Wall clock time and date at job start Tue Mar 31 2020 13:52:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30897 * 1 3 3 Si 1.86808 * 119.99695 * 2 1 4 4 H 1.48504 * 109.46838 * 240.00057 * 3 2 1 5 5 H 1.48504 * 109.46920 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47276 * 120.00251 * 3 2 1 7 7 C 1.39857 * 120.00370 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00334 * 199.31392 * 7 2 1 9 9 C 1.41108 * 120.00243 * 19.31048 * 7 2 1 10 10 C 1.40895 * 120.15791 * 204.24350 * 9 7 2 11 11 C 1.36320 * 119.84115 * 180.02562 * 10 9 7 12 12 C 1.39591 * 120.15596 * 0.02562 * 11 10 9 13 13 N 1.38857 * 119.84044 * 179.97438 * 12 11 10 14 14 C 1.39033 * 119.99529 * 144.13877 * 13 12 11 15 15 C 1.39265 * 119.93149 * 151.45666 * 14 13 12 16 16 C 1.37603 * 120.06267 * 180.02562 * 15 14 13 17 17 C 1.39805 * 119.93723 * 0.02562 * 16 15 14 18 18 C 1.47538 * 120.06376 * 179.97438 * 17 16 15 19 19 O 1.21592 * 120.00590 * 359.72083 * 18 17 16 20 20 N 1.34779 * 119.99710 * 179.97438 * 18 17 16 21 21 C 1.46497 * 119.99982 * 179.72248 * 20 18 17 22 22 C 1.53001 * 117.50044 * 223.62234 * 21 20 18 23 23 C 1.53000 * 60.00234 * 252.51233 * 22 21 20 24 24 C 1.39798 * 119.87022 * 0.24906 * 17 16 15 25 25 C 1.37613 * 119.93119 * 359.49342 * 24 17 16 26 26 C 1.39595 * 120.31622 * 0.24847 * 12 11 10 27 27 C 1.36323 * 120.15502 * 359.44512 * 26 12 11 28 28 H 0.96996 * 120.00582 * 359.97438 * 1 2 3 29 29 H 1.08009 * 120.08098 * 0.02562 * 10 9 7 30 30 H 1.08000 * 119.92324 * 179.97438 * 11 10 9 31 31 H 0.96993 * 120.00578 * 324.13541 * 13 12 11 32 32 H 1.07994 * 119.96857 * 0.04374 * 15 14 13 33 33 H 1.08000 * 120.03413 * 179.97438 * 16 15 14 34 34 H 0.97007 * 120.00070 * 359.72724 * 20 18 17 35 35 H 1.09000 * 115.54958 * 9.33446 * 21 20 18 36 36 H 1.09000 * 117.49997 * 0.02562 * 22 21 20 37 37 H 1.09000 * 117.50222 * 145.02100 * 22 21 20 38 38 H 1.08998 * 117.49864 * 252.50932 * 23 22 21 39 39 H 1.08999 * 117.51692 * 107.48216 * 23 22 21 40 40 H 1.07994 * 120.03645 * 179.72291 * 24 17 16 41 41 H 1.07994 * 119.96594 * 180.25617 * 25 24 17 42 42 H 1.08000 * 119.92012 * 179.72582 * 26 12 11 43 43 H 1.08002 * 120.07694 * 180.24637 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2429 1.6179 0.0000 4 1 3.0967 1.6965 -1.2126 5 1 1.2778 2.7465 -0.0006 6 1 3.0967 1.6966 1.2124 7 6 2.0083 -1.2111 -0.0005 8 1 3.0428 -1.2376 0.3088 9 6 1.3625 -2.3987 -0.4052 10 6 1.8302 -3.6483 0.0473 11 6 1.2017 -4.7916 -0.3480 12 6 0.0975 -4.7262 -1.1996 13 7 -0.5374 -5.8948 -1.5986 14 6 -1.9176 -5.9140 -1.7649 15 6 -2.4953 -6.7919 -2.6788 16 6 -3.8610 -6.8128 -2.8460 17 6 -4.6687 -5.9512 -2.0978 18 6 -6.1333 -5.9709 -2.2752 19 8 -6.6385 -6.7333 -3.0764 20 7 -6.9107 -5.1401 -1.5528 21 6 -8.3645 -5.1553 -1.7333 22 6 -9.0810 -3.8056 -1.8103 23 6 -9.2267 -4.6790 -0.5626 24 6 -4.0856 -5.0671 -1.1854 25 6 -2.7196 -5.0544 -1.0186 26 6 -0.3679 -3.4920 -1.6564 27 6 0.2471 -2.3403 -1.2641 28 1 -0.4851 0.8400 0.0004 29 1 2.6847 -3.7004 0.7059 30 1 1.5593 -5.7502 -0.0023 31 1 -0.0182 -6.6977 -1.7613 32 1 -1.8708 -7.4571 -3.2566 33 1 -4.3084 -7.4935 -3.5551 34 1 -6.5077 -4.5320 -0.9134 35 1 -8.7535 -5.9677 -2.3471 36 1 -8.4707 -2.9063 -1.7270 37 1 -9.9415 -3.7298 -2.4749 38 1 -10.1832 -5.1778 -0.4064 39 1 -8.7124 -4.3547 0.3421 40 1 -4.7066 -4.3972 -0.6093 41 1 -2.2689 -4.3745 -0.3109 42 1 -1.2200 -3.4491 -2.3186 43 1 -0.1165 -1.3858 -1.6152 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001175606614.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:42 Heat of formation + Delta-G solvation = 23.693408 kcal Electronic energy + Delta-G solvation = -25109.424030 eV Core-core repulsion = 21504.958690 eV Total energy + Delta-G solvation = -3604.465340 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.33699 -40.42607 -39.08761 -37.96556 -36.61333 -34.97489 -33.95486 -31.97842 -31.48403 -31.29359 -29.74914 -26.70032 -24.74734 -23.92521 -23.26967 -22.82269 -22.71139 -21.98384 -21.37964 -19.25926 -18.99863 -18.31378 -17.90635 -17.48544 -16.96035 -16.07276 -15.91716 -15.80270 -15.65336 -15.37102 -15.11859 -14.88788 -14.55080 -14.42057 -14.03651 -13.77385 -13.73147 -13.60180 -13.43837 -13.19395 -12.79047 -12.62463 -12.50540 -12.36299 -12.30967 -12.10346 -11.71441 -11.61897 -11.47105 -11.22070 -11.03524 -10.85140 -9.97822 -9.81499 -9.53160 -9.43392 -8.66755 -8.23637 -6.18956 -0.06730 0.48114 0.96513 1.13389 1.39954 1.49496 1.53533 1.86376 2.09002 2.21586 2.59275 2.73603 2.89808 3.07863 3.74138 3.75803 3.80788 3.88954 4.01374 4.06625 4.08303 4.38190 4.38720 4.42968 4.53451 4.64178 4.76685 4.80587 4.96967 5.02401 5.05992 5.10414 5.17869 5.20903 5.29715 5.33083 5.40194 5.41912 5.52759 5.59573 5.70102 5.87288 5.95982 6.09106 6.29324 6.48141 6.54545 6.72977 6.93270 6.95251 7.10343 7.18196 8.32896 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.013024 B = 0.002790 C = 0.002368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2149.285200 B =10032.804477 C =11820.794188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.037 3.963 3 Si 0.977 3.023 4 H -0.263 1.263 5 H -0.269 1.269 6 H -0.260 1.260 7 C -0.496 4.496 8 H 0.076 0.924 9 C 0.069 3.931 10 C -0.220 4.220 11 C -0.111 4.111 12 C 0.034 3.966 13 N -0.663 5.663 14 C 0.228 3.772 15 C -0.193 4.193 16 C -0.022 4.022 17 C -0.210 4.210 18 C 0.571 3.429 19 O -0.584 6.584 20 N -0.693 5.693 21 C 0.052 3.948 22 C -0.187 4.187 23 C -0.172 4.172 24 C -0.037 4.037 25 C -0.195 4.195 26 C -0.115 4.115 27 C -0.168 4.168 28 H 0.288 0.712 29 H 0.102 0.898 30 H 0.123 0.877 31 H 0.412 0.588 32 H 0.149 0.851 33 H 0.137 0.863 34 H 0.411 0.589 35 H 0.122 0.878 36 H 0.100 0.900 37 H 0.112 0.888 38 H 0.117 0.883 39 H 0.106 0.894 40 H 0.143 0.857 41 H 0.113 0.887 42 H 0.096 0.904 43 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.965 -6.977 -1.125 13.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C -0.178 4.178 3 Si 0.798 3.202 4 H -0.187 1.187 5 H -0.193 1.193 6 H -0.184 1.184 7 C -0.526 4.526 8 H 0.094 0.906 9 C 0.067 3.933 10 C -0.240 4.240 11 C -0.131 4.131 12 C -0.061 4.061 13 N -0.284 5.284 14 C 0.124 3.876 15 C -0.215 4.215 16 C -0.042 4.042 17 C -0.215 4.215 18 C 0.361 3.639 19 O -0.466 6.466 20 N -0.343 5.343 21 C -0.054 4.054 22 C -0.226 4.226 23 C -0.210 4.210 24 C -0.056 4.056 25 C -0.217 4.217 26 C -0.136 4.136 27 C -0.188 4.188 28 H 0.098 0.902 29 H 0.121 0.879 30 H 0.141 0.859 31 H 0.250 0.750 32 H 0.167 0.833 33 H 0.155 0.845 34 H 0.249 0.751 35 H 0.140 0.860 36 H 0.118 0.882 37 H 0.131 0.869 38 H 0.136 0.864 39 H 0.124 0.876 40 H 0.161 0.839 41 H 0.131 0.869 42 H 0.114 0.886 43 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -12.483 -7.220 -1.611 14.510 hybrid contribution 0.835 0.941 0.362 1.309 sum -11.648 -6.280 -1.249 13.292 Atomic orbital electron populations 1.69886 1.08859 1.30594 1.35316 1.26679 0.95438 1.04319 0.91361 0.85331 0.78889 0.76024 0.79982 1.18723 1.19325 1.18395 1.19730 0.98982 0.92769 1.41077 0.90583 1.17941 0.92032 0.93159 0.90192 1.20786 1.04431 0.92538 1.06287 1.20400 0.97289 0.97956 0.97476 1.17129 0.98966 0.85570 1.04442 1.41465 1.03230 1.11506 1.72193 1.18226 0.83830 0.94051 0.91485 1.20861 0.95097 1.04640 1.00868 1.21050 0.92443 0.95117 0.95554 1.19581 0.91985 1.04454 1.05487 1.18307 0.86921 0.79231 0.79423 1.90702 1.76044 1.41924 1.37940 1.45248 1.06118 1.40503 1.42441 1.21679 0.79259 0.99988 1.04469 1.23504 1.03214 0.94364 1.01473 1.23472 1.01757 1.02828 0.92950 1.21117 0.94080 0.95424 0.94992 1.20895 0.93808 1.04228 1.02741 1.20391 1.00360 0.92145 1.00681 1.20832 0.99962 0.96760 1.01201 0.90152 0.87936 0.85925 0.75021 0.83307 0.84476 0.75104 0.85974 0.88189 0.86927 0.86442 0.87564 0.83948 0.86931 0.88557 0.88188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -41.45 11.02 21.81 0.24 -41.21 16 2 C 0.04 1.83 5.10 85.22 0.43 2.26 16 3 Si 0.98 37.06 29.60 68.60 2.03 39.09 16 4 H -0.26 -9.85 7.11 99.48 0.71 -9.14 16 5 H -0.27 -9.68 7.11 99.48 0.71 -8.97 16 6 H -0.26 -9.53 7.11 99.48 0.71 -8.83 16 7 C -0.50 -25.80 9.02 23.37 0.21 -25.59 16 8 H 0.08 3.81 7.92 -2.91 -0.02 3.78 16 9 C 0.07 3.58 5.57 -21.27 -0.12 3.46 16 10 C -0.22 -10.12 9.74 22.47 0.22 -9.90 16 11 C -0.11 -4.42 9.90 22.15 0.22 -4.20 16 12 C 0.03 1.32 5.73 38.68 0.22 1.54 16 13 N -0.66 -20.62 5.37 -180.17 -0.97 -21.59 16 14 C 0.23 6.91 5.92 38.49 0.23 7.14 16 15 C -0.19 -4.99 9.93 22.37 0.22 -4.77 16 16 C -0.02 -0.59 9.58 22.50 0.22 -0.37 16 17 C -0.21 -5.79 5.88 -20.07 -0.12 -5.91 16 18 C 0.57 16.05 7.76 86.70 0.67 16.73 16 19 O -0.58 -20.01 15.90 -4.00 -0.06 -20.08 16 20 N -0.69 -14.94 5.52 -445.69 -2.46 -17.39 16 21 C 0.05 0.98 6.43 44.99 0.29 1.27 16 22 C -0.19 -2.66 10.46 30.59 0.32 -2.34 16 23 C -0.17 -2.20 10.46 30.60 0.32 -1.88 16 24 C -0.04 -0.98 9.53 22.50 0.21 -0.77 16 25 C -0.19 -6.16 8.11 22.37 0.18 -5.98 16 26 C -0.12 -5.08 7.93 22.15 0.18 -4.91 16 27 C -0.17 -8.44 8.64 22.48 0.19 -8.25 16 28 H 0.29 13.20 8.30 -92.71 -0.77 12.43 16 29 H 0.10 4.44 8.06 -2.91 -0.02 4.41 16 30 H 0.12 4.06 8.06 -2.91 -0.02 4.04 16 31 H 0.41 10.39 8.90 -92.71 -0.83 9.57 16 32 H 0.15 3.07 8.06 -2.91 -0.02 3.05 16 33 H 0.14 3.49 7.64 -2.91 -0.02 3.47 16 34 H 0.41 7.07 6.84 -92.70 -0.63 6.43 16 35 H 0.12 2.69 7.40 -2.39 -0.02 2.67 16 36 H 0.10 1.40 8.14 -2.39 -0.02 1.39 16 37 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.12 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.14 2.97 6.39 -2.91 -0.02 2.95 16 41 H 0.11 4.12 6.71 -2.91 -0.02 4.10 16 42 H 0.10 4.08 7.01 -2.91 -0.02 4.06 16 43 H 0.10 5.34 6.19 -2.91 -0.02 5.32 16 Total: -1.00 -61.71 364.45 2.49 -59.22 By element: Atomic # 1 Polarization: 44.81 SS G_CDS: -0.40 Total: 44.42 kcal Atomic # 6 Polarization: -46.56 SS G_CDS: 4.10 Total: -42.46 kcal Atomic # 7 Polarization: -77.01 SS G_CDS: -3.19 Total: -80.19 kcal Atomic # 8 Polarization: -20.01 SS G_CDS: -0.06 Total: -20.08 kcal Atomic # 14 Polarization: 37.06 SS G_CDS: 2.03 Total: 39.09 kcal Total: -61.71 2.49 -59.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175606614.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.918 kcal (2) G-P(sol) polarization free energy of solvation -61.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.224 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds