Wall clock time and date at job start Tue Mar 31 2020 13:52:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30897 * 1 3 3 Si 1.86808 * 119.99695 * 2 1 4 4 H 1.48504 * 109.46838 * 240.00057 * 3 2 1 5 5 H 1.48504 * 109.46920 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47276 * 120.00251 * 3 2 1 7 7 C 1.39857 * 120.00370 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00334 * 199.31392 * 7 2 1 9 9 C 1.41108 * 120.00243 * 19.31048 * 7 2 1 10 10 C 1.40895 * 120.15791 * 204.24350 * 9 7 2 11 11 C 1.36320 * 119.84115 * 180.02562 * 10 9 7 12 12 C 1.39591 * 120.15596 * 0.02562 * 11 10 9 13 13 N 1.38857 * 119.84044 * 179.97438 * 12 11 10 14 14 C 1.39033 * 119.99529 * 144.13877 * 13 12 11 15 15 C 1.39265 * 119.93149 * 151.45666 * 14 13 12 16 16 C 1.37603 * 120.06267 * 180.02562 * 15 14 13 17 17 C 1.39805 * 119.93723 * 0.02562 * 16 15 14 18 18 C 1.47538 * 120.06376 * 179.97438 * 17 16 15 19 19 O 1.21592 * 120.00590 * 359.72083 * 18 17 16 20 20 N 1.34779 * 119.99710 * 179.97438 * 18 17 16 21 21 C 1.46497 * 119.99982 * 179.72248 * 20 18 17 22 22 C 1.53001 * 117.50044 * 223.62234 * 21 20 18 23 23 C 1.53000 * 60.00234 * 252.51233 * 22 21 20 24 24 C 1.39798 * 119.87022 * 0.24906 * 17 16 15 25 25 C 1.37613 * 119.93119 * 359.49342 * 24 17 16 26 26 C 1.39595 * 120.31622 * 0.24847 * 12 11 10 27 27 C 1.36323 * 120.15502 * 359.44512 * 26 12 11 28 28 H 0.96996 * 120.00582 * 359.97438 * 1 2 3 29 29 H 1.08009 * 120.08098 * 0.02562 * 10 9 7 30 30 H 1.08000 * 119.92324 * 179.97438 * 11 10 9 31 31 H 0.96993 * 120.00578 * 324.13541 * 13 12 11 32 32 H 1.07994 * 119.96857 * 0.04374 * 15 14 13 33 33 H 1.08000 * 120.03413 * 179.97438 * 16 15 14 34 34 H 0.97007 * 120.00070 * 359.72724 * 20 18 17 35 35 H 1.09000 * 115.54958 * 9.33446 * 21 20 18 36 36 H 1.09000 * 117.49997 * 0.02562 * 22 21 20 37 37 H 1.09000 * 117.50222 * 145.02100 * 22 21 20 38 38 H 1.08998 * 117.49864 * 252.50932 * 23 22 21 39 39 H 1.08999 * 117.51692 * 107.48216 * 23 22 21 40 40 H 1.07994 * 120.03645 * 179.72291 * 24 17 16 41 41 H 1.07994 * 119.96594 * 180.25617 * 25 24 17 42 42 H 1.08000 * 119.92012 * 179.72582 * 26 12 11 43 43 H 1.08002 * 120.07694 * 180.24637 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2429 1.6179 0.0000 4 1 3.0967 1.6965 -1.2126 5 1 1.2778 2.7465 -0.0006 6 1 3.0967 1.6966 1.2124 7 6 2.0083 -1.2111 -0.0005 8 1 3.0428 -1.2376 0.3088 9 6 1.3625 -2.3987 -0.4052 10 6 1.8302 -3.6483 0.0473 11 6 1.2017 -4.7916 -0.3480 12 6 0.0975 -4.7262 -1.1996 13 7 -0.5374 -5.8948 -1.5986 14 6 -1.9176 -5.9140 -1.7649 15 6 -2.4953 -6.7919 -2.6788 16 6 -3.8610 -6.8128 -2.8460 17 6 -4.6687 -5.9512 -2.0978 18 6 -6.1333 -5.9709 -2.2752 19 8 -6.6385 -6.7333 -3.0764 20 7 -6.9107 -5.1401 -1.5528 21 6 -8.3645 -5.1553 -1.7333 22 6 -9.0810 -3.8056 -1.8103 23 6 -9.2267 -4.6790 -0.5626 24 6 -4.0856 -5.0671 -1.1854 25 6 -2.7196 -5.0544 -1.0186 26 6 -0.3679 -3.4920 -1.6564 27 6 0.2471 -2.3403 -1.2641 28 1 -0.4851 0.8400 0.0004 29 1 2.6847 -3.7004 0.7059 30 1 1.5593 -5.7502 -0.0023 31 1 -0.0182 -6.6977 -1.7613 32 1 -1.8708 -7.4571 -3.2566 33 1 -4.3084 -7.4935 -3.5551 34 1 -6.5077 -4.5320 -0.9134 35 1 -8.7535 -5.9677 -2.3471 36 1 -8.4707 -2.9063 -1.7270 37 1 -9.9415 -3.7298 -2.4749 38 1 -10.1832 -5.1778 -0.4064 39 1 -8.7124 -4.3547 0.3421 40 1 -4.7066 -4.3972 -0.6093 41 1 -2.2689 -4.3745 -0.3109 42 1 -1.2200 -3.4491 -2.3186 43 1 -0.1165 -1.3858 -1.6152 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001175606614.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:42 Heat of formation + Delta-G solvation = 37.336632 kcal Electronic energy + Delta-G solvation = -25108.832415 eV Core-core repulsion = 21504.958690 eV Total energy + Delta-G solvation = -3603.873725 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.16809 -39.11020 -37.67798 -36.98979 -35.12386 -33.39095 -32.87474 -30.73625 -29.96756 -29.63677 -28.27984 -25.08384 -23.50579 -22.68526 -22.64271 -21.63967 -21.11163 -20.68828 -20.06889 -17.88981 -17.49385 -17.05525 -16.52590 -16.37349 -15.29280 -14.96069 -14.84412 -14.70585 -14.16451 -14.05599 -13.89680 -13.48174 -13.28870 -12.93222 -12.78121 -12.52721 -12.30659 -12.16874 -11.91181 -11.85719 -11.66591 -11.48484 -11.20683 -11.05417 -10.86435 -10.74361 -10.64388 -10.18959 -9.95085 -9.85478 -9.53196 -9.20146 -8.88136 -8.79500 -7.98429 -7.71752 -6.94414 -6.71032 -4.37745 1.15020 1.67240 2.60785 2.90577 2.95764 2.99929 3.02529 3.03568 3.16067 3.69800 3.83209 3.94957 4.16388 4.49729 4.53452 4.71559 4.74341 4.88620 4.99975 5.20411 5.36079 5.52674 5.53830 5.55048 5.69541 5.75625 5.80983 5.84252 6.03946 6.13301 6.22624 6.38421 6.49765 6.58622 6.60807 6.74905 6.80622 6.92089 7.07015 7.10216 7.34721 7.43355 7.47358 7.63649 7.88697 8.02057 8.18504 8.26175 8.29946 8.48739 8.74739 8.83831 10.04152 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.013024 B = 0.002790 C = 0.002368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2149.285200 B =10032.804477 C =11820.794188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.787 5.787 2 C 0.076 3.924 3 Si 0.908 3.092 4 H -0.263 1.263 5 H -0.278 1.278 6 H -0.265 1.265 7 C -0.457 4.457 8 H 0.079 0.921 9 C 0.103 3.897 10 C -0.211 4.211 11 C -0.107 4.107 12 C 0.006 3.994 13 N -0.664 5.664 14 C 0.244 3.756 15 C -0.208 4.208 16 C -0.015 4.015 17 C -0.212 4.212 18 C 0.574 3.426 19 O -0.551 6.551 20 N -0.705 5.705 21 C 0.083 3.917 22 C -0.196 4.196 23 C -0.192 4.192 24 C -0.044 4.044 25 C -0.179 4.179 26 C -0.111 4.111 27 C -0.149 4.149 28 H 0.283 0.717 29 H 0.096 0.904 30 H 0.090 0.910 31 H 0.397 0.603 32 H 0.123 0.877 33 H 0.129 0.871 34 H 0.402 0.598 35 H 0.137 0.863 36 H 0.098 0.902 37 H 0.101 0.899 38 H 0.102 0.898 39 H 0.097 0.903 40 H 0.118 0.882 41 H 0.136 0.864 42 H 0.092 0.908 43 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.877 -6.240 -1.175 12.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.412 5.412 2 C -0.143 4.143 3 Si 0.732 3.268 4 H -0.187 1.187 5 H -0.203 1.203 6 H -0.189 1.189 7 C -0.486 4.486 8 H 0.097 0.903 9 C 0.100 3.900 10 C -0.231 4.231 11 C -0.128 4.128 12 C -0.087 4.087 13 N -0.282 5.282 14 C 0.137 3.863 15 C -0.230 4.230 16 C -0.035 4.035 17 C -0.217 4.217 18 C 0.365 3.635 19 O -0.430 6.430 20 N -0.356 5.356 21 C -0.023 4.023 22 C -0.234 4.234 23 C -0.230 4.230 24 C -0.064 4.064 25 C -0.201 4.201 26 C -0.131 4.131 27 C -0.169 4.169 28 H 0.094 0.906 29 H 0.114 0.886 30 H 0.108 0.892 31 H 0.232 0.768 32 H 0.141 0.859 33 H 0.147 0.853 34 H 0.238 0.762 35 H 0.155 0.845 36 H 0.116 0.884 37 H 0.119 0.881 38 H 0.120 0.880 39 H 0.116 0.884 40 H 0.136 0.864 41 H 0.153 0.847 42 H 0.110 0.890 43 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -11.357 -6.467 -1.677 13.176 hybrid contribution 0.727 0.928 0.423 1.252 sum -10.630 -5.539 -1.254 12.052 Atomic orbital electron populations 1.69834 1.07609 1.29602 1.34165 1.25922 0.94735 1.01432 0.92167 0.86367 0.80224 0.80119 0.80084 1.18742 1.20252 1.18937 1.19519 0.98753 0.91501 1.38802 0.90309 1.17636 0.91152 0.92065 0.89158 1.20580 1.04014 0.92393 1.06127 1.20113 0.97467 0.97251 0.97920 1.17119 0.99980 0.84928 1.06697 1.41648 1.02850 1.12118 1.71570 1.18093 0.84187 0.93227 0.90745 1.20666 0.95011 1.05443 1.01912 1.20837 0.92238 0.94989 0.95413 1.19406 0.91692 1.04746 1.05866 1.18274 0.86782 0.79051 0.79390 1.90718 1.75593 1.40380 1.36358 1.45322 1.05450 1.41489 1.43319 1.21555 0.79967 0.98805 1.01987 1.23435 1.03475 0.95528 1.00994 1.23380 1.01986 1.04258 0.93392 1.20950 0.94647 0.95495 0.95265 1.20951 0.92787 1.03996 1.02398 1.20355 1.00291 0.91942 1.00560 1.20927 0.99131 0.96668 1.00140 0.90629 0.88612 0.89152 0.76821 0.85860 0.85306 0.76233 0.84529 0.88382 0.88069 0.87962 0.88414 0.86408 0.84657 0.88997 0.86245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.17 11.02 55.54 0.61 -18.56 16 2 C 0.08 1.81 5.10 -17.34 -0.09 1.72 16 3 Si 0.91 17.71 29.60 -169.99 -5.03 12.68 16 4 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 5 H -0.28 -5.29 7.11 56.52 0.40 -4.89 16 6 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 7 C -0.46 -11.41 9.02 -37.89 -0.34 -11.75 16 8 H 0.08 1.89 7.92 -52.48 -0.42 1.47 16 9 C 0.10 2.56 5.57 -106.80 -0.60 1.96 16 10 C -0.21 -4.80 9.74 -39.27 -0.38 -5.18 16 11 C -0.11 -2.20 9.90 -39.77 -0.39 -2.59 16 12 C 0.01 0.12 5.73 -83.67 -0.48 -0.35 16 13 N -0.66 -10.99 5.37 -8.30 -0.04 -11.03 16 14 C 0.24 3.90 5.92 -83.84 -0.50 3.41 16 15 C -0.21 -2.95 9.93 -39.43 -0.39 -3.34 16 16 C -0.01 -0.22 9.58 -39.23 -0.38 -0.59 16 17 C -0.21 -3.09 5.88 -104.94 -0.62 -3.70 16 18 C 0.57 8.41 7.76 -12.47 -0.10 8.31 16 19 O -0.55 -9.61 15.90 5.29 0.08 -9.52 16 20 N -0.71 -8.13 5.52 -54.84 -0.30 -8.44 16 21 C 0.08 0.85 6.43 -67.93 -0.44 0.41 16 22 C -0.20 -1.61 10.46 -26.73 -0.28 -1.88 16 23 C -0.19 -1.48 10.46 -26.73 -0.28 -1.76 16 24 C -0.04 -0.62 9.53 -39.23 -0.37 -0.99 16 25 C -0.18 -2.92 8.11 -39.43 -0.32 -3.24 16 26 C -0.11 -2.42 7.93 -39.77 -0.32 -2.74 16 27 C -0.15 -3.61 8.64 -39.26 -0.34 -3.95 16 28 H 0.28 6.29 8.30 -40.82 -0.34 5.95 16 29 H 0.10 2.05 8.06 -52.48 -0.42 1.63 16 30 H 0.09 1.62 8.06 -52.49 -0.42 1.19 16 31 H 0.40 5.57 8.90 -40.82 -0.36 5.21 16 32 H 0.12 1.49 8.06 -52.49 -0.42 1.07 16 33 H 0.13 1.76 7.64 -52.49 -0.40 1.36 16 34 H 0.40 3.85 6.84 -40.82 -0.28 3.57 16 35 H 0.14 1.53 7.40 -51.93 -0.38 1.15 16 36 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.12 1.34 6.39 -52.49 -0.34 1.00 16 41 H 0.14 2.47 6.71 -52.49 -0.35 2.11 16 42 H 0.09 1.93 7.01 -52.49 -0.37 1.56 16 43 H 0.12 3.02 6.19 -52.49 -0.32 2.69 16 LS Contribution 364.45 15.07 5.49 5.49 Total: -1.00 -27.68 364.45 -11.11 -38.79 By element: Atomic # 1 Polarization: 22.17 SS G_CDS: -5.32 Total: 16.85 kcal Atomic # 6 Polarization: -19.66 SS G_CDS: -6.60 Total: -26.26 kcal Atomic # 7 Polarization: -38.30 SS G_CDS: 0.27 Total: -38.03 kcal Atomic # 8 Polarization: -9.61 SS G_CDS: 0.08 Total: -9.52 kcal Atomic # 14 Polarization: 17.71 SS G_CDS: -5.03 Total: 12.68 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -27.68 -11.11 -38.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175606614.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.128 kcal (2) G-P(sol) polarization free energy of solvation -27.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.791 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds