Wall clock time and date at job start Tue Mar 31 2020 13:38:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13606 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 C 1.39759 * 120.09388 * 284.05614 * 3 2 1 5 5 C 1.37727 * 119.90625 * 180.02562 * 4 3 2 6 6 C 1.38968 * 120.09296 * 359.97438 * 5 4 3 7 7 O 1.35758 * 119.90376 * 180.02562 * 6 5 4 8 8 C 1.42905 * 116.99785 * 179.97438 * 7 6 5 9 9 C 1.52999 * 109.46728 * 180.02562 * 8 7 6 10 10 N 1.46500 * 109.47177 * 65.00458 * 9 8 7 11 11 C 1.39672 * 120.00199 * 179.97438 * 10 9 8 12 12 C 1.38912 * 120.07339 * 359.72657 * 11 10 9 13 13 C 1.38113 * 119.92516 * 179.76875 * 12 11 10 14 14 C 1.38284 * 120.07275 * 0.50168 * 13 12 11 15 15 C 1.50696 * 119.92384 * 179.72406 * 14 13 12 16 16 C 1.50700 * 109.47105 * 270.02591 * 15 14 13 17 17 H 1.07998 * 120.00323 * 359.97438 * 16 15 14 18 18 C 1.37880 * 119.99564 * 180.02562 * 16 15 14 19 19 N 1.31510 * 120.00478 * 359.97438 * 18 16 15 20 20 Si 1.86808 * 119.99661 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.46997 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47006 * 119.99718 * 20 18 16 23 23 H 1.48497 * 109.47145 * 239.99966 * 20 18 16 24 24 C 1.38288 * 120.15162 * 359.75001 * 14 13 12 25 25 C 1.38110 * 120.07169 * 359.97438 * 24 14 13 26 26 C 1.38959 * 120.19188 * 0.27627 * 6 5 4 27 27 C 1.37739 * 120.09316 * 359.45271 * 26 6 5 28 28 H 1.08003 * 120.04887 * 0.02562 * 4 3 2 29 29 H 1.08003 * 119.95808 * 179.97438 * 5 4 3 30 30 H 1.09000 * 109.47187 * 300.00259 * 8 7 6 31 31 H 1.09001 * 109.46558 * 60.00306 * 8 7 6 32 32 H 1.09000 * 109.46738 * 185.00163 * 9 8 7 33 33 H 1.08994 * 109.47465 * 305.00250 * 9 8 7 34 34 H 0.97003 * 120.00376 * 359.97438 * 10 9 8 35 35 H 1.08007 * 120.03977 * 359.97438 * 12 11 10 36 36 H 1.07995 * 119.96180 * 180.24976 * 13 12 11 37 37 H 1.09000 * 109.47179 * 30.02835 * 15 14 13 38 38 H 1.09000 * 109.46896 * 150.02700 * 15 14 13 39 39 H 0.96998 * 120.00054 * 179.97438 * 19 18 16 40 40 H 1.07996 * 119.96542 * 180.02562 * 24 14 13 41 41 H 1.07996 * 120.03565 * 179.97438 * 25 24 14 42 42 H 1.08002 * 119.95677 * 179.69885 * 26 6 5 43 43 H 1.07996 * 120.05365 * 180.24657 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2689 -0.2927 1.1730 5 6 4.6462 -0.2905 1.1687 6 6 5.3389 0.0024 0.0002 7 8 6.6965 0.0030 0.0002 8 6 7.3451 0.3120 -1.2351 9 6 8.8619 0.2634 -1.0407 10 7 9.2697 -1.1069 -0.7211 11 6 10.6170 -1.4010 -0.4995 12 6 11.5723 -0.3964 -0.5874 13 6 12.9032 -0.6897 -0.3630 14 6 13.2863 -1.9837 -0.0614 15 6 14.7401 -2.3011 0.1767 16 6 15.3919 -2.6795 -1.1283 17 1 14.8114 -2.6896 -2.0389 18 6 16.7292 -3.0139 -1.1594 19 7 17.4360 -3.0021 -0.0505 20 14 17.5370 -3.4837 -2.7770 21 1 16.5324 -3.4200 -3.8688 22 1 18.6462 -2.5405 -3.0686 23 1 18.0742 -4.8647 -2.6793 24 6 12.3385 -2.9872 0.0218 25 6 11.0053 -2.6997 -0.1958 26 6 4.6460 0.2997 -1.1671 27 6 3.2687 0.2943 -1.1731 28 1 2.7314 -0.5209 2.0815 29 1 5.1887 -0.5167 2.0748 30 1 7.0525 -0.4165 -1.9913 31 1 7.0518 1.3104 -1.5596 32 1 9.3562 0.5851 -1.9574 33 1 9.1449 0.9266 -0.2234 34 1 8.6040 -1.8101 -0.6633 35 1 11.2744 0.6136 -0.8277 36 1 13.6459 0.0917 -0.4272 37 1 15.2398 -1.4260 0.5921 38 1 14.8205 -3.1321 0.8774 39 1 18.3767 -3.2377 -0.0724 40 1 12.6410 -3.9967 0.2580 41 1 10.2656 -3.4839 -0.1311 42 1 5.1882 0.5316 -2.0719 43 1 2.7308 0.5216 -2.0816 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001171485549.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:38:49 Heat of formation + Delta-G solvation = 18.737932 kcal Electronic energy + Delta-G solvation = -23925.156372 eV Core-core repulsion = 20320.476147 eV Total energy + Delta-G solvation = -3604.680225 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.25146 -40.23094 -39.03043 -37.32930 -36.71840 -35.03036 -32.80427 -32.13109 -31.59951 -31.34403 -30.02470 -27.62519 -25.24376 -24.55622 -24.29218 -23.54286 -22.30534 -21.43619 -19.88735 -19.20886 -18.47450 -18.23614 -17.32397 -16.87221 -16.72095 -16.23470 -15.71947 -15.62868 -15.37780 -15.05007 -14.88950 -14.73590 -14.60733 -14.48974 -14.37807 -14.30576 -14.04596 -13.66021 -13.46014 -13.19727 -13.15747 -13.09074 -12.92924 -12.55264 -12.53395 -12.36807 -11.87800 -11.77083 -11.57732 -11.53100 -11.31801 -10.56877 -10.53206 -10.07900 -9.63644 -9.24028 -8.27546 -7.91282 -6.28313 -0.14080 0.35029 0.71945 0.93330 1.41275 1.41558 1.55348 1.64184 1.93831 2.12783 2.43197 2.63388 2.89476 2.93537 3.14737 3.20680 3.71879 3.85247 3.99697 4.13433 4.15825 4.22059 4.28621 4.40237 4.47149 4.54983 4.56506 4.74841 4.79493 4.82166 4.85401 5.01439 5.07385 5.09399 5.23703 5.26746 5.36299 5.40515 5.43792 5.59581 5.62728 5.73691 5.84330 6.06530 6.27064 6.27906 6.36659 6.48900 6.62785 6.85646 6.99509 7.40229 8.94038 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.039713 B = 0.001622 C = 0.001607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.896050 B =17263.308750 C =17419.614492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.478 5.478 2 C 0.284 3.716 3 C -0.089 4.089 4 C -0.024 4.024 5 C -0.163 4.163 6 C 0.158 3.842 7 O -0.320 6.320 8 C 0.047 3.953 9 C 0.125 3.875 10 N -0.743 5.743 11 C 0.199 3.801 12 C -0.193 4.193 13 C -0.090 4.090 14 C -0.126 4.126 15 C 0.062 3.938 16 C -0.525 4.525 17 H 0.053 0.947 18 C 0.002 3.998 19 N -0.933 5.933 20 Si 0.965 3.035 21 H -0.265 1.265 22 H -0.276 1.276 23 H -0.277 1.277 24 C -0.091 4.091 25 C -0.192 4.192 26 C -0.211 4.211 27 C -0.022 4.022 28 H 0.153 0.847 29 H 0.147 0.853 30 H 0.089 0.911 31 H 0.107 0.893 32 H 0.093 0.907 33 H 0.065 0.935 34 H 0.405 0.595 35 H 0.140 0.860 36 H 0.109 0.891 37 H -0.003 1.003 38 H -0.004 1.004 39 H 0.264 0.736 40 H 0.108 0.892 41 H 0.136 0.864 42 H 0.162 0.838 43 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.477 9.056 -2.922 30.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.155 5.155 2 C -0.030 4.030 3 C -0.093 4.093 4 C -0.044 4.044 5 C -0.182 4.182 6 C 0.110 3.890 7 O -0.233 6.233 8 C -0.027 4.027 9 C 0.001 3.999 10 N -0.376 5.376 11 C 0.097 3.903 12 C -0.215 4.215 13 C -0.109 4.109 14 C -0.128 4.128 15 C 0.025 3.975 16 C -0.563 4.563 17 H 0.072 0.928 18 C -0.196 4.196 19 N -0.573 5.573 20 Si 0.789 3.211 21 H -0.189 1.189 22 H -0.202 1.202 23 H -0.203 1.203 24 C -0.110 4.110 25 C -0.214 4.214 26 C -0.229 4.229 27 C -0.043 4.043 28 H 0.170 0.830 29 H 0.165 0.835 30 H 0.107 0.893 31 H 0.125 0.875 32 H 0.111 0.889 33 H 0.083 0.917 34 H 0.240 0.760 35 H 0.158 0.842 36 H 0.127 0.873 37 H 0.015 0.985 38 H 0.014 0.986 39 H 0.073 0.927 40 H 0.126 0.874 41 H 0.154 0.846 42 H 0.179 0.821 43 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -29.962 9.210 -2.755 31.467 hybrid contribution 1.190 -0.646 -0.469 1.433 sum -28.772 8.564 -3.224 30.192 Atomic orbital electron populations 1.81304 1.13619 1.11559 1.08992 1.25942 0.92790 0.91939 0.92330 1.16019 0.83247 1.13145 0.96905 1.21124 0.93007 0.93221 0.97090 1.20540 0.93332 1.06374 0.97941 1.19508 0.82607 0.92298 0.94555 1.86140 1.16337 1.84238 1.36541 1.23316 0.90998 1.03689 0.84730 1.21501 0.92395 0.84050 1.01971 1.44410 1.03403 1.10234 1.79525 1.17647 0.85189 0.92763 0.94714 1.20698 0.91691 0.99349 1.09762 1.20845 0.96049 0.95616 0.98381 1.20143 0.95968 0.94361 1.02296 1.17987 0.88925 0.94862 0.95683 1.21501 0.94876 1.45465 0.94467 0.92823 1.25948 0.98002 0.95456 1.00160 1.70096 1.08454 1.49915 1.28862 0.85399 0.78330 0.77961 0.79366 1.18874 1.20167 1.20268 1.20819 0.92826 0.98260 0.99048 1.20659 0.95577 0.95922 1.09249 1.21429 0.94674 1.08103 0.98727 1.21175 0.93602 0.92670 0.96820 0.82962 0.83549 0.89334 0.87463 0.88938 0.91725 0.75974 0.84203 0.87275 0.98460 0.98575 0.92707 0.87420 0.84585 0.82082 0.83003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -9.85 18.54 19.00 0.35 -9.50 16 2 C 0.28 4.16 15.33 88.33 1.35 5.51 16 3 C -0.09 -0.85 5.74 -21.30 -0.12 -0.97 16 4 C -0.02 -0.19 9.75 22.52 0.22 0.03 16 5 C -0.16 -1.46 9.97 22.32 0.22 -1.24 16 6 C 0.16 1.46 6.69 22.62 0.15 1.61 16 7 O -0.32 -3.50 10.07 -90.84 -0.91 -4.41 16 8 C 0.05 0.30 4.87 71.98 0.35 0.65 16 9 C 0.12 1.47 5.30 86.38 0.46 1.93 16 10 N -0.74 -13.50 5.68 -339.43 -1.93 -15.42 16 11 C 0.20 5.49 6.65 38.21 0.25 5.74 16 12 C -0.19 -5.83 9.31 22.40 0.21 -5.63 16 13 C -0.09 -3.53 9.69 22.25 0.22 -3.31 16 14 C -0.13 -5.71 5.07 -19.84 -0.10 -5.81 16 15 C 0.06 3.45 5.10 29.10 0.15 3.60 16 16 C -0.53 -30.70 9.09 25.60 0.23 -30.47 16 17 H 0.05 3.09 7.74 -2.91 -0.02 3.07 16 18 C 0.00 0.11 5.46 84.66 0.46 0.57 16 19 N -0.93 -57.19 13.29 21.45 0.28 -56.90 16 20 Si 0.96 44.75 29.54 68.60 2.03 46.77 16 21 H -0.26 -11.82 7.11 99.48 0.71 -11.11 16 22 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 23 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 24 C -0.09 -3.60 9.69 22.25 0.22 -3.39 16 25 C -0.19 -5.96 9.90 22.40 0.22 -5.74 16 26 C -0.21 -1.22 9.01 22.32 0.20 -1.02 16 27 C -0.02 -0.14 9.75 22.52 0.22 0.08 16 28 H 0.15 0.72 8.06 -2.91 -0.02 0.69 16 29 H 0.15 1.16 8.06 -2.91 -0.02 1.13 16 30 H 0.09 0.33 7.66 -2.39 -0.02 0.31 16 31 H 0.11 0.16 7.64 -2.39 -0.02 0.14 16 32 H 0.09 0.93 7.94 -2.39 -0.02 0.91 16 33 H 0.06 0.87 7.96 -2.39 -0.02 0.85 16 34 H 0.40 6.27 8.49 -92.71 -0.79 5.48 16 35 H 0.14 3.28 6.74 -2.91 -0.02 3.26 16 36 H 0.11 4.26 8.06 -2.91 -0.02 4.24 16 37 H 0.00 -0.17 8.08 -2.39 -0.02 -0.19 16 38 H 0.00 -0.24 8.08 -2.39 -0.02 -0.26 16 39 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 40 H 0.11 4.30 8.06 -2.91 -0.02 4.27 16 41 H 0.14 3.40 8.06 -2.91 -0.02 3.37 16 42 H 0.16 0.17 6.28 -2.91 -0.02 0.15 16 43 H 0.15 0.43 8.06 -2.91 -0.02 0.40 16 Total: -1.00 -74.67 378.06 4.98 -69.68 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: 0.25 Total: 7.63 kcal Atomic # 6 Polarization: -42.76 SS G_CDS: 4.91 Total: -37.85 kcal Atomic # 7 Polarization: -80.54 SS G_CDS: -1.29 Total: -81.83 kcal Atomic # 8 Polarization: -3.50 SS G_CDS: -0.91 Total: -4.41 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.77 kcal Total: -74.67 4.98 -69.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171485549.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.422 kcal (2) G-P(sol) polarization free energy of solvation -74.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.684 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds