Wall clock time and date at job start Tue Mar 31 2020 13:22:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86793 * 120.00222 * 2 1 4 4 H 1.48494 * 109.47286 * 239.99756 * 3 2 1 5 5 H 1.48506 * 109.47230 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47247 * 119.99648 * 3 2 1 7 7 C 1.37880 * 119.99649 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99558 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00201 * 0.02562 * 7 2 1 10 10 C 1.50706 * 109.47350 * 179.97438 * 9 7 2 11 11 C 1.38283 * 119.92045 * 89.99817 * 10 9 7 12 12 C 1.38110 * 120.07007 * 180.02562 * 11 10 9 13 13 C 1.38911 * 119.92610 * 359.97438 * 12 11 10 14 14 N 1.39675 * 120.07168 * 179.97438 * 13 12 11 15 15 C 1.46499 * 119.99822 * 180.02562 * 14 13 12 16 16 H 1.09003 * 109.13844 * 35.79042 * 15 14 13 17 17 C 1.49779 * 109.14780 * 276.63611 * 15 14 13 18 18 O 1.21282 * 118.58340 * 38.61169 * 17 15 14 19 19 N 1.33461 * 122.83717 * 218.63450 * 17 15 14 20 20 C 1.45270 * 123.56463 * 359.37186 * 19 17 15 21 21 C 1.50265 * 112.01063 * 21.97262 * 20 19 17 22 22 C 1.38749 * 118.63477 * 158.61168 * 21 20 19 23 23 C 1.38009 * 120.37963 * 179.91263 * 22 21 20 24 24 C 1.38259 * 119.88093 * 0.02562 * 23 22 21 25 25 C 1.38044 * 119.81854 * 0.02562 * 24 23 22 26 26 C 1.37812 * 121.66469 * 338.56975 * 21 20 19 27 27 C 1.38909 * 119.85090 * 0.25797 * 13 12 11 28 28 C 1.38104 * 119.92467 * 359.46673 * 27 13 12 29 29 H 0.97004 * 120.00049 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.46948 * 59.99831 * 9 7 2 31 31 H 1.08995 * 109.47196 * 299.99689 * 9 7 2 32 32 H 1.08003 * 119.96620 * 359.97438 * 11 10 9 33 33 H 1.08002 * 120.03112 * 180.02562 * 12 11 10 34 34 H 0.96999 * 120.00193 * 0.02562 * 14 13 12 35 35 H 0.96994 * 118.21845 * 179.41686 * 19 17 15 36 36 H 1.09006 * 108.97289 * 261.31902 * 20 19 17 37 37 H 1.08999 * 108.90632 * 142.57944 * 20 19 17 38 38 H 1.08007 * 119.80988 * 359.92666 * 22 21 20 39 39 H 1.08000 * 120.06024 * 180.02562 * 23 22 21 40 40 H 1.07994 * 120.09140 * 180.02562 * 24 23 22 41 41 H 1.07996 * 119.82776 * 180.02562 * 25 24 23 42 42 H 1.08001 * 120.04024 * 179.74717 * 27 13 12 43 43 H 1.07996 * 119.96736 * 180.27476 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2302 -3.6447 0.0005 11 6 2.6785 -4.1690 1.1991 12 6 3.5763 -5.2184 1.2027 13 6 4.0286 -5.7476 0.0006 14 7 4.9370 -6.8086 0.0007 15 6 5.4134 -7.3651 -1.2680 16 1 5.5166 -6.5597 -1.9952 17 6 4.4134 -8.3582 -1.7752 18 8 3.2332 -8.1157 -1.6367 19 7 4.7651 -9.4987 -2.3725 20 6 6.1442 -9.8913 -2.6056 21 6 7.0942 -9.1895 -1.6766 22 6 8.3417 -9.7533 -1.4509 23 6 9.2430 -9.1383 -0.6058 24 6 8.9022 -7.9539 0.0206 25 6 7.6610 -7.3920 -0.2019 26 6 6.7551 -8.0091 -1.0514 27 6 3.5800 -5.2154 -1.2015 28 6 2.6778 -4.1697 -1.1980 29 1 -0.4850 0.8401 -0.0004 30 1 0.6247 -2.5570 -0.8897 31 1 0.6240 -2.5567 0.8903 32 1 2.3267 -3.7568 2.1333 33 1 3.9256 -5.6277 2.1391 34 1 5.2524 -7.1770 0.8407 35 1 4.0616 -10.0977 -2.6676 36 1 6.4121 -9.6508 -3.6345 37 1 6.2347 -10.9675 -2.4584 38 1 8.6090 -10.6787 -1.9395 39 1 10.2128 -9.5815 -0.4342 40 1 9.6050 -7.4695 0.6822 41 1 7.3948 -6.4666 0.2870 42 1 3.9328 -5.6218 -2.1379 43 1 2.3252 -3.7583 -2.1322 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169884274.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:22:07 Heat of formation + Delta-G solvation = 0.660640 kcal Electronic energy + Delta-G solvation = -25818.203798 eV Core-core repulsion = 22212.739682 eV Total energy + Delta-G solvation = -3605.464115 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.02925 -40.15532 -39.68587 -37.06748 -36.39651 -35.12850 -33.15921 -32.20207 -31.68677 -31.22753 -29.10304 -27.69685 -26.39837 -24.82663 -23.74855 -23.39193 -22.79584 -21.57686 -20.11827 -18.78751 -18.46704 -18.27118 -18.12396 -17.18803 -16.86980 -16.69342 -16.08497 -15.89260 -15.54444 -15.34027 -15.00467 -14.93894 -14.65815 -14.49219 -14.40841 -14.17241 -13.93192 -13.72152 -13.47991 -13.20792 -13.19617 -12.94773 -12.53055 -12.40955 -12.22559 -11.98356 -11.81385 -11.67011 -11.39173 -11.30734 -10.61479 -10.57531 -10.31427 -9.77454 -9.68517 -9.56311 -8.33758 -8.01717 -6.29902 0.23082 0.39753 0.66574 0.85080 1.39603 1.43615 1.44486 1.51800 2.17307 2.42215 2.51315 2.79583 3.13115 3.14051 3.31426 3.54205 3.62619 3.94060 4.03162 4.16548 4.24502 4.26538 4.45013 4.47462 4.53888 4.62596 4.67845 4.68351 4.75701 4.92297 4.96862 5.07460 5.16317 5.30267 5.38111 5.44007 5.47119 5.52915 5.59181 5.68473 5.79460 5.82845 5.93578 6.01921 6.15777 6.20855 6.23501 6.45623 6.79035 6.82899 7.14875 7.38126 8.92955 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.020331 B = 0.002701 C = 0.002521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.883352 B =10364.730498 C =11105.841344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.000 4.000 3 Si 0.968 3.032 4 H -0.268 1.268 5 H -0.280 1.280 6 H -0.266 1.266 7 C -0.526 4.526 8 H 0.054 0.946 9 C 0.064 3.936 10 C -0.116 4.116 11 C -0.091 4.091 12 C -0.183 4.183 13 C 0.202 3.798 14 N -0.720 5.720 15 C 0.190 3.810 16 H 0.110 0.890 17 C 0.494 3.506 18 O -0.572 6.572 19 N -0.710 5.710 20 C 0.145 3.855 21 C -0.096 4.096 22 C -0.106 4.106 23 C -0.110 4.110 24 C -0.123 4.123 25 C -0.111 4.111 26 C -0.108 4.108 27 C -0.173 4.173 28 C -0.095 4.095 29 H 0.265 0.735 30 H -0.006 1.006 31 H -0.001 1.001 32 H 0.115 0.885 33 H 0.142 0.858 34 H 0.408 0.592 35 H 0.410 0.590 36 H 0.101 0.899 37 H 0.125 0.875 38 H 0.161 0.839 39 H 0.152 0.848 40 H 0.141 0.859 41 H 0.122 0.878 42 H 0.117 0.883 43 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.757 -26.161 -3.826 35.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.198 4.198 3 Si 0.792 3.208 4 H -0.193 1.193 5 H -0.205 1.205 6 H -0.191 1.191 7 C -0.564 4.564 8 H 0.073 0.927 9 C 0.027 3.973 10 C -0.118 4.118 11 C -0.110 4.110 12 C -0.205 4.205 13 C 0.102 3.898 14 N -0.354 5.354 15 C 0.080 3.920 16 H 0.127 0.873 17 C 0.278 3.722 18 O -0.451 6.451 19 N -0.362 5.362 20 C 0.023 3.977 21 C -0.097 4.097 22 C -0.124 4.124 23 C -0.127 4.127 24 C -0.141 4.141 25 C -0.129 4.129 26 C -0.109 4.109 27 C -0.195 4.195 28 C -0.114 4.114 29 H 0.074 0.926 30 H 0.013 0.987 31 H 0.017 0.983 32 H 0.133 0.867 33 H 0.160 0.840 34 H 0.246 0.754 35 H 0.247 0.753 36 H 0.119 0.881 37 H 0.143 0.857 38 H 0.178 0.822 39 H 0.170 0.830 40 H 0.159 0.841 41 H 0.140 0.860 42 H 0.135 0.865 43 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 23.200 -25.819 -3.864 34.925 hybrid contribution -0.609 0.950 0.126 1.135 sum 22.591 -24.869 -3.738 33.806 Atomic orbital electron populations 1.70100 1.07782 1.27920 1.51589 1.26000 0.95809 1.03263 0.94684 0.85456 0.78253 0.77877 0.79201 1.19276 1.20511 1.19080 1.21411 0.93082 0.91334 1.50570 0.92737 1.17976 0.92764 0.91417 0.95135 1.20143 1.00352 0.97559 0.93701 1.20825 0.97062 0.95899 0.97197 1.20635 1.02709 1.00315 0.96848 1.17535 0.90652 0.88271 0.93390 1.44078 1.49123 1.35896 1.06279 1.19110 0.89351 0.94637 0.88851 0.87299 1.20966 0.90075 0.83442 0.77699 1.90834 1.20072 1.76789 1.57364 1.45337 1.10234 1.20689 1.59969 1.20375 0.77771 1.00924 0.98667 1.19768 0.96876 0.94229 0.98821 1.21313 0.91717 1.00998 0.98390 1.21543 1.00578 0.94940 0.95679 1.21444 0.96010 0.96547 1.00072 1.21186 0.93998 1.00072 0.97675 1.19338 0.93967 0.96489 1.01136 1.20482 1.02547 0.99768 0.96671 1.20779 0.97239 0.96089 0.97267 0.92645 0.98735 0.98301 0.86653 0.84011 0.75438 0.75301 0.88129 0.85686 0.82156 0.82982 0.84131 0.85974 0.86475 0.87601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -59.13 13.29 21.45 0.28 -58.84 16 2 C 0.00 0.00 5.46 84.65 0.46 0.46 16 3 Si 0.97 46.18 29.54 68.60 2.03 48.21 16 4 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 5 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 6 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 7 C -0.53 -31.99 9.09 25.60 0.23 -31.76 16 8 H 0.05 3.25 7.74 -2.91 -0.02 3.22 16 9 C 0.06 3.75 5.10 29.10 0.15 3.90 16 10 C -0.12 -5.76 5.07 -19.84 -0.10 -5.86 16 11 C -0.09 -3.96 9.69 22.25 0.22 -3.74 16 12 C -0.18 -6.54 9.90 22.40 0.22 -6.32 16 13 C 0.20 6.98 6.15 38.21 0.24 7.21 16 14 N -0.72 -18.79 4.36 -327.93 -1.43 -20.22 16 15 C 0.19 4.34 2.53 43.12 0.11 4.45 16 16 H 0.11 2.65 6.50 -2.39 -0.02 2.63 16 17 C 0.49 12.39 7.40 87.57 0.65 13.04 16 18 O -0.57 -20.36 15.88 -3.03 -0.05 -20.41 16 19 N -0.71 -10.99 5.45 -472.98 -2.58 -13.57 16 20 C 0.15 1.10 6.98 85.73 0.60 1.70 16 21 C -0.10 -1.09 5.81 -19.98 -0.12 -1.20 16 22 C -0.11 -0.74 9.64 22.34 0.22 -0.52 16 23 C -0.11 -0.85 10.05 22.22 0.22 -0.62 16 24 C -0.12 -1.38 10.05 22.23 0.22 -1.15 16 25 C -0.11 -1.73 8.94 22.33 0.20 -1.53 16 26 C -0.11 -1.81 5.51 -19.96 -0.11 -1.92 16 27 C -0.17 -6.70 8.24 22.40 0.18 -6.51 16 28 C -0.09 -4.33 9.69 22.25 0.22 -4.12 16 29 H 0.26 15.68 8.31 -92.71 -0.77 14.90 16 30 H -0.01 -0.36 8.08 -2.39 -0.02 -0.38 16 31 H 0.00 -0.08 8.08 -2.39 -0.02 -0.10 16 32 H 0.12 4.89 8.06 -2.91 -0.02 4.86 16 33 H 0.14 4.03 8.06 -2.91 -0.02 4.00 16 34 H 0.41 9.03 8.14 -92.71 -0.75 8.28 16 35 H 0.41 5.45 8.82 -92.71 -0.82 4.64 16 36 H 0.10 0.45 8.14 -2.38 -0.02 0.43 16 37 H 0.13 0.16 8.10 -2.39 -0.02 0.14 16 38 H 0.16 0.06 8.06 -2.91 -0.02 0.03 16 39 H 0.15 0.38 8.06 -2.91 -0.02 0.36 16 40 H 0.14 1.11 8.06 -2.91 -0.02 1.09 16 41 H 0.12 2.08 7.54 -2.91 -0.02 2.06 16 42 H 0.12 4.14 6.02 -2.91 -0.02 4.12 16 43 H 0.11 4.84 8.06 -2.91 -0.02 4.82 16 Total: -1.00 -81.01 358.95 1.55 -79.46 By element: Atomic # 1 Polarization: 20.40 SS G_CDS: -0.52 Total: 19.89 kcal Atomic # 6 Polarization: -38.32 SS G_CDS: 3.81 Total: -34.52 kcal Atomic # 7 Polarization: -88.91 SS G_CDS: -3.72 Total: -92.64 kcal Atomic # 8 Polarization: -20.36 SS G_CDS: -0.05 Total: -20.41 kcal Atomic # 14 Polarization: 46.18 SS G_CDS: 2.03 Total: 48.21 kcal Total: -81.01 1.55 -79.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169884274.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.124 kcal (2) G-P(sol) polarization free energy of solvation -81.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.463 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds