Wall clock time and date at job start Tue Mar 31 2020 13:38:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86802 * 120.00010 * 2 1 4 4 H 1.48495 * 109.47166 * 270.00131 * 3 2 1 5 5 H 1.48500 * 109.46807 * 30.00000 * 3 2 1 6 6 H 1.48503 * 109.47097 * 149.99485 * 3 2 1 7 7 C 1.37875 * 120.00264 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00433 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99882 * 0.02562 * 7 2 1 10 10 C 1.50702 * 109.47375 * 179.97438 * 9 7 2 11 11 C 1.38284 * 119.92910 * 89.99517 * 10 9 7 12 12 C 1.38102 * 120.07730 * 179.97438 * 11 10 9 13 13 C 1.38905 * 119.92398 * 0.28542 * 12 11 10 14 14 N 1.39669 * 120.07711 * 179.72013 * 13 12 11 15 15 C 1.46502 * 120.00681 * 179.97438 * 14 13 12 16 16 C 1.50691 * 109.47429 * 179.97438 * 15 14 13 17 17 C 1.38391 * 119.83629 * 90.00640 * 16 15 14 18 18 C 1.38476 * 120.18767 * 180.02562 * 17 16 15 19 19 C 1.37570 * 119.95576 * 359.97438 * 18 17 16 20 20 C 1.39678 * 120.33307 * 0.02562 * 19 18 17 21 21 C 1.37938 * 119.84496 * 269.73081 * 16 15 14 22 22 C 1.47542 * 108.27648 * 179.97438 * 20 19 18 23 23 O 1.21557 * 124.85314 * 180.02562 * 22 20 19 24 24 N 1.34420 * 110.29233 * 0.02562 * 22 20 19 25 25 C 1.46730 * 108.74875 * 359.97438 * 24 22 20 26 26 C 1.38913 * 119.85112 * 359.48742 * 13 12 11 27 27 C 1.38104 * 119.92366 * 0.48549 * 26 13 12 28 28 H 0.96990 * 119.99719 * 359.97438 * 1 2 3 29 29 H 1.08998 * 109.47318 * 59.99950 * 9 7 2 30 30 H 1.09005 * 109.47405 * 299.99623 * 9 7 2 31 31 H 1.08008 * 119.95755 * 0.02755 * 11 10 9 32 32 H 1.08002 * 120.03497 * 180.02562 * 12 11 10 33 33 H 0.97008 * 120.00083 * 0.02562 * 14 13 12 34 34 H 1.08995 * 109.47221 * 300.00552 * 15 14 13 35 35 H 1.09006 * 109.46597 * 60.00077 * 15 14 13 36 36 H 1.08000 * 119.90871 * 359.97264 * 17 16 15 37 37 H 1.07994 * 120.02053 * 180.02562 * 18 17 16 38 38 H 1.07998 * 120.08196 * 359.97438 * 21 16 15 39 39 H 0.97001 * 125.62653 * 180.02562 * 24 22 20 40 40 H 1.08999 * 110.09649 * 240.79940 * 25 24 22 41 41 H 1.09004 * 110.09605 * 119.19968 * 25 24 22 42 42 H 1.07997 * 120.03958 * 180.21259 * 26 13 12 43 43 H 1.08007 * 119.96398 * 179.74829 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7002 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2304 -3.6446 0.0005 11 6 2.6788 -4.1690 1.1990 12 6 3.5758 -5.2190 1.2025 13 6 4.0322 -5.7446 0.0005 14 7 4.9439 -6.8027 0.0004 15 6 5.4238 -7.3562 -1.2683 16 6 6.3909 -8.4785 -0.9930 17 6 5.9237 -9.7753 -0.8692 18 6 6.8060 -10.8120 -0.6156 19 6 8.1510 -10.5534 -0.4868 20 6 8.6334 -9.2484 -0.6099 21 6 7.7383 -8.2092 -0.8712 22 6 10.0970 -9.2768 -0.4258 23 8 10.8221 -8.3023 -0.4724 24 7 10.5140 -10.5345 -0.1992 25 6 9.3501 -11.4277 -0.2174 26 6 3.5761 -5.2186 -1.2016 27 6 2.6787 -4.1689 -1.1980 28 1 -0.4849 0.8400 0.0004 29 1 0.6248 -2.5571 -0.8896 30 1 0.6241 -2.5568 0.8903 31 1 2.3264 -3.7573 2.1333 32 1 3.9253 -5.6283 2.1389 33 1 5.2588 -7.1717 0.8404 34 1 4.5785 -7.7369 -1.8415 35 1 5.9269 -6.5750 -1.8383 36 1 4.8679 -9.9791 -0.9697 37 1 6.4385 -11.8230 -0.5199 38 1 8.0993 -7.1965 -0.9734 39 1 11.4327 -10.8065 -0.0479 40 1 9.2434 -11.9234 0.7475 41 1 9.4588 -12.1685 -1.0096 42 1 3.9263 -5.6272 -2.1380 43 1 2.3268 -3.7568 -2.1323 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169766348.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:38:47 Heat of formation + Delta-G solvation = 23.764231 kcal Electronic energy + Delta-G solvation = -24519.167418 eV Core-core repulsion = 20914.705149 eV Total energy + Delta-G solvation = -3604.462269 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.53178 -39.15765 -38.48403 -36.71155 -35.33027 -33.10644 -31.92804 -31.40248 -30.22732 -29.90835 -27.84323 -26.33802 -25.19156 -24.13016 -22.74599 -22.12475 -21.26349 -20.62364 -19.95566 -17.86607 -17.28793 -16.68816 -16.32408 -16.24257 -16.14948 -15.48321 -15.37972 -14.77936 -14.65837 -14.13615 -14.08261 -13.85702 -13.64349 -13.58479 -13.41360 -12.84093 -12.69878 -12.58956 -12.44677 -12.21253 -11.82685 -11.46696 -11.20829 -11.17402 -10.63502 -10.49753 -10.39045 -10.08826 -9.90646 -9.77208 -9.46572 -9.40019 -9.19234 -9.00054 -8.34765 -8.20894 -6.76201 -5.94987 -3.99254 0.28333 0.73201 2.15020 2.32276 2.38634 2.65795 3.23404 3.35384 3.41361 3.46310 3.55804 3.84213 3.88552 4.31697 4.36460 4.46745 4.64581 4.70088 4.71712 4.80589 4.91883 5.07300 5.27109 5.37647 5.45205 5.50719 5.56611 5.60199 5.63625 5.74155 6.04267 6.06885 6.15520 6.21892 6.33227 6.35181 6.42917 6.45499 6.74153 6.87253 7.32852 7.33629 7.43812 7.63924 7.73616 7.84756 8.00605 8.00827 8.05565 8.43967 9.06707 9.64163 11.13395 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.023334 B = 0.002007 C = 0.001902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.683413 B =13944.983362 C =14719.608329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.507 4.507 8 H 0.056 0.944 9 C 0.053 3.947 10 C -0.083 4.083 11 C -0.080 4.080 12 C -0.191 4.191 13 C 0.180 3.820 14 N -0.754 5.754 15 C 0.172 3.828 16 C -0.106 4.106 17 C -0.066 4.066 18 C -0.105 4.105 19 C -0.083 4.083 20 C -0.163 4.163 21 C -0.025 4.025 22 C 0.561 3.439 23 O -0.523 6.523 24 N -0.726 5.726 25 C 0.141 3.859 26 C -0.194 4.194 27 C -0.081 4.081 28 H 0.261 0.739 29 H 0.025 0.975 30 H 0.025 0.975 31 H 0.116 0.884 32 H 0.108 0.892 33 H 0.394 0.606 34 H 0.068 0.932 35 H 0.067 0.933 36 H 0.137 0.863 37 H 0.134 0.866 38 H 0.136 0.864 39 H 0.425 0.575 40 H 0.097 0.903 41 H 0.097 0.903 42 H 0.109 0.891 43 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.693 -28.712 -1.377 32.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.546 4.546 8 H 0.074 0.926 9 C 0.016 3.984 10 C -0.085 4.085 11 C -0.099 4.099 12 C -0.213 4.213 13 C 0.081 3.919 14 N -0.388 5.388 15 C 0.047 3.953 16 C -0.106 4.106 17 C -0.085 4.085 18 C -0.123 4.123 19 C -0.084 4.084 20 C -0.166 4.166 21 C -0.044 4.044 22 C 0.348 3.652 23 O -0.400 6.400 24 N -0.383 5.383 25 C 0.017 3.983 26 C -0.216 4.216 27 C -0.100 4.100 28 H 0.070 0.930 29 H 0.043 0.957 30 H 0.043 0.957 31 H 0.134 0.866 32 H 0.126 0.874 33 H 0.228 0.772 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.155 0.845 37 H 0.152 0.848 38 H 0.153 0.847 39 H 0.267 0.733 40 H 0.115 0.885 41 H 0.115 0.885 42 H 0.127 0.873 43 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 15.888 -28.073 -1.615 32.298 hybrid contribution 1.016 0.604 0.381 1.242 sum 16.905 -27.469 -1.234 32.278 Atomic orbital electron populations 1.69961 1.05992 1.26624 1.50987 1.25023 0.94870 0.99185 0.95426 0.86572 0.79872 0.83353 0.78120 1.20665 1.21257 1.19849 1.21134 0.93064 0.90094 1.50278 0.92555 1.18254 0.92517 0.89681 0.97978 1.20473 0.99050 0.97136 0.91835 1.20835 0.96111 0.94656 0.98269 1.20455 1.03966 1.01547 0.95355 1.17577 0.91177 0.89043 0.94067 1.44372 1.50119 1.37947 1.06380 1.20060 0.94930 0.92654 0.87645 1.19929 0.93705 0.95115 1.01859 1.21336 1.00200 0.91611 0.95365 1.20287 0.90606 1.00013 1.01372 1.20470 0.94511 0.94816 0.98647 1.20323 0.94331 0.95004 1.06956 1.20842 0.91377 0.98891 0.93325 1.18302 0.87814 0.83039 0.76020 1.90846 1.61360 1.37038 1.50728 1.45781 1.10171 1.08199 1.74197 1.20458 0.82431 0.92086 1.03343 1.20506 1.04048 1.01647 0.95444 1.20851 0.96154 0.94725 0.98233 0.92986 0.95681 0.95672 0.86576 0.87440 0.77203 0.91424 0.91510 0.84502 0.84826 0.84655 0.73343 0.88483 0.88488 0.87321 0.86609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.91 13.29 55.43 0.74 -26.17 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 22.00 29.54 -169.99 -5.02 16.98 16 4 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 6 H -0.27 -6.67 7.11 56.52 0.40 -6.26 16 7 C -0.51 -14.52 9.09 -34.44 -0.31 -14.83 16 8 H 0.06 1.61 7.74 -52.49 -0.41 1.21 16 9 C 0.05 1.38 5.10 -29.03 -0.15 1.23 16 10 C -0.08 -1.85 5.07 -104.59 -0.53 -2.38 16 11 C -0.08 -1.60 9.69 -39.61 -0.38 -1.98 16 12 C -0.19 -3.24 9.90 -39.38 -0.39 -3.63 16 13 C 0.18 2.84 6.65 -83.79 -0.56 2.29 16 14 N -0.75 -9.03 5.72 -59.81 -0.34 -9.38 16 15 C 0.17 1.67 5.03 -5.20 -0.03 1.65 16 16 C -0.11 -0.88 5.24 -104.68 -0.55 -1.43 16 17 C -0.07 -0.43 9.70 -39.44 -0.38 -0.82 16 18 C -0.10 -0.56 10.03 -39.74 -0.40 -0.96 16 19 C -0.08 -0.53 6.38 -104.27 -0.66 -1.19 16 20 C -0.16 -1.52 6.26 -105.05 -0.66 -2.18 16 21 C -0.02 -0.24 9.74 -39.18 -0.38 -0.62 16 22 C 0.56 5.95 8.34 -12.63 -0.11 5.85 16 23 O -0.52 -7.77 18.04 5.32 0.10 -7.67 16 24 N -0.73 -4.47 6.41 -62.40 -0.40 -4.87 16 25 C 0.14 0.53 7.76 -5.01 -0.04 0.49 16 26 C -0.19 -3.26 9.31 -39.38 -0.37 -3.63 16 27 C -0.08 -1.61 9.69 -39.61 -0.38 -1.99 16 28 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 29 H 0.02 0.69 8.08 -51.93 -0.42 0.27 16 30 H 0.03 0.69 8.09 -51.93 -0.42 0.27 16 31 H 0.12 2.26 8.06 -52.48 -0.42 1.84 16 32 H 0.11 1.56 8.06 -52.49 -0.42 1.13 16 33 H 0.39 4.26 8.48 -40.82 -0.35 3.92 16 34 H 0.07 0.62 7.88 -51.93 -0.41 0.21 16 35 H 0.07 0.69 7.89 -51.93 -0.41 0.28 16 36 H 0.14 0.70 8.06 -52.49 -0.42 0.28 16 37 H 0.13 0.35 8.06 -52.49 -0.42 -0.07 16 38 H 0.14 1.39 8.06 -52.49 -0.42 0.96 16 39 H 0.43 1.69 8.96 -40.82 -0.37 1.33 16 40 H 0.10 0.17 8.14 -51.93 -0.42 -0.25 16 41 H 0.10 0.16 8.14 -51.93 -0.42 -0.26 16 42 H 0.11 1.55 6.73 -52.49 -0.35 1.20 16 43 H 0.12 2.24 8.06 -52.48 -0.42 1.82 16 LS Contribution 369.57 15.07 5.57 5.57 Total: -1.00 -34.85 369.57 -11.38 -46.24 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: -5.65 Total: 1.91 kcal Atomic # 6 Polarization: -16.24 SS G_CDS: -6.37 Total: -22.62 kcal Atomic # 7 Polarization: -40.41 SS G_CDS: -0.01 Total: -40.42 kcal Atomic # 8 Polarization: -7.77 SS G_CDS: 0.10 Total: -7.67 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -34.85 -11.38 -46.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169766348.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.004 kcal (2) G-P(sol) polarization free energy of solvation -34.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.239 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds