Wall clock time and date at job start Tue Mar 31 2020 13:00:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46896 * 111.00314 * 2 1 4 4 C 1.53245 * 109.34040 * 187.25611 * 3 2 1 5 5 N 1.47086 * 108.51894 * 306.16944 * 4 3 2 6 6 C 1.37515 * 120.87941 * 231.18873 * 5 4 3 7 7 N 1.30317 * 119.99656 * 175.11413 * 6 5 4 8 8 N 1.37699 * 120.00007 * 355.10810 * 6 5 4 9 9 C 1.39007 * 119.99965 * 173.58323 * 8 6 5 10 10 C 1.38629 * 120.27570 * 339.07033 * 9 8 6 11 11 C 1.38347 * 120.01217 * 180.02562 * 10 9 8 12 12 Cl 1.73607 * 119.70158 * 179.97438 * 11 10 9 13 13 C 1.39038 * 120.59274 * 359.71915 * 11 10 9 14 14 C 1.36412 * 120.56668 * 0.55837 * 13 11 10 15 15 C 1.40759 * 119.95661 * 359.44956 * 14 13 11 16 16 C 1.41026 * 120.28761 * 180.25010 * 15 14 13 17 17 H 1.08003 * 119.99743 * 147.38228 * 16 15 14 18 18 C 1.39920 * 120.00027 * 327.38413 * 16 15 14 19 19 N 1.30886 * 119.99709 * 163.33412 * 18 16 15 20 20 Si 1.86795 * 119.99957 * 343.33414 * 18 16 15 21 21 H 1.48499 * 109.47204 * 86.79997 * 20 18 16 22 22 H 1.48505 * 109.46915 * 206.79849 * 20 18 16 23 23 H 1.48502 * 109.47185 * 326.79597 * 20 18 16 24 24 C 1.47077 * 118.23524 * 51.46036 * 5 4 3 25 25 C 1.46897 * 111.00063 * 124.30413 * 2 1 3 26 26 H 1.09005 * 109.47054 * 59.99606 * 1 2 3 27 27 H 1.09001 * 109.47518 * 180.02562 * 1 2 3 28 28 H 1.09008 * 109.47243 * 299.99880 * 1 2 3 29 29 H 1.09001 * 109.49342 * 67.29685 * 3 2 1 30 30 H 1.09003 * 109.51550 * 307.22891 * 3 2 1 31 31 H 1.09001 * 109.62756 * 186.46557 * 4 3 2 32 32 H 1.08994 * 109.78986 * 65.97722 * 4 3 2 33 33 H 0.96997 * 120.00127 * 5.44843 * 7 6 5 34 34 H 0.96995 * 120.00256 * 353.59159 * 8 6 5 35 35 H 1.07993 * 119.99544 * 359.97438 * 10 9 8 36 36 H 1.08000 * 119.72057 * 180.30581 * 13 11 10 37 37 H 1.07990 * 120.02320 * 179.71746 * 14 13 11 38 38 H 0.97003 * 119.99900 * 180.02562 * 19 18 16 39 39 H 1.09001 * 109.62721 * 68.25284 * 24 5 4 40 40 H 1.09002 * 109.62324 * 188.83303 * 24 5 4 41 41 H 1.08999 * 109.49533 * 292.70513 * 25 2 1 42 42 H 1.09001 * 109.49453 * 52.78555 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 3.5164 1.3310 -0.1826 5 7 4.0869 0.4458 0.8441 6 6 5.1262 0.8665 1.6404 7 7 5.5557 0.1054 2.6071 8 7 5.7132 2.0917 1.4160 9 6 6.6713 2.5756 2.2993 10 6 6.7403 2.0839 3.5937 11 6 7.6957 2.5698 4.4684 12 17 7.7745 1.9488 6.0877 13 6 8.5966 3.5471 4.0607 14 6 8.5466 4.0519 2.7944 15 6 7.5841 3.5745 1.8850 16 6 7.5295 4.0876 0.5725 17 1 7.2241 3.4503 -0.2442 18 6 7.8711 5.4224 0.3284 19 7 8.1387 5.8169 -0.8905 20 14 7.9452 6.6410 1.7421 21 1 9.2936 6.5980 2.3626 22 1 7.6793 8.0095 1.2303 23 1 6.9215 6.2846 2.7571 24 6 3.5204 -0.9033 0.9925 25 6 1.9954 -0.7729 1.1328 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.7556 1.8531 0.9479 30 1 1.5457 1.9341 -0.8180 31 1 3.9256 2.3349 -0.0689 32 1 3.7591 0.9468 -1.1733 33 1 5.1969 -0.7892 2.7161 34 1 5.4581 2.6172 0.6417 35 1 6.0477 1.3221 3.9194 36 1 9.3398 3.9128 4.7537 37 1 9.2478 4.8141 2.4884 38 1 8.3759 6.7421 -1.0598 39 1 3.7605 -1.5001 0.1126 40 1 3.9322 -1.3773 1.8835 41 1 1.7555 -0.2614 2.0650 42 1 1.5456 -1.7658 1.1362 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168746551.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:00:02 Heat of formation + Delta-G solvation = 79.892820 kcal Electronic energy + Delta-G solvation = -25131.411111 eV Core-core repulsion = 21559.242663 eV Total energy + Delta-G solvation = -3572.168449 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 322.126 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.81152 -38.46774 -36.75217 -35.42384 -33.97804 -33.51454 -32.26452 -30.90733 -30.10790 -28.77454 -27.76394 -25.06908 -24.31893 -23.78642 -22.09758 -21.17353 -20.40793 -19.01083 -18.03562 -17.43398 -16.48342 -15.73843 -15.36302 -15.18243 -15.04465 -14.84712 -14.65940 -14.52309 -14.05880 -13.71133 -13.29080 -12.89665 -12.73610 -12.67049 -12.43458 -12.25661 -12.07720 -11.82505 -11.50923 -11.43438 -11.26043 -11.23444 -10.91107 -10.85545 -10.35830 -10.09081 -10.01336 -9.77499 -9.17490 -9.09068 -8.64382 -8.47986 -7.74108 -7.50941 -7.02330 -6.84152 -4.51514 2.40615 2.61406 2.90711 3.08168 3.14727 3.27200 3.38314 3.48653 3.68186 3.92703 4.14536 4.44261 4.69983 4.76220 4.84254 5.06132 5.10541 5.25236 5.28619 5.30286 5.33188 5.44777 5.57642 5.59894 5.69141 5.92603 6.01270 6.10615 6.21025 6.56872 6.66851 6.68480 6.75307 6.79479 7.01558 7.11965 7.24991 7.40573 7.49944 7.69780 7.85629 8.07534 8.26248 8.29959 8.62172 8.68860 9.25576 10.00151 Molecular weight = 322.13amu Principal moments of inertia in cm(-1) A = 0.011064 B = 0.004563 C = 0.003444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2530.177667 B = 6134.619897 C = 8127.734247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.542 5.542 3 C 0.042 3.958 4 C 0.120 3.880 5 N -0.659 5.659 6 C 0.635 3.365 7 N -0.813 5.813 8 N -0.635 5.635 9 C 0.080 3.920 10 C -0.081 4.081 11 C -0.127 4.127 12 Cl -0.125 7.125 13 C -0.086 4.086 14 C -0.218 4.218 15 C 0.076 3.924 16 C -0.454 4.454 17 H 0.090 0.910 18 C 0.087 3.913 19 N -0.808 5.808 20 Si 0.910 3.090 21 H -0.265 1.265 22 H -0.292 1.292 23 H -0.248 1.248 24 C 0.133 3.867 25 C 0.042 3.958 26 H 0.069 0.931 27 H 0.068 0.932 28 H 0.024 0.976 29 H 0.039 0.961 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.071 0.929 33 H 0.325 0.675 34 H 0.411 0.589 35 H 0.159 0.841 36 H 0.101 0.899 37 H 0.114 0.886 38 H 0.286 0.714 39 H 0.070 0.930 40 H 0.085 0.915 41 H 0.039 0.961 42 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.239 -7.264 0.501 14.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.267 5.267 3 C -0.087 4.087 4 C -0.006 4.006 5 N -0.387 5.387 6 C 0.272 3.728 7 N -0.463 5.463 8 N -0.268 5.268 9 C -0.016 4.016 10 C -0.103 4.103 11 C -0.155 4.155 12 Cl -0.097 7.097 13 C -0.106 4.106 14 C -0.238 4.238 15 C 0.071 3.929 16 C -0.483 4.483 17 H 0.107 0.893 18 C -0.132 4.132 19 N -0.432 5.432 20 Si 0.737 3.263 21 H -0.191 1.191 22 H -0.219 1.219 23 H -0.171 1.171 24 C 0.009 3.991 25 C -0.087 4.087 26 H 0.088 0.912 27 H 0.086 0.914 28 H 0.043 0.957 29 H 0.057 0.943 30 H 0.103 0.897 31 H 0.102 0.898 32 H 0.089 0.911 33 H 0.144 0.856 34 H 0.250 0.750 35 H 0.176 0.824 36 H 0.119 0.881 37 H 0.132 0.868 38 H 0.096 0.904 39 H 0.088 0.912 40 H 0.103 0.897 41 H 0.057 0.943 42 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -11.361 -7.255 0.694 13.498 hybrid contribution -0.956 0.670 0.398 1.233 sum -12.317 -6.585 1.092 14.010 Atomic orbital electron populations 1.22361 0.87123 1.02038 1.00740 1.61920 1.07728 1.13856 1.43155 1.22502 0.95717 0.89225 1.01230 1.21596 0.91940 0.94872 0.92168 1.47685 1.36345 1.15161 1.39529 1.19072 0.82764 0.86370 0.84617 1.70105 1.41073 1.11474 1.23633 1.41098 1.40928 1.16156 1.28620 1.17292 0.92868 1.02840 0.88637 1.21225 0.98428 0.99861 0.90794 1.20084 1.05131 1.05080 0.85220 1.98228 1.98423 1.87864 1.25205 1.20229 0.97868 0.96368 0.96154 1.20617 1.02290 1.06445 0.94477 1.17512 0.89330 0.92635 0.93399 1.19173 1.40135 0.96191 0.92809 0.89254 1.26094 0.90679 0.99649 0.96766 1.69701 1.32218 1.19227 1.22099 0.86373 0.80849 0.77658 0.81440 1.19070 1.21897 1.17147 1.21551 0.91576 0.83658 1.02347 1.22588 0.95554 0.98610 0.91965 0.91208 0.91351 0.95709 0.94254 0.89653 0.89836 0.91122 0.85626 0.74977 0.82409 0.88070 0.86845 0.90391 0.91161 0.89723 0.94289 0.89798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.58 60.06 0.58 0.78 16 2 N -0.54 -5.40 4.88 -242.31 -1.18 -6.58 16 3 C 0.04 0.44 5.62 -3.70 -0.02 0.42 16 4 C 0.12 1.46 6.53 -3.60 -0.02 1.43 16 5 N -0.66 -9.08 3.08 -173.84 -0.54 -9.61 16 6 C 0.64 11.16 8.26 -319.77 -2.64 8.51 16 7 N -0.81 -14.95 10.04 30.19 0.30 -14.65 16 8 N -0.63 -12.42 5.12 -10.76 -0.06 -12.47 16 9 C 0.08 1.80 6.52 -83.21 -0.54 1.26 16 10 C -0.08 -1.81 8.47 -39.40 -0.33 -2.14 16 11 C -0.13 -2.80 6.34 -39.24 -0.25 -3.05 16 12 Cl -0.13 -2.42 28.94 -51.86 -1.50 -3.92 16 13 C -0.09 -1.91 9.74 -39.94 -0.39 -2.30 16 14 C -0.22 -5.12 7.24 -39.29 -0.28 -5.41 16 15 C 0.08 1.84 5.06 -106.64 -0.54 1.30 16 16 C -0.45 -11.27 8.75 -37.90 -0.33 -11.60 16 17 H 0.09 2.29 7.50 -52.48 -0.39 1.90 16 18 C 0.09 2.13 5.41 -17.33 -0.09 2.04 16 19 N -0.81 -20.26 13.93 55.55 0.77 -19.48 16 20 Si 0.91 19.86 24.72 -169.99 -4.20 15.66 16 21 H -0.26 -5.66 6.34 56.52 0.36 -5.31 16 22 H -0.29 -6.15 7.11 56.52 0.40 -5.75 16 23 H -0.25 -5.58 7.11 56.52 0.40 -5.18 16 24 C 0.13 1.48 6.64 -3.36 -0.02 1.46 16 25 C 0.04 0.41 5.64 -3.46 -0.02 0.39 16 26 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.07 0.47 8.08 -51.93 -0.42 0.05 16 28 H 0.02 0.20 8.14 -51.92 -0.42 -0.23 16 29 H 0.04 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.09 0.77 8.11 -51.93 -0.42 0.35 16 31 H 0.08 1.06 5.92 -51.93 -0.31 0.75 16 32 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 33 H 0.32 5.19 6.30 -40.82 -0.26 4.93 16 34 H 0.41 7.60 5.33 -40.82 -0.22 7.39 16 35 H 0.16 3.49 5.32 -52.49 -0.28 3.21 16 36 H 0.10 2.01 8.06 -52.49 -0.42 1.59 16 37 H 0.11 2.63 4.75 -52.49 -0.25 2.39 16 38 H 0.29 6.55 8.30 -40.82 -0.34 6.22 16 39 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 40 H 0.08 0.92 5.70 -51.93 -0.30 0.62 16 41 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.08 0.66 8.06 -51.93 -0.42 0.24 16 LS Contribution 341.33 15.07 5.14 5.14 Total: -1.00 -27.22 341.33 -11.57 -38.79 By element: Atomic # 1 Polarization: 19.41 SS G_CDS: -5.40 Total: 14.02 kcal Atomic # 6 Polarization: -1.98 SS G_CDS: -4.92 Total: -6.90 kcal Atomic # 7 Polarization: -62.10 SS G_CDS: -0.70 Total: -62.79 kcal Atomic # 14 Polarization: 19.86 SS G_CDS: -4.20 Total: 15.66 kcal Atomic # 17 Polarization: -2.42 SS G_CDS: -1.50 Total: -3.92 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -27.22 -11.57 -38.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168746551.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.683 kcal (2) G-P(sol) polarization free energy of solvation -27.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.790 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds