Wall clock time and date at job start Tue Mar 31 2020 12:49:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46904 * 109.47472 * 2 1 4 4 C 1.46904 * 110.99672 * 294.92974 * 3 2 1 5 5 C 1.50698 * 109.47139 * 288.72383 * 4 3 2 6 6 H 1.07993 * 119.99989 * 356.31703 * 5 4 3 7 7 C 1.37881 * 119.99938 * 176.31675 * 5 4 3 8 8 N 1.31512 * 120.00125 * 180.02562 * 7 5 4 9 9 Si 1.86800 * 119.99889 * 359.97438 * 7 5 4 10 10 H 1.48504 * 109.47178 * 89.99871 * 9 7 5 11 11 H 1.48496 * 109.47057 * 210.00201 * 9 7 5 12 12 H 1.48499 * 109.47273 * 330.00243 * 9 7 5 13 13 C 1.38320 * 110.99966 * 58.88403 * 3 2 1 14 14 N 1.32980 * 120.82414 * 236.07047 * 13 3 2 15 15 C 1.32191 * 121.02088 * 179.97438 * 14 13 3 16 16 Cl 1.73601 * 118.66312 * 179.97438 * 15 14 13 17 17 N 1.31672 * 122.67619 * 0.02562 * 15 14 13 18 18 C 1.33222 * 120.70094 * 359.72057 * 17 15 14 19 19 C 1.40306 * 120.82768 * 56.04991 * 13 3 2 20 20 C 1.46190 * 135.10084 * 359.97438 * 19 13 3 21 21 C 1.34291 * 106.80985 * 180.02562 * 20 19 13 22 22 N 1.36774 * 134.27720 * 179.61142 * 18 17 15 23 23 C 1.46494 * 124.98777 * 0.71646 * 22 18 17 24 24 C 1.52998 * 109.47155 * 239.71715 * 23 22 18 25 25 C 1.53005 * 109.47234 * 119.71570 * 23 22 18 26 26 H 1.09000 * 109.47139 * 64.74794 * 1 2 3 27 27 H 1.08994 * 109.47511 * 184.74909 * 1 2 3 28 28 H 1.09006 * 109.47019 * 304.74874 * 1 2 3 29 29 H 1.08999 * 109.47312 * 240.00005 * 2 1 3 30 30 H 1.09002 * 109.47148 * 119.99647 * 2 1 3 31 31 H 1.09007 * 109.46999 * 48.72444 * 4 3 2 32 32 H 1.09002 * 109.46970 * 168.71767 * 4 3 2 33 33 H 0.97001 * 119.99793 * 179.97438 * 8 7 5 34 34 H 1.08003 * 126.59650 * 359.97438 * 20 19 13 35 35 H 1.07990 * 125.09795 * 180.02562 * 21 20 19 36 36 H 1.08997 * 109.47596 * 359.71936 * 23 22 18 37 37 H 1.08998 * 109.47229 * 300.00032 * 24 23 22 38 38 H 1.09002 * 109.47304 * 180.02562 * 24 23 22 39 39 H 1.08998 * 109.47207 * 59.99951 * 24 23 22 40 40 H 1.08993 * 109.47219 * 179.97438 * 25 23 22 41 41 H 1.09002 * 109.47139 * 300.00567 * 25 23 22 42 42 H 1.09007 * 109.46499 * 59.99736 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6502 2.0740 -1.2437 5 6 2.4673 1.5243 -2.3844 6 1 3.2304 0.7841 -2.1944 7 6 2.2408 1.9665 -3.6706 8 7 2.9535 1.4864 -4.6661 9 14 0.9204 3.2463 -3.9992 10 1 1.5126 4.6047 -3.9018 11 1 0.3642 3.0452 -5.3613 12 1 -0.1652 3.1066 -2.9956 13 6 1.5558 2.0748 1.1055 14 7 0.8722 3.2067 0.9649 15 6 0.4266 3.8689 2.0188 16 17 -0.4584 5.3405 1.7644 17 7 0.6276 3.4582 3.2535 18 6 1.2976 2.3323 3.4953 19 6 1.7945 1.5974 2.4031 20 6 2.4780 0.4361 2.9699 21 6 2.3657 0.5324 4.3046 22 7 1.6649 1.6650 4.6313 23 6 1.3490 2.0929 5.9963 24 6 2.6474 2.3128 6.7752 25 6 0.5150 1.0134 6.6892 26 1 -0.3633 0.4384 -0.9295 27 1 -0.3634 -1.0241 0.0851 28 1 -0.3633 0.5858 0.8444 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 0.5909 1.9153 -1.4460 32 1 1.8441 3.1415 -1.1391 33 1 2.7938 1.7972 -5.5710 34 1 2.9766 -0.3490 2.4207 35 1 2.7679 -0.1752 5.0143 36 1 0.7830 3.0239 5.9634 37 1 3.2133 1.3818 6.8081 38 1 2.4123 2.6308 7.7910 39 1 3.2414 3.0818 6.2816 40 1 0.2804 1.3316 7.7048 41 1 -0.4099 0.8567 6.1342 42 1 1.0811 0.0824 6.7220 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166591947.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:49:12 Heat of formation + Delta-G solvation = 77.329811 kcal Electronic energy + Delta-G solvation = -25493.212454 eV Core-core repulsion = 21920.932865 eV Total energy + Delta-G solvation = -3572.279589 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 322.126 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.11285 -40.60232 -39.00907 -37.71866 -36.03921 -34.86027 -33.98588 -31.64851 -31.18887 -30.30002 -28.86357 -28.17436 -25.42262 -24.97399 -23.93904 -23.24516 -22.19592 -20.52310 -19.14643 -18.94932 -18.32752 -17.35043 -17.13124 -16.80719 -16.31900 -16.11186 -15.83726 -15.20965 -15.14128 -14.99652 -14.64279 -14.50740 -14.17726 -14.03957 -13.65568 -13.45161 -13.10975 -13.08976 -12.96012 -12.75819 -12.65282 -12.50162 -12.45701 -12.21762 -12.06746 -12.01104 -11.90581 -11.87817 -11.75455 -11.48071 -10.79621 -10.35545 -10.12406 -9.70069 -8.76098 -8.30960 -6.33543 -0.33092 0.19151 0.28037 1.33132 1.35410 1.47409 1.51108 1.63837 2.32712 2.46581 2.71631 3.03309 3.22424 3.48756 3.67408 3.73635 3.99161 4.03131 4.10914 4.14832 4.20580 4.24133 4.42785 4.53178 4.64694 4.69965 4.76952 4.82318 4.84079 4.90900 4.96372 5.03071 5.11056 5.20144 5.25880 5.26051 5.29475 5.46519 5.58326 5.83320 5.92113 6.04283 6.34518 6.45300 6.70248 6.98158 7.29833 8.84478 Molecular weight = 322.13amu Principal moments of inertia in cm(-1) A = 0.015838 B = 0.004347 C = 0.003668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1767.524161 B = 6439.207806 C = 7630.731153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.063 3.937 3 N -0.463 5.463 4 C 0.182 3.818 5 C -0.517 4.517 6 H 0.051 0.949 7 C 0.025 3.975 8 N -0.937 5.937 9 Si 0.929 3.071 10 H -0.271 1.271 11 H -0.276 1.276 12 H -0.256 1.256 13 C 0.420 3.580 14 N -0.596 5.596 15 C 0.391 3.609 16 Cl 0.022 6.978 17 N -0.550 5.550 18 C 0.317 3.683 19 C -0.235 4.235 20 C -0.175 4.175 21 C 0.076 3.924 22 N -0.446 5.446 23 C 0.122 3.878 24 C -0.155 4.155 25 C -0.154 4.154 26 H 0.042 0.958 27 H 0.095 0.905 28 H 0.035 0.965 29 H 0.086 0.914 30 H 0.110 0.890 31 H 0.012 0.988 32 H 0.026 0.974 33 H 0.268 0.732 34 H 0.172 0.828 35 H 0.229 0.771 36 H 0.086 0.914 37 H 0.083 0.917 38 H 0.097 0.903 39 H 0.043 0.957 40 H 0.097 0.903 41 H 0.045 0.955 42 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.795 -3.359 26.588 27.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.062 4.062 3 N -0.177 5.177 4 C 0.056 3.944 5 C -0.556 4.556 6 H 0.069 0.931 7 C -0.174 4.174 8 N -0.578 5.578 9 Si 0.753 3.247 10 H -0.197 1.197 11 H -0.201 1.201 12 H -0.180 1.180 13 C 0.176 3.824 14 N -0.325 5.325 15 C 0.093 3.907 16 Cl 0.050 6.950 17 N -0.277 5.277 18 C 0.078 3.922 19 C -0.248 4.248 20 C -0.201 4.201 21 C -0.048 4.048 22 N -0.133 5.133 23 C 0.022 3.978 24 C -0.213 4.213 25 C -0.212 4.212 26 H 0.061 0.939 27 H 0.114 0.886 28 H 0.054 0.946 29 H 0.105 0.895 30 H 0.128 0.872 31 H 0.030 0.970 32 H 0.044 0.956 33 H 0.077 0.923 34 H 0.189 0.811 35 H 0.245 0.755 36 H 0.105 0.895 37 H 0.102 0.898 38 H 0.116 0.884 39 H 0.062 0.938 40 H 0.115 0.885 41 H 0.064 0.936 42 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -4.851 -2.412 26.612 27.157 hybrid contribution -0.757 0.693 -1.127 1.525 sum -5.608 -1.719 25.484 26.151 Atomic orbital electron populations 1.22292 0.96742 1.03455 1.00471 1.22387 0.93765 0.85205 1.04800 1.58758 1.52236 1.04903 1.01782 1.19887 0.94879 0.94319 0.85279 1.21144 1.19183 1.24323 0.90903 0.93083 1.25541 0.97998 0.98052 0.95804 1.69995 1.42172 1.45192 1.00397 0.85983 0.80664 0.80041 0.78015 1.19681 1.20081 1.18017 1.19751 0.84074 0.87977 0.90621 1.67956 1.17879 1.12212 1.34405 1.22149 0.93848 0.90867 0.83791 1.98381 1.71851 1.28517 1.96286 1.66477 1.22599 1.15917 1.22727 1.18100 0.95916 0.90325 0.87840 1.20263 1.09887 1.02920 0.91694 1.21849 1.06120 0.98557 0.93526 1.22563 0.96574 0.89252 0.96423 1.44331 1.45103 1.19678 1.04207 1.21754 0.98776 0.99819 0.77499 1.22156 0.95060 1.03283 1.00789 1.22153 0.99204 0.98465 1.01358 0.93905 0.88643 0.94613 0.89531 0.87236 0.97036 0.95635 0.92250 0.81115 0.75492 0.89548 0.89817 0.88391 0.93819 0.88464 0.93568 0.89779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.73 9.34 71.98 0.67 -5.06 16 2 C 0.06 2.25 5.68 86.30 0.49 2.74 16 3 N -0.46 -20.10 4.70 -705.13 -3.32 -23.42 16 4 C 0.18 9.27 3.08 85.56 0.26 9.54 16 5 C -0.52 -29.95 9.01 25.60 0.23 -29.72 16 6 H 0.05 3.20 7.85 -2.91 -0.02 3.17 16 7 C 0.02 1.46 5.47 84.66 0.46 1.93 16 8 N -0.94 -58.14 13.96 21.45 0.30 -57.84 16 9 Si 0.93 46.03 27.54 68.60 1.89 47.92 16 10 H -0.27 -13.29 7.11 99.48 0.71 -12.58 16 11 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 12 H -0.26 -12.38 6.44 99.48 0.64 -11.74 16 13 C 0.42 17.11 4.87 133.41 0.65 17.76 16 14 N -0.60 -25.71 8.62 -187.90 -1.62 -27.33 16 15 C 0.39 15.01 8.15 180.80 1.47 16.48 16 16 Cl 0.02 0.72 29.25 -2.72 -0.08 0.65 16 17 N -0.55 -19.33 10.43 -188.57 -1.97 -21.29 16 18 C 0.32 9.95 7.89 133.95 1.06 11.01 16 19 C -0.23 -7.84 5.89 -20.11 -0.12 -7.96 16 20 C -0.18 -4.10 9.81 23.43 0.23 -3.87 16 21 C 0.08 1.24 10.16 82.96 0.84 2.08 16 22 N -0.45 -9.44 2.63 -499.26 -1.32 -10.76 16 23 C 0.12 1.76 3.53 44.99 0.16 1.92 16 24 C -0.16 -1.52 9.23 71.98 0.66 -0.85 16 25 C -0.15 -1.40 9.23 71.98 0.66 -0.74 16 26 H 0.04 1.64 6.53 -2.39 -0.02 1.62 16 27 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 28 H 0.03 1.24 7.01 -2.38 -0.02 1.22 16 29 H 0.09 3.39 7.20 -2.39 -0.02 3.37 16 30 H 0.11 3.11 5.26 -2.39 -0.01 3.10 16 31 H 0.01 0.61 4.89 -2.38 -0.01 0.60 16 32 H 0.03 1.39 6.92 -2.39 -0.02 1.38 16 33 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 34 H 0.17 3.41 6.91 -2.91 -0.02 3.39 16 35 H 0.23 1.25 8.06 -2.92 -0.02 1.23 16 36 H 0.09 1.59 8.05 -2.39 -0.02 1.57 16 37 H 0.08 0.53 7.89 -2.39 -0.02 0.51 16 38 H 0.10 0.55 8.14 -2.39 -0.02 0.54 16 39 H 0.04 0.63 8.14 -2.39 -0.02 0.61 16 40 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 41 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 42 H 0.08 0.47 7.89 -2.38 -0.02 0.45 16 Total: -1.00 -75.02 352.60 2.61 -72.42 By element: Atomic # 1 Polarization: 3.43 SS G_CDS: 0.97 Total: 4.40 kcal Atomic # 6 Polarization: 7.52 SS G_CDS: 7.74 Total: 15.26 kcal Atomic # 7 Polarization: -132.72 SS G_CDS: -7.92 Total: -140.64 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 1.89 Total: 47.92 kcal Atomic # 17 Polarization: 0.72 SS G_CDS: -0.08 Total: 0.65 kcal Total: -75.02 2.61 -72.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166591947.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.748 kcal (2) G-P(sol) polarization free energy of solvation -75.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.418 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds