Wall clock time and date at job start Tue Mar 31 2020 13:38:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13606 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 C 1.39759 * 120.09388 * 284.05614 * 3 2 1 5 5 C 1.37727 * 119.90625 * 180.02562 * 4 3 2 6 6 C 1.38968 * 120.09296 * 359.97438 * 5 4 3 7 7 O 1.35758 * 119.90376 * 180.02562 * 6 5 4 8 8 C 1.42905 * 116.99785 * 179.97438 * 7 6 5 9 9 C 1.52999 * 109.46728 * 180.02562 * 8 7 6 10 10 N 1.46500 * 109.47177 * 65.00458 * 9 8 7 11 11 C 1.39672 * 120.00199 * 179.97438 * 10 9 8 12 12 C 1.38912 * 120.07339 * 359.72657 * 11 10 9 13 13 C 1.38113 * 119.92516 * 179.76875 * 12 11 10 14 14 C 1.38284 * 120.07275 * 0.50168 * 13 12 11 15 15 C 1.50696 * 119.92384 * 179.72406 * 14 13 12 16 16 C 1.50700 * 109.47105 * 270.02591 * 15 14 13 17 17 H 1.07998 * 120.00323 * 359.97438 * 16 15 14 18 18 C 1.37880 * 119.99564 * 180.02562 * 16 15 14 19 19 N 1.31510 * 120.00478 * 359.97438 * 18 16 15 20 20 Si 1.86808 * 119.99661 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.46997 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47006 * 119.99718 * 20 18 16 23 23 H 1.48497 * 109.47145 * 239.99966 * 20 18 16 24 24 C 1.38288 * 120.15162 * 359.75001 * 14 13 12 25 25 C 1.38110 * 120.07169 * 359.97438 * 24 14 13 26 26 C 1.38959 * 120.19188 * 0.27627 * 6 5 4 27 27 C 1.37739 * 120.09316 * 359.45271 * 26 6 5 28 28 H 1.08003 * 120.04887 * 0.02562 * 4 3 2 29 29 H 1.08003 * 119.95808 * 179.97438 * 5 4 3 30 30 H 1.09000 * 109.47187 * 300.00259 * 8 7 6 31 31 H 1.09001 * 109.46558 * 60.00306 * 8 7 6 32 32 H 1.09000 * 109.46738 * 185.00163 * 9 8 7 33 33 H 1.08994 * 109.47465 * 305.00250 * 9 8 7 34 34 H 0.97003 * 120.00376 * 359.97438 * 10 9 8 35 35 H 1.08007 * 120.03977 * 359.97438 * 12 11 10 36 36 H 1.07995 * 119.96180 * 180.24976 * 13 12 11 37 37 H 1.09000 * 109.47179 * 30.02835 * 15 14 13 38 38 H 1.09000 * 109.46896 * 150.02700 * 15 14 13 39 39 H 0.96998 * 120.00054 * 179.97438 * 19 18 16 40 40 H 1.07996 * 119.96542 * 180.02562 * 24 14 13 41 41 H 1.07996 * 120.03565 * 179.97438 * 25 24 14 42 42 H 1.08002 * 119.95677 * 179.69885 * 26 6 5 43 43 H 1.07996 * 120.05365 * 180.24657 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2689 -0.2927 1.1730 5 6 4.6462 -0.2905 1.1687 6 6 5.3389 0.0024 0.0002 7 8 6.6965 0.0030 0.0002 8 6 7.3451 0.3120 -1.2351 9 6 8.8619 0.2634 -1.0407 10 7 9.2697 -1.1069 -0.7211 11 6 10.6170 -1.4010 -0.4995 12 6 11.5723 -0.3964 -0.5874 13 6 12.9032 -0.6897 -0.3630 14 6 13.2863 -1.9837 -0.0614 15 6 14.7401 -2.3011 0.1767 16 6 15.3919 -2.6795 -1.1283 17 1 14.8114 -2.6896 -2.0389 18 6 16.7292 -3.0139 -1.1594 19 7 17.4360 -3.0021 -0.0505 20 14 17.5370 -3.4837 -2.7770 21 1 16.5324 -3.4200 -3.8688 22 1 18.6462 -2.5405 -3.0686 23 1 18.0742 -4.8647 -2.6793 24 6 12.3385 -2.9872 0.0218 25 6 11.0053 -2.6997 -0.1958 26 6 4.6460 0.2997 -1.1671 27 6 3.2687 0.2943 -1.1731 28 1 2.7314 -0.5209 2.0815 29 1 5.1887 -0.5167 2.0748 30 1 7.0525 -0.4165 -1.9913 31 1 7.0518 1.3104 -1.5596 32 1 9.3562 0.5851 -1.9574 33 1 9.1449 0.9266 -0.2234 34 1 8.6040 -1.8101 -0.6633 35 1 11.2744 0.6136 -0.8277 36 1 13.6459 0.0917 -0.4272 37 1 15.2398 -1.4260 0.5921 38 1 14.8205 -3.1321 0.8774 39 1 18.3767 -3.2377 -0.0724 40 1 12.6410 -3.9967 0.2580 41 1 10.2656 -3.4839 -0.1311 42 1 5.1882 0.5316 -2.0719 43 1 2.7308 0.5216 -2.0816 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001171485549.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:38:50 Heat of formation + Delta-G solvation = 36.678557 kcal Electronic energy + Delta-G solvation = -23924.378409 eV Core-core repulsion = 20320.476147 eV Total energy + Delta-G solvation = -3603.902261 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.83684 -39.02315 -38.44627 -36.63873 -35.64924 -33.12821 -31.95432 -31.45691 -30.58835 -30.17535 -28.91432 -26.04962 -24.46272 -23.88518 -22.81676 -22.70936 -21.30498 -20.01962 -19.46003 -18.78038 -17.27164 -16.72783 -16.29242 -16.20605 -15.46821 -15.26972 -14.84094 -14.76158 -14.39586 -14.21842 -14.14832 -14.04603 -13.89268 -13.50988 -13.21259 -12.97204 -12.79713 -12.65365 -12.63079 -12.47395 -12.02150 -11.89184 -11.47298 -11.38191 -11.21080 -11.18278 -10.66945 -10.50885 -10.10921 -9.79469 -9.73737 -9.41978 -9.02699 -8.81664 -8.37949 -8.23888 -6.79313 -5.97752 -4.02191 0.28966 0.68770 2.11958 2.23432 2.35331 2.44862 2.54208 3.31402 3.33121 3.39021 3.44067 3.44291 3.52144 4.09394 4.18416 4.40421 4.43809 4.51093 4.57169 4.67297 4.72767 4.82617 4.91990 5.27008 5.32592 5.35038 5.40225 5.47241 5.53283 5.55877 5.64127 5.72722 5.98394 6.04049 6.11889 6.32245 6.41291 6.71021 6.75728 6.84162 7.05673 7.29864 7.30955 7.39989 7.61479 7.81590 7.97814 7.98220 8.01829 8.41120 9.04029 9.61391 11.10694 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.039713 B = 0.001622 C = 0.001607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.896050 B =17263.308750 C =17419.614492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.425 5.425 2 C 0.259 3.741 3 C -0.076 4.076 4 C -0.028 4.028 5 C -0.153 4.153 6 C 0.166 3.834 7 O -0.301 6.301 8 C 0.045 3.955 9 C 0.134 3.866 10 N -0.756 5.756 11 C 0.180 3.820 12 C -0.195 4.195 13 C -0.081 4.081 14 C -0.083 4.083 15 C 0.052 3.948 16 C -0.508 4.508 17 H 0.057 0.943 18 C 0.057 3.943 19 N -0.896 5.896 20 Si 0.892 3.108 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.284 1.284 24 C -0.080 4.080 25 C -0.191 4.191 26 C -0.214 4.214 27 C -0.026 4.026 28 H 0.140 0.860 29 H 0.144 0.856 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.068 0.932 34 H 0.396 0.604 35 H 0.108 0.892 36 H 0.116 0.884 37 H 0.025 0.975 38 H 0.025 0.975 39 H 0.260 0.740 40 H 0.116 0.884 41 H 0.108 0.892 42 H 0.139 0.861 43 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.509 8.284 -0.854 27.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.101 5.101 2 C -0.056 4.056 3 C -0.080 4.080 4 C -0.049 4.049 5 C -0.172 4.172 6 C 0.118 3.882 7 O -0.214 6.214 8 C -0.030 4.030 9 C 0.009 3.991 10 N -0.390 5.390 11 C 0.081 3.919 12 C -0.217 4.217 13 C -0.099 4.099 14 C -0.085 4.085 15 C 0.015 3.985 16 C -0.547 4.547 17 H 0.075 0.925 18 C -0.144 4.144 19 N -0.535 5.535 20 Si 0.720 3.280 21 H -0.197 1.197 22 H -0.210 1.210 23 H -0.210 1.210 24 C -0.098 4.098 25 C -0.213 4.213 26 C -0.233 4.233 27 C -0.047 4.047 28 H 0.158 0.842 29 H 0.161 0.839 30 H 0.092 0.908 31 H 0.099 0.901 32 H 0.097 0.903 33 H 0.086 0.914 34 H 0.230 0.770 35 H 0.126 0.874 36 H 0.134 0.866 37 H 0.043 0.957 38 H 0.043 0.957 39 H 0.070 0.930 40 H 0.134 0.866 41 H 0.126 0.874 42 H 0.157 0.843 43 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -27.940 8.424 -0.682 29.190 hybrid contribution 0.687 -0.466 -1.153 1.421 sum -27.253 7.958 -1.835 28.450 Atomic orbital electron populations 1.81283 1.12096 1.09440 1.07272 1.25662 0.92573 0.93486 0.93874 1.15912 0.84422 1.11761 0.95917 1.20993 0.93101 0.94003 0.96786 1.20419 0.93144 1.05995 0.97611 1.19344 0.82865 0.92034 0.93931 1.86178 1.15764 1.83905 1.35505 1.23249 0.93081 1.01616 0.85017 1.21240 0.90165 0.86192 1.01548 1.44270 1.05105 1.08343 1.81299 1.17568 0.83384 0.93617 0.97339 1.20498 0.93116 0.97519 1.10611 1.20846 0.94367 0.96851 0.97883 1.20474 0.98089 0.92258 0.97659 1.18257 0.85658 0.97361 0.97196 1.21176 0.94283 1.45395 0.93799 0.92500 1.25017 0.97385 0.95700 0.96317 1.69967 1.08005 1.49063 1.26465 0.86526 0.79364 0.78084 0.84007 1.19725 1.21021 1.21024 1.20840 0.91555 0.99114 0.98331 1.20461 0.96561 0.94355 1.09945 1.21228 0.94780 1.08848 0.98418 1.20956 0.93393 0.93687 0.96657 0.84244 0.83850 0.90839 0.90129 0.90305 0.91382 0.77024 0.87389 0.86622 0.95668 0.95668 0.93014 0.86565 0.87409 0.84283 0.84702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -4.44 18.54 41.84 0.78 -3.66 16 2 C 0.26 2.03 15.33 -22.47 -0.34 1.68 16 3 C -0.08 -0.44 5.74 -106.84 -0.61 -1.05 16 4 C -0.03 -0.14 9.75 -39.20 -0.38 -0.52 16 5 C -0.15 -0.85 9.97 -39.50 -0.39 -1.24 16 6 C 0.17 1.02 6.69 -39.04 -0.26 0.76 16 7 O -0.30 -2.18 10.07 -18.98 -0.19 -2.37 16 8 C 0.05 0.25 4.87 37.16 0.18 0.43 16 9 C 0.13 1.07 5.30 -4.04 -0.02 1.05 16 10 N -0.76 -8.35 5.68 -58.64 -0.33 -8.68 16 11 C 0.18 2.73 6.65 -83.79 -0.56 2.17 16 12 C -0.20 -3.15 9.31 -39.38 -0.37 -3.52 16 13 C -0.08 -1.56 9.69 -39.61 -0.38 -1.95 16 14 C -0.08 -1.81 5.07 -104.59 -0.53 -2.34 16 15 C 0.05 1.35 5.10 -29.04 -0.15 1.20 16 16 C -0.51 -14.29 9.09 -34.44 -0.31 -14.61 16 17 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 18 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 19 N -0.90 -26.55 13.29 55.43 0.74 -25.81 16 20 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 16 21 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 22 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 23 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 24 C -0.08 -1.55 9.69 -39.61 -0.38 -1.94 16 25 C -0.19 -3.13 9.90 -39.38 -0.39 -3.52 16 26 C -0.21 -1.01 9.01 -39.50 -0.36 -1.37 16 27 C -0.03 -0.12 9.75 -39.20 -0.38 -0.51 16 28 H 0.14 0.44 8.06 -52.48 -0.42 0.02 16 29 H 0.14 0.69 8.06 -52.48 -0.42 0.27 16 30 H 0.07 0.33 7.66 -51.93 -0.40 -0.07 16 31 H 0.08 0.27 7.64 -51.93 -0.40 -0.13 16 32 H 0.08 0.59 7.94 -51.93 -0.41 0.18 16 33 H 0.07 0.59 7.96 -51.93 -0.41 0.18 16 34 H 0.40 3.90 8.49 -40.82 -0.35 3.55 16 35 H 0.11 1.45 6.74 -52.48 -0.35 1.10 16 36 H 0.12 2.18 8.06 -52.49 -0.42 1.75 16 37 H 0.03 0.68 8.08 -51.93 -0.42 0.26 16 38 H 0.03 0.68 8.08 -51.93 -0.42 0.26 16 39 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 40 H 0.12 2.21 8.06 -52.49 -0.42 1.78 16 41 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 42 H 0.14 0.41 6.28 -52.49 -0.33 0.08 16 43 H 0.14 0.41 8.06 -52.49 -0.42 -0.02 16 LS Contribution 378.06 15.07 5.70 5.70 Total: -1.00 -32.85 378.06 -9.65 -42.49 By element: Atomic # 1 Polarization: 5.15 SS G_CDS: -5.57 Total: -0.42 kcal Atomic # 6 Polarization: -18.01 SS G_CDS: -5.74 Total: -23.75 kcal Atomic # 7 Polarization: -39.33 SS G_CDS: 1.18 Total: -38.15 kcal Atomic # 8 Polarization: -2.18 SS G_CDS: -0.19 Total: -2.37 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.85 -9.65 -42.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171485549.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.173 kcal (2) G-P(sol) polarization free energy of solvation -32.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.494 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds