Wall clock time and date at job start Tue Mar 31 2020 13:22:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86793 * 120.00222 * 2 1 4 4 H 1.48494 * 109.47286 * 239.99756 * 3 2 1 5 5 H 1.48506 * 109.47230 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47247 * 119.99648 * 3 2 1 7 7 C 1.37880 * 119.99649 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99558 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00201 * 0.02562 * 7 2 1 10 10 C 1.50706 * 109.47350 * 179.97438 * 9 7 2 11 11 C 1.38283 * 119.92045 * 89.99817 * 10 9 7 12 12 C 1.38110 * 120.07007 * 180.02562 * 11 10 9 13 13 C 1.38911 * 119.92610 * 359.97438 * 12 11 10 14 14 N 1.39675 * 120.07168 * 179.97438 * 13 12 11 15 15 C 1.46499 * 119.99822 * 180.02562 * 14 13 12 16 16 H 1.09003 * 109.13844 * 35.79042 * 15 14 13 17 17 C 1.49779 * 109.14780 * 276.63611 * 15 14 13 18 18 O 1.21282 * 118.58340 * 38.61169 * 17 15 14 19 19 N 1.33461 * 122.83717 * 218.63450 * 17 15 14 20 20 C 1.45270 * 123.56463 * 359.37186 * 19 17 15 21 21 C 1.50265 * 112.01063 * 21.97262 * 20 19 17 22 22 C 1.38749 * 118.63477 * 158.61168 * 21 20 19 23 23 C 1.38009 * 120.37963 * 179.91263 * 22 21 20 24 24 C 1.38259 * 119.88093 * 0.02562 * 23 22 21 25 25 C 1.38044 * 119.81854 * 0.02562 * 24 23 22 26 26 C 1.37812 * 121.66469 * 338.56975 * 21 20 19 27 27 C 1.38909 * 119.85090 * 0.25797 * 13 12 11 28 28 C 1.38104 * 119.92467 * 359.46673 * 27 13 12 29 29 H 0.97004 * 120.00049 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.46948 * 59.99831 * 9 7 2 31 31 H 1.08995 * 109.47196 * 299.99689 * 9 7 2 32 32 H 1.08003 * 119.96620 * 359.97438 * 11 10 9 33 33 H 1.08002 * 120.03112 * 180.02562 * 12 11 10 34 34 H 0.96999 * 120.00193 * 0.02562 * 14 13 12 35 35 H 0.96994 * 118.21845 * 179.41686 * 19 17 15 36 36 H 1.09006 * 108.97289 * 261.31902 * 20 19 17 37 37 H 1.08999 * 108.90632 * 142.57944 * 20 19 17 38 38 H 1.08007 * 119.80988 * 359.92666 * 22 21 20 39 39 H 1.08000 * 120.06024 * 180.02562 * 23 22 21 40 40 H 1.07994 * 120.09140 * 180.02562 * 24 23 22 41 41 H 1.07996 * 119.82776 * 180.02562 * 25 24 23 42 42 H 1.08001 * 120.04024 * 179.74717 * 27 13 12 43 43 H 1.07996 * 119.96736 * 180.27476 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2302 -3.6447 0.0005 11 6 2.6785 -4.1690 1.1991 12 6 3.5763 -5.2184 1.2027 13 6 4.0286 -5.7476 0.0006 14 7 4.9370 -6.8086 0.0007 15 6 5.4134 -7.3651 -1.2680 16 1 5.5166 -6.5597 -1.9952 17 6 4.4134 -8.3582 -1.7752 18 8 3.2332 -8.1157 -1.6367 19 7 4.7651 -9.4987 -2.3725 20 6 6.1442 -9.8913 -2.6056 21 6 7.0942 -9.1895 -1.6766 22 6 8.3417 -9.7533 -1.4509 23 6 9.2430 -9.1383 -0.6058 24 6 8.9022 -7.9539 0.0206 25 6 7.6610 -7.3920 -0.2019 26 6 6.7551 -8.0091 -1.0514 27 6 3.5800 -5.2154 -1.2015 28 6 2.6778 -4.1697 -1.1980 29 1 -0.4850 0.8401 -0.0004 30 1 0.6247 -2.5570 -0.8897 31 1 0.6240 -2.5567 0.8903 32 1 2.3267 -3.7568 2.1333 33 1 3.9256 -5.6277 2.1391 34 1 5.2524 -7.1770 0.8407 35 1 4.0616 -10.0977 -2.6676 36 1 6.4121 -9.6508 -3.6345 37 1 6.2347 -10.9675 -2.4584 38 1 8.6090 -10.6787 -1.9395 39 1 10.2128 -9.5815 -0.4342 40 1 9.6050 -7.4695 0.6822 41 1 7.3948 -6.4666 0.2870 42 1 3.9328 -5.6218 -2.1379 43 1 2.3252 -3.7583 -2.1322 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169884274.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:22:07 Heat of formation + Delta-G solvation = 23.205933 kcal Electronic energy + Delta-G solvation = -25817.226161 eV Core-core repulsion = 22212.739682 eV Total energy + Delta-G solvation = -3604.486478 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.20807 -39.05616 -38.54833 -35.93779 -35.46665 -33.16205 -31.86932 -31.58072 -30.14075 -29.77600 -28.07697 -26.17578 -25.50502 -23.12707 -22.61223 -22.52914 -21.67346 -19.99131 -19.29168 -17.89265 -17.38326 -17.13270 -16.19737 -16.10428 -16.08219 -15.31910 -15.06414 -14.70931 -14.66549 -14.15246 -13.96248 -13.79945 -13.60368 -13.42683 -13.20379 -12.66738 -12.58822 -12.55625 -12.28779 -11.94682 -11.63034 -11.42222 -11.23813 -11.12447 -10.57939 -10.48829 -10.35899 -10.01103 -9.73434 -9.56736 -9.37693 -9.23087 -9.05581 -8.89125 -8.31008 -8.09353 -6.72894 -5.91204 -3.95480 0.78385 0.90395 2.25943 2.36424 2.50748 2.95732 3.30056 3.38518 3.42131 3.45651 3.60914 4.02077 4.17602 4.27547 4.46847 4.50544 4.70881 4.77103 4.83339 4.95459 5.02602 5.09817 5.19084 5.41192 5.46541 5.55498 5.62072 5.68124 5.93481 5.96087 6.07636 6.14231 6.22273 6.43469 6.47201 6.49639 6.54734 6.81365 6.91555 7.00757 7.40140 7.41036 7.45234 7.68416 7.83906 8.03981 8.04695 8.08057 8.09245 8.48328 9.10165 9.67348 11.17275 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.020331 B = 0.002701 C = 0.002521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.883352 B =10364.730498 C =11105.841344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.507 4.507 8 H 0.056 0.944 9 C 0.053 3.947 10 C -0.079 4.079 11 C -0.084 4.084 12 C -0.186 4.186 13 C 0.184 3.816 14 N -0.733 5.733 15 C 0.190 3.810 16 H 0.119 0.881 17 C 0.497 3.503 18 O -0.514 6.514 19 N -0.724 5.724 20 C 0.153 3.847 21 C -0.091 4.091 22 C -0.112 4.112 23 C -0.112 4.112 24 C -0.116 4.116 25 C -0.097 4.097 26 C -0.089 4.089 27 C -0.170 4.170 28 C -0.083 4.083 29 H 0.261 0.739 30 H 0.025 0.975 31 H 0.025 0.975 32 H 0.116 0.884 33 H 0.107 0.893 34 H 0.398 0.602 35 H 0.402 0.598 36 H 0.080 0.920 37 H 0.089 0.911 38 H 0.127 0.873 39 H 0.126 0.874 40 H 0.127 0.873 41 H 0.133 0.867 42 H 0.103 0.897 43 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.739 -23.701 -3.635 31.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.722 3.278 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.546 4.546 8 H 0.074 0.926 9 C 0.016 3.984 10 C -0.080 4.080 11 C -0.103 4.103 12 C -0.208 4.208 13 C 0.086 3.914 14 N -0.368 5.368 15 C 0.080 3.920 16 H 0.136 0.864 17 C 0.281 3.719 18 O -0.387 6.387 19 N -0.379 5.379 20 C 0.028 3.972 21 C -0.092 4.092 22 C -0.130 4.130 23 C -0.130 4.130 24 C -0.134 4.134 25 C -0.115 4.115 26 C -0.090 4.090 27 C -0.192 4.192 28 C -0.102 4.102 29 H 0.071 0.929 30 H 0.043 0.957 31 H 0.043 0.957 32 H 0.134 0.866 33 H 0.125 0.875 34 H 0.233 0.767 35 H 0.239 0.761 36 H 0.098 0.902 37 H 0.108 0.892 38 H 0.145 0.855 39 H 0.144 0.856 40 H 0.145 0.855 41 H 0.151 0.849 42 H 0.121 0.879 43 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 19.111 -23.281 -3.656 30.341 hybrid contribution 0.490 0.420 0.113 0.655 sum 19.601 -22.861 -3.543 30.321 Atomic orbital electron populations 1.69959 1.06004 1.26689 1.50938 1.25024 0.94855 0.99139 0.95481 0.86630 0.79530 0.83059 0.78630 1.20263 1.21351 1.20253 1.21102 0.93005 0.90119 1.50324 0.92606 1.18244 0.92536 0.89635 0.97977 1.20449 0.98800 0.96965 0.91799 1.20787 0.96318 0.94973 0.98213 1.20395 1.03847 1.01468 0.95110 1.17457 0.91473 0.88294 0.94167 1.44076 1.50716 1.37307 1.04661 1.19071 0.87988 0.94855 0.90117 0.86385 1.20848 0.90895 0.82441 0.77722 1.90853 1.18000 1.75253 1.54587 1.45385 1.08300 1.22179 1.62032 1.19985 0.80175 0.99108 0.97933 1.19542 0.95745 0.94932 0.98952 1.20948 0.92825 1.00211 0.99037 1.21153 0.99490 0.95675 0.96696 1.21214 0.96518 0.95945 0.99742 1.21203 0.93076 1.00059 0.97165 1.19505 0.95301 0.95101 0.99104 1.20402 1.03081 1.00530 0.95194 1.20815 0.96178 0.94986 0.98211 0.92948 0.95696 0.95684 0.86588 0.87474 0.76681 0.76125 0.90231 0.89240 0.85459 0.85592 0.85486 0.84873 0.87919 0.86726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.37 13.29 55.43 0.74 -26.63 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 22.13 29.54 -169.99 -5.02 17.11 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 6 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 7 C -0.51 -14.75 9.09 -34.44 -0.31 -15.06 16 8 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 9 C 0.05 1.44 5.10 -29.03 -0.15 1.29 16 10 C -0.08 -1.84 5.07 -104.58 -0.53 -2.37 16 11 C -0.08 -1.77 9.69 -39.61 -0.38 -2.15 16 12 C -0.19 -3.36 9.90 -39.38 -0.39 -3.75 16 13 C 0.18 3.19 6.15 -83.79 -0.52 2.67 16 14 N -0.73 -9.89 4.36 -55.00 -0.24 -10.13 16 15 C 0.19 2.25 2.53 -70.83 -0.18 2.07 16 16 H 0.12 1.45 6.50 -51.93 -0.34 1.11 16 17 C 0.50 6.45 7.40 -12.01 -0.09 6.36 16 18 O -0.51 -9.05 15.88 5.56 0.09 -8.96 16 19 N -0.72 -6.41 5.45 -63.20 -0.34 -6.76 16 20 C 0.15 0.88 6.98 -6.07 -0.04 0.84 16 21 C -0.09 -0.67 5.81 -104.80 -0.61 -1.28 16 22 C -0.11 -0.65 9.64 -39.48 -0.38 -1.03 16 23 C -0.11 -0.67 10.05 -39.66 -0.40 -1.07 16 24 C -0.12 -0.82 10.05 -39.64 -0.40 -1.21 16 25 C -0.10 -0.84 8.94 -39.49 -0.35 -1.19 16 26 C -0.09 -0.83 5.51 -104.76 -0.58 -1.41 16 27 C -0.17 -3.22 8.24 -39.38 -0.32 -3.54 16 28 C -0.08 -1.79 9.69 -39.61 -0.38 -2.18 16 29 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 30 H 0.02 0.71 8.08 -51.93 -0.42 0.29 16 31 H 0.02 0.71 8.08 -51.93 -0.42 0.29 16 32 H 0.12 2.35 8.06 -52.48 -0.42 1.93 16 33 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 34 H 0.40 4.70 8.14 -40.82 -0.33 4.37 16 35 H 0.40 3.09 8.82 -40.82 -0.36 2.73 16 36 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.09 0.30 8.10 -51.93 -0.42 -0.12 16 38 H 0.13 0.42 8.06 -52.48 -0.42 -0.01 16 39 H 0.13 0.48 8.06 -52.49 -0.42 0.06 16 40 H 0.13 0.68 8.06 -52.49 -0.42 0.25 16 41 H 0.13 1.19 7.54 -52.49 -0.40 0.80 16 42 H 0.10 1.77 6.02 -52.49 -0.32 1.46 16 43 H 0.11 2.42 8.06 -52.49 -0.42 1.99 16 LS Contribution 358.95 15.07 5.41 5.41 Total: -1.00 -35.11 358.95 -10.99 -46.09 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: -5.50 Total: 5.37 kcal Atomic # 6 Polarization: -15.38 SS G_CDS: -6.11 Total: -21.50 kcal Atomic # 7 Polarization: -43.67 SS G_CDS: 0.15 Total: -43.52 kcal Atomic # 8 Polarization: -9.05 SS G_CDS: 0.09 Total: -8.96 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -35.11 -10.99 -46.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169884274.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.300 kcal (2) G-P(sol) polarization free energy of solvation -35.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.094 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds