Wall clock time and date at job start Tue Mar 31 2020 13:05:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35507 * 116.99631 * 2 1 4 4 N 1.32761 * 120.46787 * 0.02562 * 3 2 1 5 5 C 1.32458 * 120.64471 * 180.02562 * 4 3 2 6 6 N 1.38395 * 119.18458 * 179.97438 * 5 4 3 7 7 C 1.46498 * 120.00246 * 359.72756 * 6 5 4 8 8 C 1.50702 * 109.47425 * 89.99689 * 7 6 5 9 9 H 1.07999 * 119.99972 * 0.02562 * 8 7 6 10 10 C 1.37875 * 119.99945 * 179.97438 * 8 7 6 11 11 N 1.31515 * 120.00104 * 0.02562 * 10 8 7 12 12 Si 1.86806 * 119.99887 * 180.02562 * 10 8 7 13 13 H 1.48501 * 109.46962 * 59.99982 * 12 10 8 14 14 H 1.48504 * 109.46839 * 179.97438 * 12 10 8 15 15 H 1.48496 * 109.47142 * 300.00289 * 12 10 8 16 16 C 1.46499 * 119.99931 * 180.02562 * 6 5 4 17 17 C 1.54261 * 110.03570 * 57.16608 * 16 6 5 18 18 C 1.54889 * 104.20127 * 217.10524 * 17 16 6 19 19 C 1.54896 * 102.74428 * 37.94350 * 18 17 16 20 20 C 1.53879 * 110.03460 * 299.99787 * 16 6 5 21 21 N 1.32486 * 121.62837 * 0.25786 * 5 4 3 22 22 C 1.32434 * 120.88487 * 359.47706 * 21 5 4 23 23 C 1.38246 * 119.26597 * 0.51071 * 22 21 5 24 24 N 1.48015 * 120.74884 * 179.72394 * 23 22 21 25 25 O 1.21800 * 119.99885 * 0.02562 * 24 23 22 26 26 O 1.21798 * 120.00200 * 180.02562 * 24 23 22 27 27 H 1.08997 * 109.47183 * 299.99526 * 1 2 3 28 28 H 1.08993 * 109.47197 * 59.99903 * 1 2 3 29 29 H 1.09004 * 109.46829 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47489 * 210.00006 * 7 6 5 31 31 H 1.08996 * 109.47047 * 329.99718 * 7 6 5 32 32 H 0.96996 * 120.00019 * 180.02562 * 11 10 8 33 33 H 1.09000 * 110.02156 * 178.61332 * 16 6 5 34 34 H 1.09003 * 110.48658 * 335.78550 * 17 16 6 35 35 H 1.09003 * 110.48662 * 98.42567 * 17 16 6 36 36 H 1.08998 * 110.75441 * 279.63011 * 18 17 16 37 37 H 1.09000 * 110.75842 * 156.25123 * 18 17 16 38 38 H 1.09004 * 110.48332 * 203.38503 * 19 18 17 39 39 H 1.08999 * 110.49077 * 80.73787 * 19 18 17 40 40 H 1.08993 * 110.03806 * 238.57172 * 20 16 6 41 41 H 1.09007 * 110.03010 * 0.02562 * 20 16 6 42 42 H 1.08002 * 120.37073 * 180.25614 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0442 1.2074 0.0000 4 7 1.3302 2.3267 0.0005 5 6 1.9278 3.5088 0.0000 6 7 1.1540 4.6562 0.0000 7 6 -0.3074 4.5542 -0.0054 8 6 -0.8137 4.5157 1.4135 9 1 -0.1166 4.5629 2.2370 10 6 -2.1669 4.4212 1.6603 11 7 -3.0158 4.3641 0.6575 12 14 -2.7945 4.3742 3.4191 13 1 -2.3872 5.6165 4.1234 14 1 -4.2760 4.2719 3.4135 15 1 -2.2191 3.1974 4.1187 16 6 1.7963 5.9728 -0.0011 17 6 2.7333 6.1027 -1.2196 18 6 3.9422 6.9101 -0.6850 19 6 4.1201 6.3502 0.7483 20 6 2.6780 6.1304 1.2502 21 7 3.2480 3.6198 -0.0061 22 6 4.0207 2.5443 -0.0016 23 6 3.4356 1.2918 -0.0011 24 7 4.2678 0.0678 -0.0022 25 8 5.4825 0.1573 -0.0031 26 8 3.7380 -1.0290 -0.0022 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.7301 5.4179 -0.5187 31 1 -0.6061 3.6423 -0.5226 32 1 -3.9678 4.2980 0.8311 33 1 1.0397 6.7571 -0.0257 34 1 3.0532 5.1184 -1.5615 35 1 2.2386 6.6452 -2.0252 36 1 3.7136 7.9755 -0.6579 37 1 4.8307 6.7196 -1.2870 38 1 4.6372 7.0735 1.3789 39 1 4.6639 5.4059 0.7243 40 1 2.3498 6.9914 1.8323 41 1 2.6283 5.2269 1.8581 42 1 5.0960 2.6445 -0.0025 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166534685.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:05:12 Heat of formation + Delta-G solvation = 9.366326 kcal Electronic energy + Delta-G solvation = -28629.111645 eV Core-core repulsion = 24613.175773 eV Total energy + Delta-G solvation = -4015.935872 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.28720 -42.28967 -40.37160 -39.11317 -37.42771 -36.68819 -34.79957 -34.34037 -32.96071 -29.92671 -29.54334 -28.73075 -28.56572 -26.86776 -25.13610 -24.77550 -23.46383 -21.61577 -21.27214 -20.41887 -20.13553 -19.33884 -18.80178 -18.61890 -18.48801 -17.37448 -17.29026 -17.05377 -16.46543 -16.01408 -15.82661 -15.43412 -15.15377 -14.78005 -14.58918 -14.09205 -13.64128 -13.49400 -13.43416 -13.04470 -12.94683 -12.79229 -12.71850 -12.54047 -12.47874 -12.12830 -12.11722 -12.00483 -11.92938 -11.88226 -11.80650 -11.65515 -11.49917 -11.32121 -10.84893 -10.69557 -10.48605 -9.22264 -8.26787 -6.41030 -1.06147 -0.10250 0.34893 0.45681 1.34107 1.35150 1.39476 1.44003 1.68216 2.31483 2.43948 2.73356 3.03087 3.13088 3.32987 3.57689 3.75801 3.79336 4.05488 4.26737 4.30081 4.39551 4.52265 4.58808 4.63662 4.69227 4.70572 4.88257 4.96009 5.02250 5.11366 5.16615 5.22887 5.29766 5.35812 5.38108 5.43355 5.54651 5.67753 5.68778 5.84852 5.95351 6.25140 6.63042 6.72906 6.93740 7.28349 8.78143 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.009689 B = 0.005952 C = 0.004089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2889.304194 B = 4703.195367 C = 6846.809355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.280 6.280 3 C 0.452 3.548 4 N -0.617 5.617 5 C 0.614 3.386 6 N -0.529 5.529 7 C 0.266 3.734 8 C -0.534 4.534 9 H 0.046 0.954 10 C 0.025 3.975 11 N -0.918 5.918 12 Si 0.953 3.047 13 H -0.269 1.269 14 H -0.279 1.279 15 H -0.280 1.280 16 C 0.142 3.858 17 C -0.125 4.125 18 C -0.104 4.104 19 C -0.106 4.106 20 C -0.118 4.118 21 N -0.550 5.550 22 C 0.296 3.704 23 C -0.261 4.261 24 N 0.068 4.932 25 O -0.169 6.169 26 O -0.205 6.205 27 H 0.053 0.947 28 H 0.060 0.940 29 H 0.139 0.861 30 H 0.029 0.971 31 H 0.028 0.972 32 H 0.268 0.732 33 H 0.091 0.909 34 H 0.068 0.932 35 H 0.067 0.933 36 H 0.075 0.925 37 H 0.081 0.919 38 H 0.073 0.927 39 H 0.076 0.924 40 H 0.068 0.932 41 H 0.038 0.962 42 H 0.233 0.767 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.356 2.105 -2.604 12.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.181 6.181 3 C 0.258 3.742 4 N -0.360 5.360 5 C 0.260 3.740 6 N -0.234 5.234 7 C 0.145 3.855 8 C -0.573 4.573 9 H 0.065 0.935 10 C -0.176 4.176 11 N -0.557 5.557 12 Si 0.778 3.222 13 H -0.194 1.194 14 H -0.204 1.204 15 H -0.205 1.205 16 C 0.039 3.961 17 C -0.163 4.163 18 C -0.141 4.141 19 C -0.143 4.143 20 C -0.156 4.156 21 N -0.276 5.276 22 C 0.121 3.879 23 C -0.359 4.359 24 N 0.577 4.423 25 O -0.383 6.383 26 O -0.409 6.409 27 H 0.071 0.929 28 H 0.078 0.922 29 H 0.157 0.843 30 H 0.047 0.953 31 H 0.046 0.954 32 H 0.077 0.923 33 H 0.109 0.891 34 H 0.087 0.913 35 H 0.085 0.915 36 H 0.093 0.907 37 H 0.100 0.900 38 H 0.091 0.909 39 H 0.095 0.905 40 H 0.086 0.914 41 H 0.057 0.943 42 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 10.963 3.407 -2.658 11.784 hybrid contribution -0.844 -1.265 0.952 1.794 sum 10.119 2.142 -1.706 10.483 Atomic orbital electron populations 1.23234 0.74498 1.05447 1.02669 1.86490 1.25235 1.22233 1.84114 1.19593 0.87071 0.86084 0.81497 1.68048 1.39229 0.97495 1.31209 1.19433 0.85757 0.85328 0.83500 1.47576 1.07050 1.02186 1.66578 1.19124 0.72345 0.97346 0.96651 1.21416 0.92039 1.51536 0.92307 0.93537 1.25555 0.96784 0.94481 1.00754 1.69988 1.03131 1.50208 1.32384 0.85693 0.77403 0.78714 0.80361 1.19352 1.20356 1.20527 1.22163 0.95354 0.81290 0.97254 1.22736 0.96381 1.01349 0.95841 1.22324 0.96963 0.98931 0.95912 1.22248 0.94367 1.01555 0.96153 1.22369 0.96727 1.00584 0.95947 1.68780 1.02718 1.30090 1.26043 1.23476 1.02783 0.82256 0.79341 1.21793 0.88700 0.88420 1.36975 1.42942 1.00794 1.01958 0.96603 1.94435 0.96006 1.93699 1.54205 1.94575 1.76214 1.13757 1.56377 0.92858 0.92165 0.84306 0.95325 0.95417 0.92267 0.89108 0.91302 0.91473 0.90663 0.90001 0.90882 0.90532 0.91372 0.94296 0.75097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.09 10.41 113.37 1.18 2.27 16 2 O -0.28 -9.86 8.65 -67.54 -0.58 -10.44 16 3 C 0.45 16.50 7.51 84.83 0.64 17.14 16 4 N -0.62 -24.59 8.05 -310.89 -2.50 -27.09 16 5 C 0.61 22.73 7.06 261.51 1.85 24.58 16 6 N -0.53 -20.38 2.48 -687.15 -1.71 -22.08 16 7 C 0.27 12.51 5.14 85.63 0.44 12.95 16 8 C -0.53 -27.49 9.39 25.60 0.24 -27.25 16 9 H 0.05 2.45 7.81 -2.91 -0.02 2.43 16 10 C 0.02 1.29 5.46 84.65 0.46 1.75 16 11 N -0.92 -50.10 13.29 21.45 0.28 -49.81 16 12 Si 0.95 41.74 29.54 68.60 2.03 43.77 16 13 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 14 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 15 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 16 C 0.14 4.39 3.36 45.72 0.15 4.54 16 17 C -0.12 -3.08 6.03 31.67 0.19 -2.89 16 18 C -0.10 -1.93 6.91 31.89 0.22 -1.70 16 19 C -0.11 -2.18 6.34 31.67 0.20 -1.98 16 20 C -0.12 -3.28 5.77 31.32 0.18 -3.10 16 21 N -0.55 -16.32 4.97 -198.20 -0.99 -17.30 16 22 C 0.30 7.74 10.81 84.60 0.91 8.66 16 23 C -0.26 -8.40 6.91 36.66 0.25 -8.14 16 24 N 0.07 2.26 4.45 -45.80 -0.20 2.05 16 25 O -0.17 -5.19 18.54 18.89 0.35 -4.84 16 26 O -0.20 -7.53 17.39 25.44 0.44 -7.09 16 27 H 0.05 1.84 8.12 -2.39 -0.02 1.82 16 28 H 0.06 1.92 8.12 -2.39 -0.02 1.90 16 29 H 0.14 3.13 8.14 -2.38 -0.02 3.11 16 30 H 0.03 1.41 7.92 -2.39 -0.02 1.39 16 31 H 0.03 1.44 7.34 -2.39 -0.02 1.42 16 32 H 0.27 13.93 8.31 -92.71 -0.77 13.16 16 33 H 0.09 2.90 7.82 -2.39 -0.02 2.88 16 34 H 0.07 1.88 5.92 -2.39 -0.01 1.87 16 35 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.08 1.28 8.14 -2.39 -0.02 1.27 16 38 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 39 H 0.08 1.61 6.96 -2.39 -0.02 1.60 16 40 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 41 H 0.04 1.30 7.13 -2.38 -0.02 1.28 16 42 H 0.23 3.99 7.69 -2.91 -0.02 3.97 16 Total: -1.00 -60.69 351.77 5.09 -55.60 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: 1.05 Total: 10.43 kcal Atomic # 6 Polarization: 19.90 SS G_CDS: 6.92 Total: 26.82 kcal Atomic # 7 Polarization: -109.12 SS G_CDS: -5.12 Total: -114.23 kcal Atomic # 8 Polarization: -22.58 SS G_CDS: 0.21 Total: -22.38 kcal Atomic # 14 Polarization: 41.74 SS G_CDS: 2.03 Total: 43.77 kcal Total: -60.69 5.09 -55.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166534685.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.966 kcal (2) G-P(sol) polarization free energy of solvation -60.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.600 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds