Wall clock time and date at job start Tue Mar 31 2020 12:59:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34194 * 119.46025 * 2 1 4 4 O 1.21809 * 118.55218 * 0.02562 * 3 2 1 5 5 N 1.33328 * 122.89411 * 179.97438 * 3 2 1 6 6 C 1.32042 * 121.50636 * 0.02562 * 5 3 2 7 7 O 1.34915 * 120.65308 * 180.02562 * 6 5 3 8 8 C 1.47401 * 118.69380 * 359.73540 * 6 5 3 9 9 N 1.32208 * 121.24873 * 180.27227 * 8 6 5 10 10 O 1.21801 * 120.00137 * 180.25125 * 9 8 6 11 11 C 1.35876 * 119.45847 * 179.97438 * 2 1 3 12 12 N 1.35042 * 120.83922 * 0.02562 * 11 2 1 13 13 C 1.46901 * 111.00129 * 298.23396 * 12 11 2 14 14 C 1.53000 * 109.46964 * 148.18812 * 13 12 11 15 15 C 1.53002 * 109.46809 * 179.97438 * 14 13 12 16 16 C 1.52995 * 109.47589 * 300.00275 * 15 14 13 17 17 C 1.50701 * 109.47181 * 179.97438 * 16 15 14 18 18 H 1.07997 * 120.00181 * 0.02562 * 17 16 15 19 19 C 1.37884 * 119.99894 * 179.97438 * 17 16 15 20 20 N 1.31511 * 119.99694 * 180.02562 * 19 17 16 21 21 Si 1.86797 * 119.99813 * 0.02562 * 19 17 16 22 22 H 1.48501 * 109.46956 * 89.99986 * 21 19 17 23 23 H 1.48498 * 109.47130 * 209.99746 * 21 19 17 24 24 H 1.48497 * 109.47405 * 330.00104 * 21 19 17 25 25 C 1.52997 * 109.46925 * 59.99917 * 16 15 14 26 26 C 1.52997 * 109.47037 * 268.18856 * 13 12 11 27 27 H 1.08997 * 109.46866 * 275.10557 * 1 2 3 28 28 H 1.09002 * 109.47052 * 35.10146 * 1 2 3 29 29 H 1.09000 * 109.47137 * 155.10045 * 1 2 3 30 30 H 0.96696 * 114.00113 * 0.02562 * 7 6 5 31 31 H 1.00897 * 111.00147 * 62.19083 * 12 11 2 32 32 H 1.08997 * 109.46860 * 28.19083 * 13 12 11 33 33 H 1.08997 * 109.47110 * 60.00425 * 14 13 12 34 34 H 1.08994 * 109.47511 * 299.99932 * 14 13 12 35 35 H 1.09002 * 109.47060 * 180.02562 * 15 14 13 36 36 H 1.09005 * 109.47033 * 60.00524 * 15 14 13 37 37 H 1.08997 * 109.47171 * 299.99901 * 16 15 14 38 38 H 0.97007 * 119.99418 * 180.02562 * 20 19 17 39 39 H 1.08995 * 109.47416 * 60.00514 * 25 16 15 40 40 H 1.09003 * 109.47166 * 180.02562 * 25 16 15 41 41 H 1.08997 * 109.47481 * 299.99847 * 26 13 12 42 42 H 1.09002 * 109.47093 * 59.99955 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1250 1.1684 0.0000 4 8 1.4797 2.2016 0.0005 5 7 3.4558 1.2483 0.0005 6 6 4.2121 0.1659 0.0005 7 8 5.5575 0.2667 0.0016 8 6 3.5575 -1.1548 0.0060 9 7 4.2656 -2.2712 0.0116 10 8 3.7011 -3.3505 0.0114 11 6 2.1332 -1.1831 0.0005 12 7 1.4641 -2.3561 0.0005 13 6 0.6392 -2.4916 1.2085 14 6 -0.6153 -3.3039 0.8809 15 6 -1.4741 -3.4456 2.1392 16 6 -0.6715 -4.1630 3.2264 17 6 -1.5173 -4.3020 4.4659 18 1 -2.5264 -3.9175 4.4770 19 6 -1.0030 -4.9209 5.5856 20 7 -1.7412 -5.0426 6.6671 21 14 0.7423 -5.5865 5.5661 22 1 1.6800 -4.5301 6.0242 23 1 0.8353 -6.7583 6.4736 24 1 1.0990 -6.0002 4.1853 25 6 0.5829 -3.3507 3.5540 26 6 1.4415 -3.2087 2.2961 27 1 -0.3633 0.0915 1.0236 28 1 -0.3633 0.8408 -0.5909 29 1 -0.3633 -0.9321 -0.4327 30 1 5.8836 1.1770 0.0026 31 1 0.9035 -2.4526 -0.8328 32 1 0.3493 -1.5027 1.5633 33 1 -0.3254 -4.2929 0.5261 34 1 -1.1869 -2.7931 0.1061 35 1 -2.3676 -4.0247 1.9059 36 1 -1.7641 -2.4568 2.4944 37 1 -0.3816 -5.1518 2.8712 38 1 -1.3793 -5.4778 7.4549 39 1 0.2930 -2.3619 3.9092 40 1 1.1550 -3.8619 4.3282 41 1 1.7315 -4.1977 1.9413 42 1 2.3353 -2.6300 2.5295 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173328387.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:59:25 Heat of formation + Delta-G solvation = 6.870163 kcal Electronic energy + Delta-G solvation = -28602.912840 eV Core-core repulsion = 24586.868727 eV Total energy + Delta-G solvation = -4016.044113 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -42.73364 -39.94856 -39.71610 -38.86057 -37.36241 -35.55219 -34.55892 -32.68640 -31.80237 -30.49471 -29.67997 -28.34323 -26.01476 -24.82116 -23.72193 -22.79221 -22.55432 -21.15521 -20.47865 -19.39764 -18.94847 -18.34015 -17.43929 -16.79861 -16.69305 -16.31920 -16.16772 -16.06943 -15.38651 -15.05651 -14.60789 -14.48328 -14.18190 -13.86548 -13.66595 -13.62292 -13.32378 -13.06141 -12.78572 -12.15451 -12.03665 -11.93791 -11.56739 -11.50552 -11.24819 -10.91706 -10.72911 -10.71561 -10.64370 -10.25585 -9.98736 -9.83132 -9.70934 -9.21340 -9.11104 -9.05014 -8.98891 -8.57258 -6.12103 -4.12399 -0.47964 0.31388 1.57933 2.17872 2.23902 2.95408 3.16403 3.25556 3.38181 3.39067 3.53713 3.91447 4.11394 4.21060 4.37463 4.52155 4.64755 4.71543 4.79290 5.00680 5.13737 5.17733 5.20507 5.50309 5.53553 5.70252 5.77987 5.84317 5.90619 6.03769 6.19054 6.30906 6.38596 6.45397 6.46720 6.59976 6.74967 6.82911 7.08113 7.13520 7.44238 7.46515 7.71071 8.18670 8.45383 8.91162 9.50326 11.00985 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.016682 B = 0.004097 C = 0.003744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1678.038659 B = 6833.045835 C = 7476.563814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.543 5.543 3 C 0.665 3.335 4 O -0.507 6.507 5 N -0.614 5.614 6 C 0.511 3.489 7 O -0.421 6.421 8 C -0.221 4.221 9 N -0.317 5.317 10 O 0.148 5.852 11 C 0.501 3.499 12 N -0.618 5.618 13 C 0.083 3.917 14 C -0.123 4.123 15 C -0.095 4.095 16 C 0.014 3.986 17 C -0.518 4.518 18 H 0.072 0.928 19 C 0.070 3.930 20 N -0.901 5.901 21 Si 0.884 3.116 22 H -0.281 1.281 23 H -0.298 1.298 24 H -0.259 1.259 25 C -0.121 4.121 26 C -0.106 4.106 27 H 0.099 0.901 28 H 0.107 0.893 29 H 0.092 0.908 30 H 0.421 0.579 31 H 0.382 0.618 32 H 0.063 0.937 33 H 0.084 0.916 34 H 0.054 0.946 35 H 0.065 0.935 36 H 0.053 0.947 37 H 0.033 0.967 38 H 0.264 0.736 39 H 0.055 0.945 40 H 0.054 0.946 41 H 0.085 0.915 42 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.789 6.778 -17.113 19.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 N -0.262 5.262 3 C 0.366 3.634 4 O -0.379 6.379 5 N -0.373 5.373 6 C 0.305 3.695 7 O -0.214 6.214 8 C -0.342 4.342 9 N 0.189 4.811 10 O -0.241 6.241 11 C 0.277 3.723 12 N -0.261 5.261 13 C -0.022 4.022 14 C -0.161 4.161 15 C -0.133 4.133 16 C -0.005 4.005 17 C -0.555 4.555 18 H 0.090 0.910 19 C -0.132 4.132 20 N -0.539 5.539 21 Si 0.714 3.286 22 H -0.208 1.208 23 H -0.225 1.225 24 H -0.184 1.184 25 C -0.159 4.159 26 C -0.144 4.144 27 H 0.117 0.883 28 H 0.126 0.874 29 H 0.110 0.890 30 H 0.279 0.721 31 H 0.217 0.783 32 H 0.081 0.919 33 H 0.102 0.898 34 H 0.073 0.927 35 H 0.084 0.916 36 H 0.072 0.928 37 H 0.051 0.949 38 H 0.074 0.926 39 H 0.073 0.927 40 H 0.072 0.928 41 H 0.104 0.896 42 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 9.455 8.765 -16.717 21.111 hybrid contribution -0.634 0.275 0.065 0.694 sum 8.820 9.040 -16.652 20.899 Atomic orbital electron populations 1.22582 0.75715 1.05756 1.06069 1.48147 1.11744 1.08441 1.57913 1.17261 0.84819 0.82711 0.78576 1.90989 1.64970 1.31311 1.50594 1.69574 1.04403 1.27817 1.35475 1.21498 0.84389 0.87402 0.76180 1.85015 1.14675 1.36916 1.84774 1.21941 0.86653 0.95765 1.29810 1.73575 1.28229 0.94857 0.84448 1.93802 1.79856 1.18507 1.31906 1.21674 0.92355 0.82560 0.75681 1.57372 1.35574 1.24569 1.08592 1.22270 0.92700 1.00314 0.86874 1.21946 0.93737 1.00731 0.99695 1.21419 0.97820 1.00950 0.93112 1.19168 0.92019 0.94485 0.94803 1.21031 1.00792 1.38184 0.95523 0.90981 1.25041 0.97513 0.95270 0.95390 1.69900 1.36997 1.43733 1.03277 0.86887 0.85149 0.78051 0.78477 1.20801 1.22524 1.18355 1.22027 0.97779 1.01286 0.94839 1.21651 0.96949 1.01425 0.94422 0.88291 0.87438 0.88952 0.72067 0.78301 0.91950 0.89776 0.92744 0.91640 0.92775 0.94864 0.92641 0.92666 0.92813 0.89589 0.93752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.33 8.47 59.85 0.51 0.84 16 2 N -0.54 -5.99 2.88 -127.97 -0.37 -6.36 16 3 C 0.67 9.44 8.29 -88.73 -0.74 8.70 16 4 O -0.51 -8.47 16.64 5.09 0.08 -8.39 16 5 N -0.61 -8.32 10.34 -15.09 -0.16 -8.48 16 6 C 0.51 6.25 8.17 -13.73 -0.11 6.14 16 7 O -0.42 -4.06 13.45 -16.47 -0.22 -4.28 16 8 C -0.22 -2.85 6.93 -82.35 -0.57 -3.42 16 9 N -0.32 -4.36 11.50 33.61 0.39 -3.97 16 10 O 0.15 1.91 17.12 -4.24 -0.07 1.84 16 11 C 0.50 5.51 6.11 -154.37 -0.94 4.57 16 12 N -0.62 -5.79 3.82 -52.91 -0.20 -5.99 16 13 C 0.08 0.93 1.41 -67.71 -0.10 0.83 16 14 C -0.12 -1.32 5.04 -26.73 -0.13 -1.45 16 15 C -0.09 -1.47 5.14 -26.73 -0.14 -1.60 16 16 C 0.01 0.28 1.69 -91.78 -0.16 0.13 16 17 C -0.52 -13.40 9.14 -34.44 -0.31 -13.71 16 18 H 0.07 2.03 7.99 -52.49 -0.42 1.61 16 19 C 0.07 1.91 5.45 -17.82 -0.10 1.81 16 20 N -0.90 -26.69 13.96 55.43 0.77 -25.92 16 21 Si 0.88 20.97 24.37 -169.99 -4.14 16.83 16 22 H -0.28 -6.60 6.87 56.52 0.39 -6.21 16 23 H -0.30 -7.19 7.11 56.52 0.40 -6.79 16 24 H -0.26 -5.73 6.53 56.52 0.37 -5.36 16 25 C -0.12 -2.30 4.68 -26.76 -0.13 -2.43 16 26 C -0.11 -1.59 5.46 -26.76 -0.15 -1.74 16 27 H 0.10 0.83 7.13 -51.93 -0.37 0.46 16 28 H 0.11 0.84 7.48 -51.93 -0.39 0.46 16 29 H 0.09 0.49 5.03 -51.93 -0.26 0.23 16 30 H 0.42 1.97 8.99 45.56 0.41 2.38 16 31 H 0.38 2.39 7.33 -39.29 -0.29 2.11 16 32 H 0.06 0.71 5.00 -51.93 -0.26 0.45 16 33 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.05 0.41 7.18 -51.93 -0.37 0.03 16 35 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.03 0.69 7.20 -51.93 -0.37 0.32 16 38 H 0.26 7.38 8.31 -40.82 -0.34 7.05 16 39 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.05 1.14 3.27 -51.93 -0.17 0.97 16 41 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 42 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 334.33 15.07 5.04 5.04 Total: -1.00 -33.90 334.33 -6.15 -40.06 By element: Atomic # 1 Polarization: 5.17 SS G_CDS: -4.21 Total: 0.95 kcal Atomic # 6 Polarization: 1.74 SS G_CDS: -3.06 Total: -1.32 kcal Atomic # 7 Polarization: -51.16 SS G_CDS: 0.43 Total: -50.72 kcal Atomic # 8 Polarization: -10.62 SS G_CDS: -0.21 Total: -10.83 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -4.14 Total: 16.83 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -33.90 -6.15 -40.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173328387.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.927 kcal (2) G-P(sol) polarization free energy of solvation -33.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.057 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds