Wall clock time and date at job start Tue Mar 31 2020 13:26:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86805 * 120.00333 * 2 1 4 4 H 1.48503 * 109.47242 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.46862 * 299.99840 * 3 2 1 6 6 H 1.48496 * 109.46895 * 59.99848 * 3 2 1 7 7 C 1.37877 * 119.99979 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00580 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00099 * 359.97438 * 7 2 1 10 10 N 1.46906 * 109.47493 * 184.29871 * 9 7 2 11 11 C 1.46896 * 110.99932 * 166.55288 * 10 9 7 12 12 C 1.50699 * 109.47376 * 298.97588 * 11 10 9 13 13 C 1.34520 * 125.78974 * 95.70432 * 12 11 10 14 14 C 1.41378 * 106.83940 * 180.02562 * 13 12 11 15 15 C 1.34514 * 106.84228 * 359.97438 * 14 13 12 16 16 O 1.34300 * 108.42191 * 359.73810 * 15 14 13 17 17 C 1.46893 * 110.99952 * 290.50967 * 10 9 7 18 18 C 1.50703 * 109.47065 * 171.35221 * 17 10 9 19 19 C 1.36175 * 120.19092 * 266.42293 * 18 17 10 20 20 C 1.39313 * 120.86520 * 179.70273 * 19 18 17 21 21 C 1.36110 * 121.06804 * 0.26739 * 20 19 18 22 22 C 1.40557 * 119.74866 * 0.02562 * 21 20 19 23 23 N 1.33691 * 121.08379 * 180.02562 * 22 21 20 24 24 C 1.31081 * 121.32055 * 179.97438 * 23 22 21 25 25 C 1.39341 * 121.75337 * 0.02562 * 24 23 22 26 26 C 1.36567 * 119.94113 * 359.97438 * 25 24 23 27 27 C 1.40380 * 120.19268 * 86.66396 * 18 17 10 28 28 H 0.97007 * 119.99916 * 359.97438 * 1 2 3 29 29 H 1.09004 * 109.47359 * 64.29736 * 9 7 2 30 30 H 1.08999 * 109.46947 * 304.30264 * 9 7 2 31 31 H 1.09008 * 109.47176 * 58.97767 * 11 10 9 32 32 H 1.08996 * 109.47209 * 178.97586 * 11 10 9 33 33 H 1.08001 * 126.57680 * 0.03377 * 13 12 11 34 34 H 1.08006 * 126.57782 * 179.97438 * 14 13 12 35 35 H 1.07998 * 125.78642 * 180.02562 * 15 14 13 36 36 H 1.09002 * 109.47315 * 51.34763 * 17 10 9 37 37 H 1.08997 * 109.47315 * 291.35257 * 17 10 9 38 38 H 1.07998 * 119.56446 * 359.96760 * 19 18 17 39 39 H 1.07999 * 119.46487 * 180.29716 * 20 19 18 40 40 H 1.08001 * 120.12676 * 180.02562 * 21 20 19 41 41 H 1.07995 * 119.12131 * 180.02562 * 24 23 22 42 42 H 1.07997 * 120.02839 * 179.97438 * 25 24 23 43 43 H 1.07996 * 120.92789 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0044 -1.1940 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2022 -3.6139 0.1027 11 6 1.5097 -4.8688 0.4245 12 6 0.8124 -4.7312 1.7534 13 6 -0.4786 -4.3992 1.9337 14 6 -0.7071 -4.3861 3.3288 15 6 0.4577 -4.7113 3.9176 16 8 1.3730 -4.9253 2.9584 17 6 2.9908 -3.7487 -1.1293 18 6 4.0924 -4.7542 -0.9131 19 6 5.3293 -4.3410 -0.5212 20 6 6.3562 -5.2588 -0.3113 21 6 6.1552 -6.5922 -0.4965 22 6 4.8937 -7.0570 -0.9067 23 7 4.6666 -8.3608 -1.0961 24 6 3.4919 -8.7994 -1.4781 25 6 2.4243 -7.9334 -1.7058 26 6 2.5881 -6.5889 -1.5309 27 6 3.8507 -6.1215 -1.1193 28 1 -0.4850 0.8401 0.0004 29 1 0.6829 -2.5908 -0.9263 30 1 0.5681 -2.5244 0.8486 31 1 0.7750 -5.0874 -0.3504 32 1 2.2349 -5.6808 0.4771 33 1 -1.2018 -4.1841 1.1610 34 1 -1.6384 -4.1585 3.8264 35 1 0.6269 -4.7918 4.9812 36 1 3.4255 -2.7837 -1.3899 37 1 2.3444 -4.0866 -1.9393 38 1 5.5156 -3.2885 -0.3671 39 1 7.3272 -4.9067 0.0039 40 1 6.9619 -7.2904 -0.3290 41 1 3.3477 -9.8603 -1.6200 42 1 1.4683 -8.3251 -2.0204 43 1 1.7714 -5.9034 -1.7025 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167558611.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:26:54 Heat of formation + Delta-G solvation = 66.878105 kcal Electronic energy + Delta-G solvation = -26919.387837 eV Core-core repulsion = 23316.795126 eV Total energy + Delta-G solvation = -3602.592711 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.43962 -41.96321 -39.00796 -37.73710 -35.03935 -34.29825 -33.79094 -32.22779 -31.48660 -30.98121 -29.07013 -27.27009 -25.75112 -25.12121 -24.47186 -23.15389 -22.55728 -21.66928 -20.86723 -19.11762 -18.55834 -18.42878 -17.99684 -17.64386 -17.06561 -16.81734 -16.06063 -15.76403 -15.71854 -15.43729 -15.20937 -15.03349 -14.73339 -14.38454 -14.16380 -13.87914 -13.78283 -13.71981 -13.45476 -13.34051 -12.87819 -12.81630 -12.66822 -12.56456 -12.50553 -12.28618 -12.14010 -11.85828 -11.46842 -11.19669 -10.78708 -10.58377 -10.44714 -9.68946 -9.40589 -9.16581 -9.01976 -8.18709 -6.27050 -0.55444 -0.09847 0.81390 1.03563 1.39941 1.41505 1.53743 1.73461 2.02583 2.17248 2.40713 3.07720 3.15438 3.39708 3.41520 3.61586 3.80925 3.84704 3.87638 3.89873 4.11137 4.14307 4.17119 4.29348 4.33475 4.35721 4.43217 4.55238 4.63069 4.73350 4.90672 4.95703 5.01457 5.05665 5.10262 5.15760 5.16738 5.21998 5.29663 5.44963 5.58377 5.62146 5.66423 5.68258 5.94947 6.03621 6.21805 6.30276 6.50384 6.86620 6.94870 7.41255 8.92180 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.010540 B = 0.004837 C = 0.003825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2655.902939 B = 5787.671578 C = 7318.856146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.006 3.994 3 Si 0.962 3.038 4 H -0.263 1.263 5 H -0.278 1.278 6 H -0.282 1.282 7 C -0.519 4.519 8 H 0.062 0.938 9 C 0.203 3.797 10 N -0.531 5.531 11 C 0.132 3.868 12 C -0.012 4.012 13 C -0.217 4.217 14 C -0.225 4.225 15 C -0.046 4.046 16 O -0.189 6.189 17 C 0.104 3.896 18 C -0.064 4.064 19 C -0.107 4.107 20 C -0.090 4.090 21 C -0.108 4.108 22 C 0.104 3.896 23 N -0.497 5.497 24 C 0.128 3.872 25 C -0.169 4.169 26 C -0.078 4.078 27 C -0.108 4.108 28 H 0.263 0.737 29 H -0.035 1.035 30 H 0.025 0.975 31 H 0.063 0.937 32 H 0.091 0.909 33 H 0.138 0.862 34 H 0.168 0.832 35 H 0.241 0.759 36 H 0.083 0.917 37 H 0.039 0.961 38 H 0.130 0.870 39 H 0.159 0.841 40 H 0.150 0.850 41 H 0.194 0.806 42 H 0.169 0.831 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.571 -15.620 -0.028 16.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.192 4.192 3 Si 0.787 3.213 4 H -0.187 1.187 5 H -0.204 1.204 6 H -0.208 1.208 7 C -0.558 4.558 8 H 0.080 0.920 9 C 0.078 3.922 10 N -0.256 5.256 11 C 0.005 3.995 12 C -0.062 4.062 13 C -0.237 4.237 14 C -0.244 4.244 15 C -0.113 4.113 16 O -0.085 6.085 17 C -0.023 4.023 18 C -0.065 4.065 19 C -0.126 4.126 20 C -0.110 4.110 21 C -0.127 4.127 22 C -0.016 4.016 23 N -0.205 5.205 24 C -0.045 4.045 25 C -0.189 4.189 26 C -0.103 4.103 27 C -0.110 4.110 28 H 0.071 0.929 29 H -0.017 1.017 30 H 0.043 0.957 31 H 0.081 0.919 32 H 0.109 0.891 33 H 0.156 0.844 34 H 0.185 0.815 35 H 0.257 0.743 36 H 0.102 0.898 37 H 0.057 0.943 38 H 0.148 0.852 39 H 0.177 0.823 40 H 0.167 0.833 41 H 0.210 0.790 42 H 0.186 0.814 43 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 6.823 -15.986 0.556 17.390 hybrid contribution -1.665 1.821 -0.769 2.584 sum 5.158 -14.165 -0.213 15.076 Atomic orbital electron populations 1.70079 1.07532 1.27589 1.51856 1.25792 0.95656 1.02761 0.94983 0.85443 0.79181 0.79120 0.77557 1.18668 1.20421 1.20847 1.21449 0.93554 0.90999 1.49769 0.92004 1.19535 0.90384 0.88075 0.94237 1.62113 1.26040 1.03192 1.34221 1.20784 0.96449 0.94131 0.88163 1.22389 0.92555 1.05196 0.86076 1.21749 0.96557 1.07410 0.98033 1.22079 1.00909 1.08028 0.93336 1.24770 0.87032 1.04481 0.94976 1.83987 1.40345 1.69072 1.15079 1.20907 0.93116 0.97997 0.90317 1.19698 0.95562 0.92348 0.98923 1.21056 0.92612 1.01061 0.97828 1.21174 1.00025 0.92283 0.97475 1.21003 0.95362 0.96358 0.99943 1.19120 0.94553 0.88931 0.99033 1.68077 1.24408 1.14563 1.13466 1.23569 0.87234 1.02081 0.91633 1.22222 1.02246 0.93158 1.01256 1.21831 0.95846 0.97466 0.95198 1.18850 0.95536 0.94008 1.02623 0.92858 1.01697 0.95737 0.91943 0.89113 0.84366 0.81490 0.74324 0.89822 0.94283 0.85213 0.82298 0.83254 0.78964 0.81353 0.84679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.17 13.29 21.45 0.28 -54.89 16 2 C 0.01 0.36 5.46 84.66 0.46 0.82 16 3 Si 0.96 43.96 29.54 68.60 2.03 45.99 16 4 H -0.26 -11.50 7.11 99.48 0.71 -10.80 16 5 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 6 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 7 C -0.52 -28.91 8.51 25.60 0.22 -28.69 16 8 H 0.06 3.38 7.25 -2.91 -0.02 3.36 16 9 C 0.20 10.56 4.57 85.56 0.39 10.95 16 10 N -0.53 -22.78 4.50 -909.95 -4.10 -26.88 16 11 C 0.13 4.93 3.95 85.56 0.34 5.26 16 12 C -0.01 -0.46 5.92 24.83 0.15 -0.32 16 13 C -0.22 -8.30 9.40 22.19 0.21 -8.09 16 14 C -0.22 -7.30 10.91 22.19 0.24 -7.06 16 15 C -0.05 -1.39 12.09 66.97 0.81 -0.58 16 16 O -0.19 -7.19 10.65 -2.48 -0.03 -7.21 16 17 C 0.10 3.89 4.75 85.56 0.41 4.30 16 18 C -0.06 -2.10 4.94 -19.82 -0.10 -2.19 16 19 C -0.11 -3.18 9.59 22.05 0.21 -2.96 16 20 C -0.09 -2.19 9.94 22.03 0.22 -1.97 16 21 C -0.11 -2.75 9.98 22.34 0.22 -2.53 16 22 C 0.10 3.03 6.60 40.29 0.27 3.30 16 23 N -0.50 -13.34 10.34 -188.63 -1.95 -15.29 16 24 C 0.13 2.63 11.15 85.07 0.95 3.58 16 25 C -0.17 -3.45 10.03 22.14 0.22 -3.23 16 26 C -0.08 -2.06 7.18 22.50 0.16 -1.89 16 27 C -0.11 -3.28 4.75 -21.28 -0.10 -3.38 16 28 H 0.26 14.70 8.31 -92.70 -0.77 13.93 16 29 H -0.03 -1.91 8.08 -2.39 -0.02 -1.93 16 30 H 0.02 1.39 5.68 -2.39 -0.01 1.38 16 31 H 0.06 2.16 6.89 -2.38 -0.02 2.15 16 32 H 0.09 3.23 4.90 -2.39 -0.01 3.22 16 33 H 0.14 5.25 8.06 -2.91 -0.02 5.23 16 34 H 0.17 4.41 8.06 -2.91 -0.02 4.38 16 35 H 0.24 4.73 8.06 -2.91 -0.02 4.70 16 36 H 0.08 3.40 6.76 -2.39 -0.02 3.38 16 37 H 0.04 1.40 6.62 -2.39 -0.02 1.39 16 38 H 0.13 3.80 8.06 -2.91 -0.02 3.77 16 39 H 0.16 2.75 8.06 -2.91 -0.02 2.73 16 40 H 0.15 3.13 8.06 -2.91 -0.02 3.10 16 41 H 0.19 2.36 8.06 -2.91 -0.02 2.33 16 42 H 0.17 2.21 8.06 -2.91 -0.02 2.19 16 43 H 0.14 3.60 4.65 -2.91 -0.01 3.59 16 Total: -1.00 -71.13 352.96 2.55 -68.59 By element: Atomic # 1 Polarization: 23.34 SS G_CDS: 1.04 Total: 24.37 kcal Atomic # 6 Polarization: -39.95 SS G_CDS: 5.28 Total: -34.68 kcal Atomic # 7 Polarization: -91.29 SS G_CDS: -5.76 Total: -97.06 kcal Atomic # 8 Polarization: -7.19 SS G_CDS: -0.03 Total: -7.21 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Total: -71.13 2.55 -68.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167558611.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.466 kcal (2) G-P(sol) polarization free energy of solvation -71.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.588 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds