Wall clock time and date at job start Tue Mar 31 2020 13:26:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86805 * 120.00333 * 2 1 4 4 H 1.48503 * 109.47242 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.46862 * 299.99840 * 3 2 1 6 6 H 1.48496 * 109.46895 * 59.99848 * 3 2 1 7 7 C 1.37877 * 119.99979 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00580 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00099 * 359.97438 * 7 2 1 10 10 N 1.46906 * 109.47493 * 184.29871 * 9 7 2 11 11 C 1.46896 * 110.99932 * 166.55288 * 10 9 7 12 12 C 1.50699 * 109.47376 * 298.97588 * 11 10 9 13 13 C 1.34520 * 125.78974 * 95.70432 * 12 11 10 14 14 C 1.41378 * 106.83940 * 180.02562 * 13 12 11 15 15 C 1.34514 * 106.84228 * 359.97438 * 14 13 12 16 16 O 1.34300 * 108.42191 * 359.73810 * 15 14 13 17 17 C 1.46893 * 110.99952 * 290.50967 * 10 9 7 18 18 C 1.50703 * 109.47065 * 171.35221 * 17 10 9 19 19 C 1.36175 * 120.19092 * 266.42293 * 18 17 10 20 20 C 1.39313 * 120.86520 * 179.70273 * 19 18 17 21 21 C 1.36110 * 121.06804 * 0.26739 * 20 19 18 22 22 C 1.40557 * 119.74866 * 0.02562 * 21 20 19 23 23 N 1.33691 * 121.08379 * 180.02562 * 22 21 20 24 24 C 1.31081 * 121.32055 * 179.97438 * 23 22 21 25 25 C 1.39341 * 121.75337 * 0.02562 * 24 23 22 26 26 C 1.36567 * 119.94113 * 359.97438 * 25 24 23 27 27 C 1.40380 * 120.19268 * 86.66396 * 18 17 10 28 28 H 0.97007 * 119.99916 * 359.97438 * 1 2 3 29 29 H 1.09004 * 109.47359 * 64.29736 * 9 7 2 30 30 H 1.08999 * 109.46947 * 304.30264 * 9 7 2 31 31 H 1.09008 * 109.47176 * 58.97767 * 11 10 9 32 32 H 1.08996 * 109.47209 * 178.97586 * 11 10 9 33 33 H 1.08001 * 126.57680 * 0.03377 * 13 12 11 34 34 H 1.08006 * 126.57782 * 179.97438 * 14 13 12 35 35 H 1.07998 * 125.78642 * 180.02562 * 15 14 13 36 36 H 1.09002 * 109.47315 * 51.34763 * 17 10 9 37 37 H 1.08997 * 109.47315 * 291.35257 * 17 10 9 38 38 H 1.07998 * 119.56446 * 359.96760 * 19 18 17 39 39 H 1.07999 * 119.46487 * 180.29716 * 20 19 18 40 40 H 1.08001 * 120.12676 * 180.02562 * 21 20 19 41 41 H 1.07995 * 119.12131 * 180.02562 * 24 23 22 42 42 H 1.07997 * 120.02839 * 179.97438 * 25 24 23 43 43 H 1.07996 * 120.92789 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0044 -1.1940 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2022 -3.6139 0.1027 11 6 1.5097 -4.8688 0.4245 12 6 0.8124 -4.7312 1.7534 13 6 -0.4786 -4.3992 1.9337 14 6 -0.7071 -4.3861 3.3288 15 6 0.4577 -4.7113 3.9176 16 8 1.3730 -4.9253 2.9584 17 6 2.9908 -3.7487 -1.1293 18 6 4.0924 -4.7542 -0.9131 19 6 5.3293 -4.3410 -0.5212 20 6 6.3562 -5.2588 -0.3113 21 6 6.1552 -6.5922 -0.4965 22 6 4.8937 -7.0570 -0.9067 23 7 4.6666 -8.3608 -1.0961 24 6 3.4919 -8.7994 -1.4781 25 6 2.4243 -7.9334 -1.7058 26 6 2.5881 -6.5889 -1.5309 27 6 3.8507 -6.1215 -1.1193 28 1 -0.4850 0.8401 0.0004 29 1 0.6829 -2.5908 -0.9263 30 1 0.5681 -2.5244 0.8486 31 1 0.7750 -5.0874 -0.3504 32 1 2.2349 -5.6808 0.4771 33 1 -1.2018 -4.1841 1.1610 34 1 -1.6384 -4.1585 3.8264 35 1 0.6269 -4.7918 4.9812 36 1 3.4255 -2.7837 -1.3899 37 1 2.3444 -4.0866 -1.9393 38 1 5.5156 -3.2885 -0.3671 39 1 7.3272 -4.9067 0.0039 40 1 6.9619 -7.2904 -0.3290 41 1 3.3477 -9.8603 -1.6200 42 1 1.4683 -8.3251 -2.0204 43 1 1.7714 -5.9034 -1.7025 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167558611.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:26:55 Heat of formation + Delta-G solvation = 85.808225 kcal Electronic energy + Delta-G solvation = -26918.566965 eV Core-core repulsion = 23316.795126 eV Total energy + Delta-G solvation = -3601.771839 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.05409 -40.90038 -37.66318 -36.51466 -33.56873 -32.61223 -32.35817 -30.98293 -30.46226 -29.58100 -27.27259 -25.94677 -24.09806 -23.99605 -23.43340 -21.58048 -21.10357 -20.38439 -19.47183 -18.07191 -17.20992 -16.91003 -16.62535 -16.41807 -15.58225 -15.11305 -14.66299 -14.52421 -14.26380 -14.14863 -14.10487 -13.73214 -13.41876 -13.13487 -12.88432 -12.55502 -12.33385 -12.21626 -12.08177 -11.71619 -11.53911 -11.44391 -11.25530 -11.05502 -10.97844 -10.71972 -10.60543 -10.28767 -9.98354 -9.47599 -9.36712 -9.22299 -8.66755 -8.47912 -8.05218 -7.96233 -7.41388 -6.06919 -4.08019 0.48713 0.91837 2.07171 2.23893 3.03133 3.12018 3.27954 3.35910 3.39682 3.49156 4.18539 4.33614 4.39298 4.65410 4.79119 4.89524 4.95801 5.00081 5.15922 5.21408 5.25241 5.30282 5.42796 5.49227 5.50725 5.53553 5.68136 5.76989 5.86189 5.92702 6.04717 6.10366 6.16457 6.27141 6.35571 6.41230 6.50426 6.56130 6.59204 6.79305 6.97909 6.98535 7.13357 7.19356 7.63156 7.72267 7.94565 7.97267 8.06180 8.41653 8.97871 9.55774 11.03845 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.010540 B = 0.004837 C = 0.003825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2655.902939 B = 5787.671578 C = 7318.856146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.058 3.942 3 Si 0.895 3.105 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.507 4.507 8 H 0.063 0.937 9 C 0.185 3.815 10 N -0.522 5.522 11 C 0.123 3.877 12 C 0.016 3.984 13 C -0.204 4.204 14 C -0.210 4.210 15 C -0.055 4.055 16 O -0.170 6.170 17 C 0.096 3.904 18 C -0.044 4.044 19 C -0.100 4.100 20 C -0.092 4.092 21 C -0.108 4.108 22 C 0.125 3.875 23 N -0.478 5.478 24 C 0.126 3.874 25 C -0.184 4.184 26 C -0.057 4.057 27 C -0.095 4.095 28 H 0.261 0.739 29 H -0.011 1.011 30 H 0.050 0.950 31 H 0.053 0.947 32 H 0.083 0.917 33 H 0.144 0.856 34 H 0.142 0.858 35 H 0.196 0.804 36 H 0.103 0.897 37 H 0.035 0.965 38 H 0.132 0.868 39 H 0.128 0.872 40 H 0.130 0.870 41 H 0.155 0.845 42 H 0.135 0.865 43 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.561 -14.279 -0.651 15.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.144 4.144 3 Si 0.723 3.277 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.545 4.545 8 H 0.081 0.919 9 C 0.060 3.940 10 N -0.247 5.247 11 C -0.005 4.005 12 C -0.035 4.035 13 C -0.224 4.224 14 C -0.229 4.229 15 C -0.123 4.123 16 O -0.065 6.065 17 C -0.031 4.031 18 C -0.046 4.046 19 C -0.118 4.118 20 C -0.112 4.112 21 C -0.127 4.127 22 C 0.004 3.996 23 N -0.186 5.186 24 C -0.047 4.047 25 C -0.204 4.204 26 C -0.083 4.083 27 C -0.098 4.098 28 H 0.070 0.930 29 H 0.007 0.993 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.101 0.899 33 H 0.161 0.839 34 H 0.160 0.840 35 H 0.212 0.788 36 H 0.121 0.879 37 H 0.053 0.947 38 H 0.150 0.850 39 H 0.146 0.854 40 H 0.148 0.852 41 H 0.172 0.828 42 H 0.153 0.847 43 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 5.797 -14.629 -0.058 15.736 hybrid contribution -1.300 1.541 -0.583 2.099 sum 4.497 -13.088 -0.641 13.854 Atomic orbital electron populations 1.69958 1.06019 1.26662 1.50838 1.24951 0.94839 0.99212 0.95382 0.86480 0.80116 0.83549 0.77517 1.19633 1.21116 1.21035 1.21128 0.93442 0.89768 1.50207 0.91856 1.19956 0.90441 0.86912 0.96662 1.62249 1.26773 1.03014 1.32707 1.20822 0.96232 0.95326 0.88091 1.22205 0.92107 1.03600 0.85553 1.21539 0.96572 1.07539 0.96708 1.21720 0.99336 1.07612 0.94241 1.23848 0.87938 1.06814 0.93668 1.84000 1.39231 1.68625 1.14658 1.21054 0.92733 0.98110 0.91248 1.19887 0.95812 0.92251 0.96634 1.20895 0.92303 1.00592 0.98042 1.20933 0.99357 0.92821 0.98059 1.20690 0.95310 0.95770 1.00901 1.18828 0.93977 0.88459 0.98326 1.68011 1.23031 1.15087 1.12476 1.22870 0.88102 1.00211 0.93521 1.21828 1.00875 0.94232 1.03443 1.21750 0.96362 0.96250 0.93904 1.18771 0.94541 0.94436 1.02009 0.92979 0.99292 0.93244 0.92948 0.89926 0.83861 0.83999 0.78759 0.87881 0.94676 0.84975 0.85428 0.85177 0.82771 0.84728 0.84247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.94 13.29 55.43 0.74 -25.20 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 3 Si 0.90 21.21 29.54 -169.99 -5.02 16.19 16 4 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 6 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.51 -13.70 8.51 -34.44 -0.29 -13.99 16 8 H 0.06 1.69 7.25 -52.48 -0.38 1.31 16 9 C 0.18 4.58 4.57 -4.97 -0.02 4.55 16 10 N -0.52 -10.77 4.50 -238.96 -1.08 -11.85 16 11 C 0.12 2.23 3.95 -4.98 -0.02 2.21 16 12 C 0.02 0.31 5.92 -35.62 -0.21 0.10 16 13 C -0.20 -3.80 9.40 -39.70 -0.37 -4.17 16 14 C -0.21 -3.49 10.91 -39.70 -0.43 -3.92 16 15 C -0.05 -0.88 12.09 29.42 0.36 -0.52 16 16 O -0.17 -3.25 10.65 5.71 0.06 -3.19 16 17 C 0.10 1.72 4.75 -4.98 -0.02 1.70 16 18 C -0.04 -0.71 4.94 -104.56 -0.52 -1.23 16 19 C -0.10 -1.47 9.59 -39.92 -0.38 -1.85 16 20 C -0.09 -1.17 9.94 -39.95 -0.40 -1.57 16 21 C -0.11 -1.45 9.98 -39.47 -0.39 -1.85 16 22 C 0.12 1.88 6.60 -84.86 -0.56 1.32 16 23 N -0.48 -6.87 10.34 -10.97 -0.11 -6.98 16 24 C 0.13 1.47 11.15 -17.46 -0.19 1.28 16 25 C -0.18 -2.08 10.03 -39.77 -0.40 -2.48 16 26 C -0.06 -0.77 7.18 -39.22 -0.28 -1.05 16 27 C -0.10 -1.45 4.75 -106.80 -0.51 -1.96 16 28 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 29 H -0.01 -0.28 8.08 -51.93 -0.42 -0.70 16 30 H 0.05 1.34 5.68 -51.93 -0.30 1.04 16 31 H 0.05 0.87 6.89 -51.92 -0.36 0.51 16 32 H 0.08 1.45 4.90 -51.93 -0.25 1.19 16 33 H 0.14 2.59 8.06 -52.49 -0.42 2.16 16 34 H 0.14 1.98 8.06 -52.48 -0.42 1.56 16 35 H 0.20 2.24 8.06 -52.49 -0.42 1.82 16 36 H 0.10 1.97 6.76 -51.93 -0.35 1.62 16 37 H 0.04 0.60 6.62 -51.93 -0.34 0.25 16 38 H 0.13 1.89 8.06 -52.49 -0.42 1.47 16 39 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 40 H 0.13 1.50 8.06 -52.49 -0.42 1.08 16 41 H 0.16 1.26 8.06 -52.49 -0.42 0.84 16 42 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 43 H 0.14 1.83 4.65 -52.49 -0.24 1.58 16 LS Contribution 352.96 15.07 5.32 5.32 Total: -1.00 -32.08 352.96 -10.01 -42.09 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: -5.16 Total: 5.56 kcal Atomic # 6 Polarization: -17.18 SS G_CDS: -4.75 Total: -21.94 kcal Atomic # 7 Polarization: -43.58 SS G_CDS: -0.45 Total: -44.03 kcal Atomic # 8 Polarization: -3.25 SS G_CDS: 0.06 Total: -3.19 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.08 -10.01 -42.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167558611.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.894 kcal (2) G-P(sol) polarization free energy of solvation -32.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.086 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds