Wall clock time and date at job start Tue Mar 31 2020 13:22:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00125 * 2 1 4 4 H 1.48503 * 109.46845 * 269.99927 * 3 2 1 5 5 H 1.48503 * 109.47399 * 29.99417 * 3 2 1 6 6 H 1.48498 * 109.47295 * 150.00023 * 3 2 1 7 7 C 1.37877 * 120.00069 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00146 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99842 * 0.02562 * 7 2 1 10 10 C 1.50703 * 109.46995 * 180.02562 * 9 7 2 11 11 C 1.38285 * 119.92171 * 269.72176 * 10 9 7 12 12 C 1.38102 * 120.07598 * 179.72855 * 11 10 9 13 13 C 1.38910 * 119.92261 * 0.54544 * 12 11 10 14 14 N 1.39676 * 120.07933 * 179.70925 * 13 12 11 15 15 C 1.46504 * 119.99559 * 0.02562 * 14 13 12 16 16 H 1.09000 * 109.14074 * 325.79228 * 15 14 13 17 17 C 1.49778 * 109.14569 * 85.00331 * 15 14 13 18 18 O 1.21284 * 118.58004 * 321.35913 * 17 15 14 19 19 N 1.33439 * 122.84034 * 141.34404 * 17 15 14 20 20 C 1.45276 * 123.56927 * 0.65291 * 19 17 15 21 21 C 1.50268 * 112.00340 * 338.02083 * 20 19 17 22 22 C 1.38749 * 118.63037 * 201.41879 * 21 20 19 23 23 C 1.37976 * 120.39438 * 180.02562 * 22 21 20 24 24 C 1.38258 * 119.87227 * 0.02562 * 23 22 21 25 25 C 1.38043 * 119.82236 * 359.97438 * 24 23 22 26 26 C 1.37800 * 121.67022 * 21.41574 * 21 20 19 27 27 C 1.38916 * 119.85074 * 359.72816 * 13 12 11 28 28 C 1.38105 * 119.92536 * 0.02562 * 27 13 12 29 29 H 0.97000 * 119.99838 * 179.97438 * 1 2 3 30 30 H 1.09008 * 109.47053 * 299.99554 * 9 7 2 31 31 H 1.08991 * 109.47398 * 59.99511 * 9 7 2 32 32 H 1.08006 * 119.96542 * 359.97438 * 11 10 9 33 33 H 1.07998 * 120.03972 * 180.27753 * 12 11 10 34 34 H 0.96995 * 120.00697 * 180.02562 * 14 13 12 35 35 H 0.97006 * 118.21683 * 180.67982 * 19 17 15 36 36 H 1.08993 * 108.97401 * 98.67528 * 20 19 17 37 37 H 1.09005 * 108.97292 * 217.37594 * 20 19 17 38 38 H 1.08001 * 119.80969 * 0.05392 * 22 21 20 39 39 H 1.07998 * 120.07149 * 179.97438 * 23 22 21 40 40 H 1.07998 * 120.09236 * 179.97438 * 24 23 22 41 41 H 1.07994 * 119.83582 * 179.97438 * 25 24 23 42 42 H 1.07995 * 120.03769 * 179.97438 * 27 13 12 43 43 H 1.07994 * 119.96390 * 180.02562 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6528 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2304 -3.6446 0.0018 11 6 2.6751 -4.1732 -1.1961 12 6 3.5768 -5.2192 -1.1987 13 6 4.0284 -5.7477 0.0039 14 7 4.9357 -6.8097 0.0051 15 6 5.4127 -7.3669 -1.2631 16 1 4.6102 -7.3183 -1.9991 17 6 6.5750 -6.5570 -1.7493 18 8 6.5462 -5.3536 -1.6009 19 7 7.6409 -7.1022 -2.3385 20 6 7.7827 -8.5272 -2.5827 21 6 6.9107 -9.3441 -1.6714 22 6 7.2392 -10.6744 -1.4532 23 6 6.4635 -11.4580 -0.6237 24 6 5.3516 -10.9160 -0.0061 25 6 5.0230 -9.5927 -0.2219 26 6 5.8029 -8.8044 -1.0546 27 6 3.5752 -5.2181 1.2055 28 6 2.6774 -4.1687 1.2008 29 1 -0.4850 -0.8401 -0.0004 30 1 0.6241 -2.5567 0.8904 31 1 0.6247 -2.5570 -0.8895 32 1 2.3200 -3.7649 -2.1309 33 1 3.9272 -5.6286 -2.1346 34 1 5.2500 -7.1782 0.8455 35 1 8.3606 -6.5151 -2.6186 36 1 7.5106 -8.7383 -3.6168 37 1 8.8232 -8.8118 -2.4264 38 1 8.1075 -11.0990 -1.9350 39 1 6.7238 -12.4929 -0.4579 40 1 4.7417 -11.5262 0.6435 41 1 4.1544 -9.1693 0.2601 42 1 3.9240 -5.6270 2.1422 43 1 2.3250 -3.7562 2.1346 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169884275.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:22:10 Heat of formation + Delta-G solvation = -4.330352 kcal Electronic energy + Delta-G solvation = -25866.491086 eV Core-core repulsion = 22260.810545 eV Total energy + Delta-G solvation = -3605.680541 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.06084 -40.24096 -39.72258 -37.17969 -36.44170 -35.44143 -33.14260 -32.22112 -31.77348 -31.11772 -29.05327 -27.45801 -26.39854 -24.92300 -23.82344 -23.44071 -22.86046 -21.76987 -20.15090 -19.00953 -18.77435 -18.31634 -18.16169 -17.23328 -16.87944 -16.34204 -16.12318 -15.69315 -15.61422 -15.36666 -15.20864 -15.07179 -14.86403 -14.64450 -14.44704 -14.25518 -13.95594 -13.72977 -13.52865 -13.31256 -13.29419 -12.99754 -12.49304 -12.24768 -12.01002 -11.98025 -11.78915 -11.75944 -11.62625 -11.04489 -10.57566 -10.54935 -10.34233 -9.79848 -9.77073 -9.58219 -8.76283 -8.18478 -6.39799 0.21255 0.38330 0.57520 0.75798 1.41010 1.49153 1.58774 1.78133 2.14094 2.46509 2.54023 2.77908 3.04176 3.13058 3.28731 3.51385 3.60645 3.89566 3.96931 4.10050 4.19210 4.24345 4.34764 4.43212 4.51164 4.58769 4.60725 4.64275 4.66644 4.83606 4.93593 5.00487 5.05993 5.07393 5.20471 5.37811 5.43683 5.45614 5.57458 5.59258 5.79797 5.84558 5.97149 6.00318 6.07206 6.13213 6.16868 6.36253 6.57768 6.73372 7.11991 7.39480 8.69773 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.023886 B = 0.002688 C = 0.002498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.947889 B =10415.451154 C =11204.225951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.037 4.037 3 Si 1.120 2.880 4 H -0.272 1.272 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.602 4.602 8 H 0.038 0.962 9 C 0.049 3.951 10 C -0.115 4.115 11 C -0.095 4.095 12 C -0.173 4.173 13 C 0.205 3.795 14 N -0.719 5.719 15 C 0.190 3.810 16 H 0.112 0.888 17 C 0.492 3.508 18 O -0.575 6.575 19 N -0.710 5.710 20 C 0.145 3.855 21 C -0.096 4.096 22 C -0.106 4.106 23 C -0.109 4.109 24 C -0.122 4.122 25 C -0.110 4.110 26 C -0.109 4.109 27 C -0.182 4.182 28 C -0.091 4.091 29 H 0.256 0.744 30 H -0.002 1.002 31 H -0.005 1.005 32 H 0.105 0.895 33 H 0.120 0.880 34 H 0.409 0.591 35 H 0.409 0.591 36 H 0.101 0.899 37 H 0.125 0.875 38 H 0.160 0.840 39 H 0.153 0.847 40 H 0.142 0.858 41 H 0.123 0.877 42 H 0.144 0.856 43 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.497 -30.673 -3.862 36.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.234 4.234 3 Si 0.940 3.060 4 H -0.197 1.197 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.640 4.640 8 H 0.056 0.944 9 C 0.012 3.988 10 C -0.116 4.116 11 C -0.113 4.113 12 C -0.195 4.195 13 C 0.104 3.896 14 N -0.352 5.352 15 C 0.081 3.919 16 H 0.130 0.870 17 C 0.277 3.723 18 O -0.453 6.453 19 N -0.362 5.362 20 C 0.022 3.978 21 C -0.097 4.097 22 C -0.124 4.124 23 C -0.127 4.127 24 C -0.140 4.140 25 C -0.128 4.128 26 C -0.110 4.110 27 C -0.204 4.204 28 C -0.110 4.110 29 H 0.066 0.934 30 H 0.017 0.983 31 H 0.013 0.987 32 H 0.124 0.876 33 H 0.138 0.862 34 H 0.246 0.754 35 H 0.247 0.753 36 H 0.119 0.881 37 H 0.143 0.857 38 H 0.178 0.822 39 H 0.170 0.830 40 H 0.160 0.840 41 H 0.141 0.859 42 H 0.162 0.838 43 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 19.146 -28.618 -3.897 34.652 hybrid contribution -0.057 -1.068 0.121 1.076 sum 19.089 -29.686 -3.776 35.495 Atomic orbital electron populations 1.70879 1.07673 1.29849 1.48847 1.27438 0.96663 1.06538 0.92727 0.82912 0.74032 0.71117 0.77904 1.19709 1.20015 1.20026 1.22290 0.94020 0.92745 1.54914 0.94367 1.18146 0.93435 0.92563 0.94624 1.19956 1.00608 0.97205 0.93879 1.20762 0.97467 0.95991 0.97125 1.20492 1.01978 1.00261 0.96794 1.17540 0.89918 0.88804 0.93335 1.44081 1.48443 1.36283 1.06391 1.19126 0.94387 0.89491 0.88927 0.87044 1.21005 0.85186 0.88527 0.77608 1.90854 1.80702 1.16811 1.56968 1.45346 1.20347 1.10078 1.60446 1.20381 1.01331 0.77216 0.98854 1.19762 0.94965 0.96064 0.98917 1.21302 1.00962 0.91710 0.98455 1.21540 0.94241 1.01221 0.95694 1.21449 0.97988 0.94580 1.00009 1.21181 0.99340 0.94613 0.97673 1.19333 0.97442 0.92832 1.01372 1.20639 1.02621 1.00150 0.96983 1.20804 0.97291 0.95835 0.97052 0.93445 0.98347 0.98717 0.87647 0.86240 0.75388 0.75337 0.88094 0.85703 0.82204 0.82958 0.84038 0.85865 0.83843 0.86776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.84 13.65 21.45 0.29 -60.55 16 2 C -0.04 -2.26 5.46 84.65 0.46 -1.80 16 3 Si 1.12 54.27 29.90 68.60 2.05 56.33 16 4 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 5 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 6 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 7 C -0.60 -37.80 9.09 25.60 0.23 -37.56 16 8 H 0.04 2.44 7.74 -2.91 -0.02 2.42 16 9 C 0.05 2.86 4.41 29.10 0.13 2.99 16 10 C -0.11 -5.72 5.07 -19.84 -0.10 -5.82 16 11 C -0.09 -4.32 9.69 22.25 0.22 -4.11 16 12 C -0.17 -6.70 8.35 22.40 0.19 -6.51 16 13 C 0.20 7.04 6.18 38.21 0.24 7.28 16 14 N -0.72 -18.61 4.30 -327.92 -1.41 -20.02 16 15 C 0.19 4.30 2.52 43.12 0.11 4.41 16 16 H 0.11 2.64 6.42 -2.39 -0.02 2.63 16 17 C 0.49 12.64 7.44 87.58 0.65 13.29 16 18 O -0.57 -21.25 16.11 -3.04 -0.05 -21.30 16 19 N -0.71 -11.37 5.45 -473.00 -2.58 -13.95 16 20 C 0.14 1.12 6.99 85.73 0.60 1.72 16 21 C -0.10 -1.07 5.81 -19.98 -0.12 -1.19 16 22 C -0.11 -0.71 9.63 22.33 0.22 -0.50 16 23 C -0.11 -0.79 10.04 22.21 0.22 -0.57 16 24 C -0.12 -1.28 10.05 22.23 0.22 -1.06 16 25 C -0.11 -1.63 8.97 22.33 0.20 -1.43 16 26 C -0.11 -1.77 5.51 -19.96 -0.11 -1.88 16 27 C -0.18 -6.50 9.90 22.40 0.22 -6.28 16 28 C -0.09 -3.97 9.69 22.25 0.22 -3.76 16 29 H 0.26 16.85 7.22 -92.71 -0.67 16.18 16 30 H 0.00 -0.10 7.95 -2.38 -0.02 -0.12 16 31 H -0.01 -0.33 7.95 -2.39 -0.02 -0.35 16 32 H 0.11 4.82 8.06 -2.91 -0.02 4.79 16 33 H 0.12 4.18 6.10 -2.91 -0.02 4.16 16 34 H 0.41 8.97 8.21 -92.71 -0.76 8.20 16 35 H 0.41 5.77 8.82 -92.70 -0.82 4.95 16 36 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 37 H 0.13 0.19 8.10 -2.38 -0.02 0.17 16 38 H 0.16 0.03 8.06 -2.91 -0.02 0.01 16 39 H 0.15 0.31 8.06 -2.91 -0.02 0.29 16 40 H 0.14 0.99 8.06 -2.91 -0.02 0.97 16 41 H 0.12 1.96 7.55 -2.91 -0.02 1.94 16 42 H 0.14 4.06 8.06 -2.91 -0.02 4.04 16 43 H 0.11 4.87 8.06 -2.91 -0.02 4.85 16 Total: -1.00 -84.11 358.10 1.68 -82.43 By element: Atomic # 1 Polarization: 20.24 SS G_CDS: -0.42 Total: 19.82 kcal Atomic # 6 Polarization: -46.55 SS G_CDS: 3.79 Total: -42.75 kcal Atomic # 7 Polarization: -90.83 SS G_CDS: -3.70 Total: -94.52 kcal Atomic # 8 Polarization: -21.25 SS G_CDS: -0.05 Total: -21.30 kcal Atomic # 14 Polarization: 54.27 SS G_CDS: 2.05 Total: 56.33 kcal Total: -84.11 1.68 -82.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169884275.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.100 kcal (2) G-P(sol) polarization free energy of solvation -84.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds