Wall clock time and date at job start Tue Mar 31 2020 13:52:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30877 * 1 3 3 Si 1.86796 * 120.00518 * 2 1 4 4 H 1.48508 * 109.46750 * 273.03292 * 3 2 1 5 5 H 1.48494 * 109.47137 * 33.03100 * 3 2 1 6 6 H 1.48501 * 109.47226 * 153.03345 * 3 2 1 7 7 C 1.39930 * 119.99534 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00122 * 344.07572 * 7 2 1 9 9 C 1.41019 * 120.00002 * 164.07290 * 7 2 1 10 10 C 1.40742 * 120.30733 * 330.36508 * 9 7 2 11 11 C 1.36424 * 119.95473 * 180.02562 * 10 9 7 12 12 C 1.38926 * 120.59898 * 0.02562 * 11 10 9 13 13 C 1.38130 * 120.63156 * 359.67652 * 12 11 10 14 14 C 1.38789 * 120.02332 * 0.60656 * 13 12 11 15 15 N 1.38733 * 120.29388 * 179.70146 * 14 13 12 16 16 C 1.39022 * 119.99566 * 255.32664 * 15 14 13 17 17 C 1.39259 * 119.93561 * 5.71631 * 16 15 14 18 18 C 1.37613 * 120.06524 * 179.72103 * 17 16 15 19 19 C 1.39796 * 119.93243 * 0.53439 * 18 17 16 20 20 C 1.47539 * 120.06582 * 179.71933 * 19 18 17 21 21 O 1.21595 * 120.00031 * 180.02562 * 20 19 18 22 22 N 1.34773 * 119.99860 * 0.02562 * 20 19 18 23 23 C 1.46503 * 120.00178 * 179.97438 * 22 20 19 24 24 C 1.52991 * 117.50271 * 223.74707 * 23 22 20 25 25 C 1.52997 * 117.50152 * 155.08485 * 23 22 20 26 26 C 1.39803 * 119.87385 * 359.74000 * 19 18 17 27 27 C 1.37607 * 119.93262 * 0.02562 * 26 19 18 28 28 H 0.97006 * 119.99732 * 0.02562 * 1 2 3 29 29 H 1.08001 * 120.02541 * 0.02562 * 10 9 7 30 30 H 1.07994 * 119.70456 * 180.02562 * 11 10 9 31 31 H 1.08005 * 119.68266 * 179.97438 * 12 11 10 32 32 H 1.08005 * 119.98757 * 180.29758 * 13 12 11 33 33 H 0.96999 * 120.00264 * 75.05640 * 15 14 13 34 34 H 1.07996 * 119.96978 * 359.97438 * 17 16 15 35 35 H 1.08003 * 120.03210 * 180.25098 * 18 17 16 36 36 H 0.97000 * 120.00096 * 359.97438 * 22 20 19 37 37 H 1.09010 * 115.54696 * 9.41719 * 23 22 20 38 38 H 1.09002 * 117.49946 * 359.97438 * 24 23 22 39 39 H 1.08998 * 117.50033 * 145.01898 * 24 23 22 40 40 H 1.09004 * 117.50190 * 214.98430 * 25 23 22 41 41 H 1.08999 * 117.49545 * 359.97438 * 25 23 22 42 42 H 1.07995 * 120.03595 * 180.02562 * 26 19 18 43 43 H 1.07999 * 119.97057 * 180.02562 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2429 1.6176 0.0000 4 1 2.4262 2.0833 -1.3982 5 1 1.4740 2.6332 0.7631 6 1 3.5711 1.4223 0.6349 7 6 2.0083 -1.2119 0.0005 8 1 1.4993 -2.1291 0.2576 9 6 3.3779 -1.2356 -0.3346 10 6 3.9074 -0.2843 -1.2265 11 6 5.2334 -0.3142 -1.5461 12 6 6.0711 -1.2780 -0.9990 13 6 5.5786 -2.2196 -0.1164 14 6 4.2327 -2.2169 0.2223 15 7 3.7308 -3.1637 1.1033 16 6 2.9750 -4.2275 0.6240 17 6 2.8220 -4.4086 -0.7483 18 6 2.0791 -5.4640 -1.2258 19 6 1.4686 -6.3484 -0.3317 20 6 0.6664 -7.4773 -0.8404 21 8 0.1355 -8.2455 -0.0616 22 7 0.5221 -7.6571 -2.1682 23 6 -0.2740 -8.7784 -2.6734 24 6 0.2957 -9.5770 -3.8475 25 6 -0.8914 -8.6357 -4.0660 26 6 1.6193 -6.1608 1.0455 27 6 2.3672 -5.1064 1.5170 28 1 -0.4850 0.8401 -0.0004 29 1 3.2646 0.4689 -1.6576 30 1 5.6355 0.4180 -2.2305 31 1 7.1184 -1.2882 -1.2626 32 1 6.2402 -2.9612 0.3064 33 1 3.9106 -3.0857 2.0533 34 1 3.2901 -3.7225 -1.4385 35 1 1.9642 -5.6063 -2.2902 36 1 0.9453 -7.0440 -2.7895 37 1 -0.8455 -9.3249 -1.9231 38 1 1.2627 -9.2679 -4.2444 39 1 0.0988 -10.6488 -3.8698 40 1 -1.8689 -9.0886 -4.2321 41 1 -0.7056 -7.7073 -4.6061 42 1 1.1491 -6.8426 1.7385 43 1 2.4844 -4.9611 2.5808 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001175608658.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:46 Heat of formation + Delta-G solvation = 40.512453 kcal Electronic energy + Delta-G solvation = -25842.261460 eV Core-core repulsion = 22238.525448 eV Total energy + Delta-G solvation = -3603.736011 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -39.97424 -39.04883 -37.71013 -36.86721 -34.62641 -33.78139 -32.82049 -30.63106 -30.43653 -29.82609 -27.79083 -25.20191 -23.46231 -22.56338 -22.49769 -21.74669 -21.37681 -20.50321 -19.85487 -17.72332 -17.55386 -17.00802 -16.63708 -16.31300 -15.28095 -14.75642 -14.72530 -14.50978 -14.36838 -14.17721 -13.72009 -13.69213 -13.17155 -13.08659 -12.69806 -12.63665 -12.40928 -12.17582 -11.98616 -11.78009 -11.75909 -11.42677 -11.02669 -10.99516 -10.69769 -10.61686 -10.45423 -10.29288 -9.84803 -9.67926 -9.65066 -9.21811 -8.74380 -8.54884 -7.89142 -7.78649 -7.10083 -6.85361 -4.63884 1.48472 1.93600 2.33410 2.49717 2.99002 3.09790 3.18332 3.18925 3.20857 3.81241 3.83127 4.14314 4.34329 4.43824 4.63586 4.81194 4.84300 5.08521 5.17022 5.21462 5.42938 5.43927 5.63699 5.75861 5.82435 5.84410 5.88690 5.92775 5.97519 6.07674 6.23772 6.42529 6.46937 6.54059 6.67173 6.76178 6.80724 6.85198 6.98954 7.02715 7.27289 7.38652 7.50021 7.64042 7.67931 7.85191 8.10488 8.20932 8.28649 8.44328 8.60993 8.66514 9.90955 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.014155 B = 0.003301 C = 0.003165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1977.592835 B = 8481.091224 C = 8844.845475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.795 5.795 2 C 0.082 3.918 3 Si 0.914 3.086 4 H -0.269 1.269 5 H -0.291 1.291 6 H -0.244 1.244 7 C -0.426 4.426 8 H 0.097 0.903 9 C 0.094 3.906 10 C -0.233 4.233 11 C -0.072 4.072 12 C -0.245 4.245 13 C -0.071 4.071 14 C 0.004 3.996 15 N -0.651 5.651 16 C 0.270 3.730 17 C -0.183 4.183 18 C -0.037 4.037 19 C -0.224 4.224 20 C 0.576 3.424 21 O -0.554 6.554 22 N -0.707 5.707 23 C 0.085 3.915 24 C -0.197 4.197 25 C -0.192 4.192 26 C -0.008 4.008 27 C -0.219 4.219 28 H 0.287 0.713 29 H 0.103 0.897 30 H 0.094 0.906 31 H 0.096 0.904 32 H 0.097 0.903 33 H 0.396 0.604 34 H 0.130 0.870 35 H 0.114 0.886 36 H 0.401 0.599 37 H 0.137 0.863 38 H 0.096 0.904 39 H 0.100 0.900 40 H 0.102 0.898 41 H 0.097 0.903 42 H 0.127 0.873 43 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.839 -8.913 -4.271 10.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C -0.139 4.139 3 Si 0.741 3.259 4 H -0.196 1.196 5 H -0.219 1.219 6 H -0.168 1.168 7 C -0.454 4.454 8 H 0.115 0.885 9 C 0.089 3.911 10 C -0.253 4.253 11 C -0.090 4.090 12 C -0.265 4.265 13 C -0.090 4.090 14 C -0.089 4.089 15 N -0.269 5.269 16 C 0.161 3.839 17 C -0.206 4.206 18 C -0.057 4.057 19 C -0.229 4.229 20 C 0.368 3.632 21 O -0.434 6.434 22 N -0.357 5.357 23 C -0.021 4.021 24 C -0.236 4.236 25 C -0.231 4.231 26 C -0.028 4.028 27 C -0.242 4.242 28 H 0.098 0.902 29 H 0.120 0.880 30 H 0.112 0.888 31 H 0.114 0.886 32 H 0.115 0.885 33 H 0.232 0.768 34 H 0.148 0.852 35 H 0.132 0.868 36 H 0.237 0.763 37 H 0.154 0.846 38 H 0.115 0.885 39 H 0.118 0.882 40 H 0.120 0.880 41 H 0.116 0.884 42 H 0.145 0.855 43 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 2.237 -9.207 -3.791 10.206 hybrid contribution 0.426 1.307 -0.176 1.385 sum 2.663 -7.901 -3.968 9.233 Atomic orbital electron populations 1.69710 1.08110 1.30496 1.33500 1.26251 0.94787 1.01855 0.91006 0.86292 0.81002 0.79606 0.78973 1.19574 1.21907 1.16774 1.19473 0.92191 0.96069 1.37632 0.88499 1.17876 0.93192 0.90118 0.89873 1.20757 0.95594 1.04288 1.04616 1.20411 0.93784 0.96970 0.97853 1.20224 0.98321 1.01348 1.06637 1.20849 0.94317 0.97319 0.96563 1.17259 0.91322 0.97375 1.02947 1.41257 1.54294 1.23002 1.08324 1.18169 0.87346 0.85557 0.92802 1.20630 1.05437 1.00469 0.94047 1.20857 0.93946 0.92907 0.97992 1.19290 1.08982 1.00168 0.94478 1.18298 0.79369 0.84273 0.81287 1.90704 1.49518 1.46920 1.56221 1.45317 1.53165 1.29789 1.07456 1.21535 0.98000 0.91727 0.90838 1.23433 0.98284 0.98349 1.03493 1.23387 0.98174 1.01886 0.99637 1.20760 0.93324 0.94911 0.93818 1.20471 1.05903 0.99006 0.98798 0.90218 0.87954 0.88769 0.88622 0.88520 0.76815 0.85189 0.86790 0.76316 0.84581 0.88540 0.88168 0.87997 0.88409 0.85548 0.86040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.26 13.93 55.55 0.77 -19.49 16 2 C 0.08 2.01 5.43 -17.33 -0.09 1.92 16 3 Si 0.91 19.69 24.45 -169.99 -4.16 15.54 16 4 H -0.27 -5.63 6.62 56.52 0.37 -5.26 16 5 H -0.29 -6.14 7.11 56.52 0.40 -5.73 16 6 H -0.24 -5.37 6.83 56.52 0.39 -4.99 16 7 C -0.43 -10.63 8.98 -37.90 -0.34 -10.97 16 8 H 0.10 2.61 6.67 -52.48 -0.35 2.26 16 9 C 0.09 2.16 4.68 -106.64 -0.50 1.66 16 10 C -0.23 -5.15 7.07 -39.29 -0.28 -5.43 16 11 C -0.07 -1.42 9.97 -39.98 -0.40 -1.82 16 12 C -0.25 -4.62 10.03 -39.37 -0.40 -5.01 16 13 C -0.07 -1.34 9.96 -39.42 -0.39 -1.74 16 14 C 0.00 0.09 4.54 -83.27 -0.38 -0.29 16 15 N -0.65 -11.97 4.86 -8.04 -0.04 -12.01 16 16 C 0.27 4.92 5.39 -83.84 -0.45 4.47 16 17 C -0.18 -3.37 8.88 -39.43 -0.35 -3.72 16 18 C -0.04 -0.60 9.53 -39.23 -0.37 -0.97 16 19 C -0.22 -3.75 5.88 -104.94 -0.62 -4.37 16 20 C 0.58 9.51 7.76 -12.47 -0.10 9.41 16 21 O -0.55 -10.64 15.90 5.28 0.08 -10.56 16 22 N -0.71 -9.22 5.52 -54.85 -0.30 -9.52 16 23 C 0.09 0.97 6.43 -67.93 -0.44 0.54 16 24 C -0.20 -1.74 10.46 -26.70 -0.28 -2.02 16 25 C -0.19 -1.70 10.46 -26.70 -0.28 -1.98 16 26 C -0.01 -0.14 9.58 -39.23 -0.38 -0.52 16 27 C -0.22 -3.64 9.87 -39.43 -0.39 -4.03 16 28 H 0.29 6.65 8.30 -40.82 -0.34 6.31 16 29 H 0.10 2.28 4.47 -52.49 -0.23 2.05 16 30 H 0.09 1.62 8.06 -52.49 -0.42 1.20 16 31 H 0.10 1.57 8.06 -52.48 -0.42 1.15 16 32 H 0.10 1.64 8.06 -52.48 -0.42 1.21 16 33 H 0.40 6.41 8.83 -40.82 -0.36 6.05 16 34 H 0.13 2.56 6.75 -52.49 -0.35 2.21 16 35 H 0.11 1.49 6.39 -52.48 -0.34 1.15 16 36 H 0.40 4.42 6.84 -40.82 -0.28 4.14 16 37 H 0.14 1.70 7.40 -51.92 -0.38 1.32 16 38 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 39 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 40 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 41 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.13 2.02 7.64 -52.49 -0.40 1.62 16 43 H 0.12 1.75 8.06 -52.49 -0.42 1.33 16 LS Contribution 358.20 15.07 5.40 5.40 Total: -1.00 -28.08 358.20 -9.93 -38.01 By element: Atomic # 1 Polarization: 22.77 SS G_CDS: -5.26 Total: 17.51 kcal Atomic # 6 Polarization: -18.44 SS G_CDS: -6.42 Total: -24.87 kcal Atomic # 7 Polarization: -41.45 SS G_CDS: 0.43 Total: -41.02 kcal Atomic # 8 Polarization: -10.64 SS G_CDS: 0.08 Total: -10.56 kcal Atomic # 14 Polarization: 19.69 SS G_CDS: -4.16 Total: 15.54 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -28.08 -9.93 -38.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175608658.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.521 kcal (2) G-P(sol) polarization free energy of solvation -28.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.009 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds