C -0.12 -1.75 5.77 -25.61 -0.15 -1.90 16 21 N -0.57 -8.80 4.97 -14.00 -0.07 -8.87 16 22 C 0.28 4.04 10.81 -17.29 -0.19 3.85 16 23 C -0.26 -4.29 6.91 -79.51 -0.55 -4.84 16 24 N 0.07 1.17 4.45 34.17 0.15 1.32 16 25 O -0.20 -3.41 18.54 -29.46 -0.55 -3.96 16 26 O -0.16 -3.05 17.39 -36.31 -0.63 -3.68 16 27 H 0.07 1.22 8.12 -51.93 -0.42 0.80 16 28 H 0.07 1.04 8.12 -51.93 -0.42 0.62 16 29 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.04 0.97 7.92 -51.93 -0.41 0.55 16 31 H 0.05 1.32 7.34 -51.93 -0.38 0.94 16 32 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 33 H 0.10 1.56 7.82 -51.93 -0.41 1.16 16 34 H 0.08 1.17 5.92 -51.93 -0.31 0.86 16 35 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 38 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.08 0.95 6.96 -51.93 -0.36 0.59 16 40 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.07 1.12 7.13 -51.92 -0.37 0.75 16 42 H 0.19 2.06 7.69 -52.49 -0.40 1.65 16 LS Contribution 351.77 15.07 5.30 5.30 Total: -1.00 -27.61 351.77 -9.91 -37.52 By element: Atomic # 1 Polarization: 5.63 SS G_CDS: -5.57 Total: 0.06 kcal Atomic # 6 Polarization: 10.35 SS G_CDS: -3.39 Total: 6.96 kcal Atomic # 7 Polarization: -52.57 SS G_CDS: 0.29 Total: -52.28 kcal Atomic # 8 Polarization: -11.19 SS G_CDS: -1.52 Total: -12.71 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.15 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -27.61 -9.91 -37.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166534685.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.839 kcal (2) G-P(sol) polarization free energy of solvation -27.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.518 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds