Wall clock time and date at job start Tue Mar 31 2020 13:00:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46896 * 111.00314 * 2 1 4 4 C 1.53245 * 109.34040 * 187.25611 * 3 2 1 5 5 N 1.47086 * 108.51894 * 306.16944 * 4 3 2 6 6 C 1.37515 * 120.87941 * 231.18873 * 5 4 3 7 7 N 1.30317 * 119.99656 * 175.11413 * 6 5 4 8 8 N 1.37699 * 120.00007 * 355.10810 * 6 5 4 9 9 C 1.39007 * 119.99965 * 173.58323 * 8 6 5 10 10 C 1.38629 * 120.27570 * 339.07033 * 9 8 6 11 11 C 1.38347 * 120.01217 * 180.02562 * 10 9 8 12 12 Cl 1.73607 * 119.70158 * 179.97438 * 11 10 9 13 13 C 1.39038 * 120.59274 * 359.71915 * 11 10 9 14 14 C 1.36412 * 120.56668 * 0.55837 * 13 11 10 15 15 C 1.40759 * 119.95661 * 359.44956 * 14 13 11 16 16 C 1.41026 * 120.28761 * 180.25010 * 15 14 13 17 17 H 1.08003 * 119.99743 * 147.38228 * 16 15 14 18 18 C 1.39920 * 120.00027 * 327.38413 * 16 15 14 19 19 N 1.30886 * 119.99709 * 163.33412 * 18 16 15 20 20 Si 1.86795 * 119.99957 * 343.33414 * 18 16 15 21 21 H 1.48499 * 109.47204 * 86.79997 * 20 18 16 22 22 H 1.48505 * 109.46915 * 206.79849 * 20 18 16 23 23 H 1.48502 * 109.47185 * 326.79597 * 20 18 16 24 24 C 1.47077 * 118.23524 * 51.46036 * 5 4 3 25 25 C 1.46897 * 111.00063 * 124.30413 * 2 1 3 26 26 H 1.09005 * 109.47054 * 59.99606 * 1 2 3 27 27 H 1.09001 * 109.47518 * 180.02562 * 1 2 3 28 28 H 1.09008 * 109.47243 * 299.99880 * 1 2 3 29 29 H 1.09001 * 109.49342 * 67.29685 * 3 2 1 30 30 H 1.09003 * 109.51550 * 307.22891 * 3 2 1 31 31 H 1.09001 * 109.62756 * 186.46557 * 4 3 2 32 32 H 1.08994 * 109.78986 * 65.97722 * 4 3 2 33 33 H 0.96997 * 120.00127 * 5.44843 * 7 6 5 34 34 H 0.96995 * 120.00256 * 353.59159 * 8 6 5 35 35 H 1.07993 * 119.99544 * 359.97438 * 10 9 8 36 36 H 1.08000 * 119.72057 * 180.30581 * 13 11 10 37 37 H 1.07990 * 120.02320 * 179.71746 * 14 13 11 38 38 H 0.97003 * 119.99900 * 180.02562 * 19 18 16 39 39 H 1.09001 * 109.62721 * 68.25284 * 24 5 4 40 40 H 1.09002 * 109.62324 * 188.83303 * 24 5 4 41 41 H 1.08999 * 109.49533 * 292.70513 * 25 2 1 42 42 H 1.09001 * 109.49453 * 52.78555 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 3.5164 1.3310 -0.1826 5 7 4.0869 0.4458 0.8441 6 6 5.1262 0.8665 1.6404 7 7 5.5557 0.1054 2.6071 8 7 5.7132 2.0917 1.4160 9 6 6.6713 2.5756 2.2993 10 6 6.7403 2.0839 3.5937 11 6 7.6957 2.5698 4.4684 12 17 7.7745 1.9488 6.0877 13 6 8.5966 3.5471 4.0607 14 6 8.5466 4.0519 2.7944 15 6 7.5841 3.5745 1.8850 16 6 7.5295 4.0876 0.5725 17 1 7.2241 3.4503 -0.2442 18 6 7.8711 5.4224 0.3284 19 7 8.1387 5.8169 -0.8905 20 14 7.9452 6.6410 1.7421 21 1 9.2936 6.5980 2.3626 22 1 7.6793 8.0095 1.2303 23 1 6.9215 6.2846 2.7571 24 6 3.5204 -0.9033 0.9925 25 6 1.9954 -0.7729 1.1328 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.7556 1.8531 0.9479 30 1 1.5457 1.9341 -0.8180 31 1 3.9256 2.3349 -0.0689 32 1 3.7591 0.9468 -1.1733 33 1 5.1969 -0.7892 2.7161 34 1 5.4581 2.6172 0.6417 35 1 6.0477 1.3221 3.9194 36 1 9.3398 3.9128 4.7537 37 1 9.2478 4.8141 2.4884 38 1 8.3759 6.7421 -1.0598 39 1 3.7605 -1.5001 0.1126 40 1 3.9322 -1.3773 1.8835 41 1 1.7555 -0.2614 2.0650 42 1 1.5456 -1.7658 1.1362 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168746551.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:00:01 Heat of formation + Delta-G solvation = 65.985880 kcal Electronic energy + Delta-G solvation = -25132.014162 eV Core-core repulsion = 21559.242663 eV Total energy + Delta-G solvation = -3572.771499 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 322.126 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.05152 -39.89696 -38.04118 -37.05142 -35.44523 -35.17520 -33.47738 -32.19481 -31.67901 -30.28085 -28.82385 -26.81328 -25.28989 -24.73024 -23.67174 -22.61709 -21.78091 -20.33685 -19.45426 -19.17899 -17.94623 -17.16516 -16.64747 -16.20251 -16.07420 -16.04960 -15.79581 -15.72023 -15.53866 -15.13833 -14.97657 -14.40722 -14.38334 -14.02894 -13.60819 -13.56001 -13.21275 -13.01030 -12.83319 -12.65222 -12.58763 -12.36121 -12.17916 -12.07711 -11.98026 -11.78514 -11.78190 -11.48104 -10.95320 -10.59812 -9.93781 -9.48001 -9.28671 -8.95299 -8.86195 -8.51298 -6.38531 0.64440 0.85050 1.32869 1.41625 1.52279 1.61213 1.76198 2.04713 2.16411 2.62391 2.80030 2.89863 3.49465 3.80554 3.92313 4.02072 4.18173 4.24961 4.33502 4.38679 4.49515 4.53779 4.59484 4.61645 4.71494 4.73455 4.81254 4.86405 5.00346 5.02252 5.03703 5.25299 5.28632 5.48426 5.67288 5.77211 5.81174 5.95589 5.96033 6.09071 6.15227 6.29459 6.52067 6.68032 6.84842 6.99603 7.89441 8.20792 Molecular weight = 322.13amu Principal moments of inertia in cm(-1) A = 0.011064 B = 0.004563 C = 0.003444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2530.177667 B = 6134.619897 C = 8127.734247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.548 5.548 3 C 0.049 3.951 4 C 0.116 3.884 5 N -0.654 5.654 6 C 0.633 3.367 7 N -0.836 5.836 8 N -0.641 5.641 9 C 0.083 3.917 10 C -0.092 4.092 11 C -0.125 4.125 12 Cl -0.099 7.099 13 C -0.094 4.094 14 C -0.226 4.226 15 C 0.056 3.944 16 C -0.471 4.471 17 H 0.068 0.932 18 C 0.059 3.941 19 N -0.842 5.842 20 Si 0.954 3.046 21 H -0.256 1.256 22 H -0.280 1.280 23 H -0.260 1.260 24 C 0.130 3.870 25 C 0.048 3.952 26 H 0.078 0.922 27 H 0.082 0.918 28 H 0.022 0.978 29 H 0.026 0.974 30 H 0.102 0.898 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.336 0.664 34 H 0.413 0.587 35 H 0.163 0.837 36 H 0.125 0.875 37 H 0.114 0.886 38 H 0.293 0.707 39 H 0.078 0.922 40 H 0.087 0.913 41 H 0.027 0.973 42 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.331 -8.055 1.432 15.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.273 5.273 3 C -0.080 4.080 4 C -0.008 4.008 5 N -0.382 5.382 6 C 0.269 3.731 7 N -0.487 5.487 8 N -0.274 5.274 9 C -0.014 4.014 10 C -0.115 4.115 11 C -0.153 4.153 12 Cl -0.071 7.071 13 C -0.114 4.114 14 C -0.247 4.247 15 C 0.051 3.949 16 C -0.501 4.501 17 H 0.086 0.914 18 C -0.157 4.157 19 N -0.468 5.468 20 Si 0.779 3.221 21 H -0.182 1.182 22 H -0.206 1.206 23 H -0.184 1.184 24 C 0.006 3.994 25 C -0.081 4.081 26 H 0.096 0.904 27 H 0.101 0.899 28 H 0.041 0.959 29 H 0.045 0.955 30 H 0.120 0.880 31 H 0.091 0.909 32 H 0.094 0.906 33 H 0.156 0.844 34 H 0.253 0.747 35 H 0.180 0.820 36 H 0.143 0.857 37 H 0.131 0.869 38 H 0.103 0.897 39 H 0.096 0.904 40 H 0.105 0.895 41 H 0.045 0.955 42 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -12.492 -8.079 1.603 14.963 hybrid contribution -0.693 0.726 0.182 1.020 sum -13.186 -7.353 1.785 15.203 Atomic orbital electron populations 1.22420 0.85585 1.03111 1.01053 1.61953 1.09108 1.13184 1.43079 1.22420 0.94337 0.89991 1.01236 1.21698 0.93203 0.94095 0.91849 1.47762 1.35143 1.16314 1.38962 1.18990 0.83362 0.85582 0.85199 1.69972 1.42035 1.12352 1.24356 1.41086 1.40795 1.17106 1.28404 1.17472 0.92774 1.01954 0.89228 1.21393 0.99019 1.00263 0.90814 1.20318 1.04291 1.04283 0.86390 1.98234 1.98326 1.87477 1.23062 1.20447 0.98480 0.96347 0.96108 1.20738 1.02169 1.06668 0.95089 1.17653 0.90180 0.93681 0.93361 1.19096 1.41728 0.96541 0.92714 0.91429 1.26591 0.90315 1.00472 0.98274 1.69720 1.33849 1.20046 1.23228 0.85695 0.80705 0.76629 0.79103 1.18184 1.20604 1.18393 1.21774 0.92611 0.82180 1.02817 1.22564 0.94398 0.99772 0.91374 0.90354 0.89932 0.95930 0.95523 0.87968 0.90889 0.90610 0.84361 0.74744 0.82032 0.85741 0.86853 0.89654 0.90374 0.89462 0.95493 0.87314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 9.58 127.69 1.22 1.57 16 2 N -0.55 -9.77 4.88 -920.52 -4.49 -14.26 16 3 C 0.05 0.98 5.62 86.39 0.49 1.46 16 4 C 0.12 2.79 6.53 86.35 0.56 3.35 16 5 N -0.65 -17.62 3.08 -703.92 -2.17 -19.79 16 6 C 0.63 22.11 8.26 260.42 2.15 24.26 16 7 N -0.84 -30.23 10.04 -58.39 -0.59 -30.82 16 8 N -0.64 -25.44 5.12 -187.95 -0.96 -26.40 16 9 C 0.08 3.78 6.52 38.91 0.25 4.03 16 10 C -0.09 -4.07 8.47 22.39 0.19 -3.88 16 11 C -0.12 -5.31 6.34 22.49 0.14 -5.17 16 12 Cl -0.10 -3.62 28.94 -2.72 -0.08 -3.70 16 13 C -0.09 -4.02 9.74 22.04 0.21 -3.80 16 14 C -0.23 -10.53 7.24 22.46 0.16 -10.37 16 15 C 0.06 2.74 5.06 -21.17 -0.11 2.63 16 16 C -0.47 -24.07 8.75 23.36 0.20 -23.86 16 17 H 0.07 3.64 7.50 -2.91 -0.02 3.62 16 18 C 0.06 2.94 5.41 85.24 0.46 3.40 16 19 N -0.84 -43.03 13.93 21.83 0.30 -42.72 16 20 Si 0.95 40.72 24.72 68.60 1.70 42.42 16 21 H -0.26 -10.51 6.34 99.48 0.63 -9.88 16 22 H -0.28 -11.24 7.11 99.48 0.71 -10.54 16 23 H -0.26 -11.49 7.11 99.48 0.71 -10.79 16 24 C 0.13 2.69 6.64 86.50 0.57 3.26 16 25 C 0.05 0.83 5.64 86.54 0.49 1.32 16 26 H 0.08 0.92 8.14 -2.38 -0.02 0.90 16 27 H 0.08 0.88 8.08 -2.39 -0.02 0.86 16 28 H 0.02 0.31 8.14 -2.38 -0.02 0.29 16 29 H 0.03 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.10 1.68 8.11 -2.39 -0.02 1.66 16 31 H 0.07 1.89 5.92 -2.39 -0.01 1.88 16 32 H 0.08 1.74 8.14 -2.39 -0.02 1.73 16 33 H 0.34 10.43 6.30 -92.71 -0.58 9.85 16 34 H 0.41 15.83 5.33 -92.71 -0.49 15.33 16 35 H 0.16 7.02 5.32 -2.91 -0.02 7.00 16 36 H 0.12 4.66 8.06 -2.91 -0.02 4.64 16 37 H 0.11 5.20 4.75 -2.92 -0.01 5.18 16 38 H 0.29 13.60 8.30 -92.71 -0.77 12.83 16 39 H 0.08 1.53 8.14 -2.39 -0.02 1.52 16 40 H 0.09 1.76 5.70 -2.39 -0.01 1.75 16 41 H 0.03 0.54 8.14 -2.39 -0.02 0.52 16 42 H 0.11 1.38 8.06 -2.39 -0.02 1.36 16 Total: -1.00 -57.43 341.33 0.64 -56.79 By element: Atomic # 1 Polarization: 40.36 SS G_CDS: -0.08 Total: 40.28 kcal Atomic # 6 Polarization: -8.81 SS G_CDS: 7.01 Total: -1.80 kcal Atomic # 7 Polarization: -126.09 SS G_CDS: -7.91 Total: -134.00 kcal Atomic # 14 Polarization: 40.72 SS G_CDS: 1.70 Total: 42.42 kcal Atomic # 17 Polarization: -3.62 SS G_CDS: -0.08 Total: -3.70 kcal Total: -57.43 0.64 -56.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168746551.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.778 kcal (2) G-P(sol) polarization free energy of solvation -57.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.792 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds