Wall clock time and date at job start Tue Mar 31 2020 13:38:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86802 * 120.00010 * 2 1 4 4 H 1.48495 * 109.47166 * 270.00131 * 3 2 1 5 5 H 1.48500 * 109.46807 * 30.00000 * 3 2 1 6 6 H 1.48503 * 109.47097 * 149.99485 * 3 2 1 7 7 C 1.37875 * 120.00264 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00433 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99882 * 0.02562 * 7 2 1 10 10 C 1.50702 * 109.47375 * 179.97438 * 9 7 2 11 11 C 1.38284 * 119.92910 * 89.99517 * 10 9 7 12 12 C 1.38102 * 120.07730 * 179.97438 * 11 10 9 13 13 C 1.38905 * 119.92398 * 0.28542 * 12 11 10 14 14 N 1.39669 * 120.07711 * 179.72013 * 13 12 11 15 15 C 1.46502 * 120.00681 * 179.97438 * 14 13 12 16 16 C 1.50691 * 109.47429 * 179.97438 * 15 14 13 17 17 C 1.38391 * 119.83629 * 90.00640 * 16 15 14 18 18 C 1.38476 * 120.18767 * 180.02562 * 17 16 15 19 19 C 1.37570 * 119.95576 * 359.97438 * 18 17 16 20 20 C 1.39678 * 120.33307 * 0.02562 * 19 18 17 21 21 C 1.37938 * 119.84496 * 269.73081 * 16 15 14 22 22 C 1.47542 * 108.27648 * 179.97438 * 20 19 18 23 23 O 1.21557 * 124.85314 * 180.02562 * 22 20 19 24 24 N 1.34420 * 110.29233 * 0.02562 * 22 20 19 25 25 C 1.46730 * 108.74875 * 359.97438 * 24 22 20 26 26 C 1.38913 * 119.85112 * 359.48742 * 13 12 11 27 27 C 1.38104 * 119.92366 * 0.48549 * 26 13 12 28 28 H 0.96990 * 119.99719 * 359.97438 * 1 2 3 29 29 H 1.08998 * 109.47318 * 59.99950 * 9 7 2 30 30 H 1.09005 * 109.47405 * 299.99623 * 9 7 2 31 31 H 1.08008 * 119.95755 * 0.02755 * 11 10 9 32 32 H 1.08002 * 120.03497 * 180.02562 * 12 11 10 33 33 H 0.97008 * 120.00083 * 0.02562 * 14 13 12 34 34 H 1.08995 * 109.47221 * 300.00552 * 15 14 13 35 35 H 1.09006 * 109.46597 * 60.00077 * 15 14 13 36 36 H 1.08000 * 119.90871 * 359.97264 * 17 16 15 37 37 H 1.07994 * 120.02053 * 180.02562 * 18 17 16 38 38 H 1.07998 * 120.08196 * 359.97438 * 21 16 15 39 39 H 0.97001 * 125.62653 * 180.02562 * 24 22 20 40 40 H 1.08999 * 110.09649 * 240.79940 * 25 24 22 41 41 H 1.09004 * 110.09605 * 119.19968 * 25 24 22 42 42 H 1.07997 * 120.03958 * 180.21259 * 26 13 12 43 43 H 1.08007 * 119.96398 * 179.74829 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7002 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2304 -3.6446 0.0005 11 6 2.6788 -4.1690 1.1990 12 6 3.5758 -5.2190 1.2025 13 6 4.0322 -5.7446 0.0005 14 7 4.9439 -6.8027 0.0004 15 6 5.4238 -7.3562 -1.2683 16 6 6.3909 -8.4785 -0.9930 17 6 5.9237 -9.7753 -0.8692 18 6 6.8060 -10.8120 -0.6156 19 6 8.1510 -10.5534 -0.4868 20 6 8.6334 -9.2484 -0.6099 21 6 7.7383 -8.2092 -0.8712 22 6 10.0970 -9.2768 -0.4258 23 8 10.8221 -8.3023 -0.4724 24 7 10.5140 -10.5345 -0.1992 25 6 9.3501 -11.4277 -0.2174 26 6 3.5761 -5.2186 -1.2016 27 6 2.6787 -4.1689 -1.1980 28 1 -0.4849 0.8400 0.0004 29 1 0.6248 -2.5571 -0.8896 30 1 0.6241 -2.5568 0.8903 31 1 2.3264 -3.7573 2.1333 32 1 3.9253 -5.6283 2.1389 33 1 5.2588 -7.1717 0.8404 34 1 4.5785 -7.7369 -1.8415 35 1 5.9269 -6.5750 -1.8383 36 1 4.8679 -9.9791 -0.9697 37 1 6.4385 -11.8230 -0.5199 38 1 8.0993 -7.1965 -0.9734 39 1 11.4327 -10.8065 -0.0479 40 1 9.2434 -11.9234 0.7475 41 1 9.4588 -12.1685 -1.0096 42 1 3.9263 -5.6272 -2.1380 43 1 2.3268 -3.7568 -2.1323 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169766348.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:38:46 Heat of formation + Delta-G solvation = 0.765936 kcal Electronic energy + Delta-G solvation = -24520.164699 eV Core-core repulsion = 20914.705149 eV Total energy + Delta-G solvation = -3605.459549 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -42.11298 -40.34941 -39.37392 -37.53606 -36.44398 -35.00582 -33.00226 -32.01095 -31.63258 -31.31830 -28.79506 -27.59695 -26.25264 -24.80503 -24.51304 -23.32757 -21.96920 -21.53893 -21.24232 -18.50705 -18.47851 -18.29972 -17.45572 -17.08702 -16.79249 -16.68284 -16.29511 -16.10509 -15.72502 -15.20490 -14.92585 -14.80337 -14.66440 -14.53612 -14.43288 -14.27873 -14.12297 -13.64004 -13.39141 -13.26433 -13.15573 -12.98107 -12.75718 -12.53889 -12.40350 -12.08930 -11.62004 -11.59859 -11.35462 -11.14559 -10.57834 -10.57122 -10.50163 -10.01014 -9.71872 -9.66313 -8.29985 -7.95076 -6.29419 -0.29319 0.17908 0.69323 0.90294 1.39451 1.40536 1.52234 1.66396 2.17754 2.41475 2.50292 2.93579 3.08633 3.12850 3.17929 3.37781 3.70672 3.85805 4.14311 4.19840 4.22875 4.26696 4.48749 4.52835 4.54649 4.59374 4.65121 4.75336 4.80117 4.81388 4.95398 5.03857 5.09552 5.21730 5.23963 5.38523 5.41597 5.46988 5.57196 5.66618 5.71545 5.81261 5.82481 5.92018 6.04104 6.25211 6.25892 6.57742 6.83926 6.93826 7.09658 7.38626 8.92199 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.023334 B = 0.002007 C = 0.001902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.683413 B =13944.983362 C =14719.608329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.001 3.999 3 Si 0.964 3.036 4 H -0.271 1.271 5 H -0.278 1.278 6 H -0.268 1.268 7 C -0.525 4.525 8 H 0.051 0.949 9 C 0.063 3.937 10 C -0.124 4.124 11 C -0.090 4.090 12 C -0.190 4.190 13 C 0.199 3.801 14 N -0.740 5.740 15 C 0.169 3.831 16 C -0.112 4.112 17 C -0.060 4.060 18 C -0.095 4.095 19 C -0.070 4.070 20 C -0.195 4.195 21 C -0.043 4.043 22 C 0.546 3.454 23 O -0.586 6.586 24 N -0.710 5.710 25 C 0.138 3.862 26 C -0.192 4.192 27 C -0.090 4.090 28 H 0.265 0.735 29 H -0.001 1.001 30 H -0.002 1.002 31 H 0.110 0.890 32 H 0.137 0.863 33 H 0.403 0.597 34 H 0.083 0.917 35 H 0.059 0.941 36 H 0.158 0.842 37 H 0.173 0.827 38 H 0.113 0.887 39 H 0.435 0.565 40 H 0.130 0.870 41 H 0.131 0.869 42 H 0.138 0.862 43 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.151 -32.435 -1.300 36.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.196 4.196 3 Si 0.788 3.212 4 H -0.197 1.197 5 H -0.204 1.204 6 H -0.193 1.193 7 C -0.563 4.563 8 H 0.069 0.931 9 C 0.026 3.974 10 C -0.126 4.126 11 C -0.109 4.109 12 C -0.212 4.212 13 C 0.097 3.903 14 N -0.373 5.373 15 C 0.046 3.954 16 C -0.113 4.113 17 C -0.079 4.079 18 C -0.113 4.113 19 C -0.072 4.072 20 C -0.198 4.198 21 C -0.063 4.063 22 C 0.334 3.666 23 O -0.468 6.468 24 N -0.366 5.366 25 C 0.015 3.985 26 C -0.214 4.214 27 C -0.109 4.109 28 H 0.073 0.927 29 H 0.017 0.983 30 H 0.017 0.983 31 H 0.128 0.872 32 H 0.154 0.846 33 H 0.238 0.762 34 H 0.101 0.899 35 H 0.078 0.922 36 H 0.175 0.825 37 H 0.190 0.810 38 H 0.131 0.869 39 H 0.278 0.722 40 H 0.148 0.852 41 H 0.149 0.851 42 H 0.155 0.845 43 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 17.374 -31.892 -1.532 36.350 hybrid contribution 0.628 1.515 0.351 1.677 sum 18.002 -30.377 -1.181 35.331 Atomic orbital electron populations 1.70084 1.07576 1.27776 1.51702 1.25940 0.95807 1.03053 0.94846 0.85468 0.78558 0.78612 0.78548 1.19680 1.20370 1.19265 1.21445 0.92970 0.91561 1.50297 0.93090 1.17987 0.92832 0.91302 0.95288 1.20154 1.00723 0.97759 0.93947 1.20826 0.97117 0.95818 0.97140 1.20646 1.02933 1.00467 0.97166 1.17645 0.90422 0.88952 0.93289 1.44464 1.48413 1.36373 1.08018 1.20181 0.95713 0.93081 0.86473 1.19724 0.92528 0.95645 1.03354 1.21633 1.01524 0.90818 0.93878 1.20684 0.89692 1.01447 0.99445 1.20847 0.95834 0.93686 0.96823 1.20364 0.93738 0.96639 1.09052 1.20777 0.92386 0.98287 0.94815 1.18736 0.88404 0.83629 0.75787 1.90797 1.62711 1.39203 1.54082 1.45839 1.11662 1.07200 1.71910 1.20852 0.79994 0.91410 1.06211 1.20683 1.02971 1.00543 0.97205 1.20848 0.97093 0.95831 0.97101 0.92668 0.98312 0.98348 0.87237 0.84560 0.76159 0.89863 0.92233 0.82465 0.80951 0.86902 0.72219 0.85238 0.85100 0.84455 0.87193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.79 13.29 21.45 0.28 -57.51 16 2 C 0.00 0.07 5.46 84.65 0.46 0.53 16 3 Si 0.96 45.98 29.54 68.60 2.03 48.00 16 4 H -0.27 -12.48 7.11 99.48 0.71 -11.78 16 5 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 6 H -0.27 -12.45 7.11 99.48 0.71 -11.75 16 7 C -0.52 -31.31 9.09 25.60 0.23 -31.08 16 8 H 0.05 3.02 7.74 -2.91 -0.02 3.00 16 9 C 0.06 3.53 5.10 29.10 0.15 3.68 16 10 C -0.12 -5.76 5.07 -19.84 -0.10 -5.86 16 11 C -0.09 -3.68 9.69 22.25 0.22 -3.47 16 12 C -0.19 -6.18 9.90 22.40 0.22 -5.96 16 13 C 0.20 5.88 6.65 38.21 0.25 6.14 16 14 N -0.74 -15.76 5.72 -343.15 -1.96 -17.72 16 15 C 0.17 2.89 5.03 85.63 0.43 3.32 16 16 C -0.11 -1.62 5.24 -19.90 -0.10 -1.73 16 17 C -0.06 -0.53 9.70 22.36 0.22 -0.32 16 18 C -0.09 -0.54 10.03 22.17 0.22 -0.31 16 19 C -0.07 -0.63 6.38 -19.63 -0.13 -0.76 16 20 C -0.19 -3.45 6.26 -20.14 -0.13 -3.57 16 21 C -0.04 -0.81 9.74 22.53 0.22 -0.59 16 22 C 0.55 11.58 8.34 86.75 0.72 12.31 16 23 O -0.59 -18.50 18.04 -3.90 -0.07 -18.57 16 24 N -0.71 -7.27 6.41 -469.81 -3.01 -10.29 16 25 C 0.14 0.41 7.76 85.63 0.66 1.07 16 26 C -0.19 -6.19 9.31 22.40 0.21 -5.98 16 27 C -0.09 -3.65 9.69 22.25 0.22 -3.44 16 28 H 0.26 15.35 8.31 -92.72 -0.77 14.58 16 29 H 0.00 -0.09 8.08 -2.39 -0.02 -0.11 16 30 H 0.00 -0.11 8.09 -2.38 -0.02 -0.13 16 31 H 0.11 4.46 8.06 -2.91 -0.02 4.44 16 32 H 0.14 3.60 8.06 -2.91 -0.02 3.58 16 33 H 0.40 7.50 8.48 -92.70 -0.79 6.72 16 34 H 0.08 1.23 7.88 -2.39 -0.02 1.21 16 35 H 0.06 1.14 7.89 -2.38 -0.02 1.12 16 36 H 0.16 0.79 8.06 -2.91 -0.02 0.77 16 37 H 0.17 -0.29 8.06 -2.91 -0.02 -0.31 16 38 H 0.11 2.52 8.06 -2.91 -0.02 2.49 16 39 H 0.43 2.65 8.96 -92.71 -0.83 1.82 16 40 H 0.13 -0.28 8.14 -2.39 -0.02 -0.30 16 41 H 0.13 -0.33 8.14 -2.38 -0.02 -0.34 16 42 H 0.14 3.59 6.73 -2.91 -0.02 3.57 16 43 H 0.11 4.45 8.06 -2.91 -0.02 4.42 16 Total: -1.00 -81.88 369.57 0.68 -81.20 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: -0.56 Total: 10.89 kcal Atomic # 6 Polarization: -39.99 SS G_CDS: 3.98 Total: -36.01 kcal Atomic # 7 Polarization: -80.82 SS G_CDS: -4.69 Total: -85.51 kcal Atomic # 8 Polarization: -18.50 SS G_CDS: -0.07 Total: -18.57 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 2.03 Total: 48.00 kcal Total: -81.88 0.68 -81.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169766348.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.967 kcal (2) G-P(sol) polarization free energy of solvation -81.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.201 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds