Wall clock time and date at job start Tue Mar 31 2020 13:52:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30877 * 1 3 3 Si 1.86796 * 120.00518 * 2 1 4 4 H 1.48508 * 109.46750 * 273.03292 * 3 2 1 5 5 H 1.48494 * 109.47137 * 33.03100 * 3 2 1 6 6 H 1.48501 * 109.47226 * 153.03345 * 3 2 1 7 7 C 1.39930 * 119.99534 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00122 * 344.07572 * 7 2 1 9 9 C 1.41019 * 120.00002 * 164.07290 * 7 2 1 10 10 C 1.40742 * 120.30733 * 330.36508 * 9 7 2 11 11 C 1.36424 * 119.95473 * 180.02562 * 10 9 7 12 12 C 1.38926 * 120.59898 * 0.02562 * 11 10 9 13 13 C 1.38130 * 120.63156 * 359.67652 * 12 11 10 14 14 C 1.38789 * 120.02332 * 0.60656 * 13 12 11 15 15 N 1.38733 * 120.29388 * 179.70146 * 14 13 12 16 16 C 1.39022 * 119.99566 * 255.32664 * 15 14 13 17 17 C 1.39259 * 119.93561 * 5.71631 * 16 15 14 18 18 C 1.37613 * 120.06524 * 179.72103 * 17 16 15 19 19 C 1.39796 * 119.93243 * 0.53439 * 18 17 16 20 20 C 1.47539 * 120.06582 * 179.71933 * 19 18 17 21 21 O 1.21595 * 120.00031 * 180.02562 * 20 19 18 22 22 N 1.34773 * 119.99860 * 0.02562 * 20 19 18 23 23 C 1.46503 * 120.00178 * 179.97438 * 22 20 19 24 24 C 1.52991 * 117.50271 * 223.74707 * 23 22 20 25 25 C 1.52997 * 117.50152 * 155.08485 * 23 22 20 26 26 C 1.39803 * 119.87385 * 359.74000 * 19 18 17 27 27 C 1.37607 * 119.93262 * 0.02562 * 26 19 18 28 28 H 0.97006 * 119.99732 * 0.02562 * 1 2 3 29 29 H 1.08001 * 120.02541 * 0.02562 * 10 9 7 30 30 H 1.07994 * 119.70456 * 180.02562 * 11 10 9 31 31 H 1.08005 * 119.68266 * 179.97438 * 12 11 10 32 32 H 1.08005 * 119.98757 * 180.29758 * 13 12 11 33 33 H 0.96999 * 120.00264 * 75.05640 * 15 14 13 34 34 H 1.07996 * 119.96978 * 359.97438 * 17 16 15 35 35 H 1.08003 * 120.03210 * 180.25098 * 18 17 16 36 36 H 0.97000 * 120.00096 * 359.97438 * 22 20 19 37 37 H 1.09010 * 115.54696 * 9.41719 * 23 22 20 38 38 H 1.09002 * 117.49946 * 359.97438 * 24 23 22 39 39 H 1.08998 * 117.50033 * 145.01898 * 24 23 22 40 40 H 1.09004 * 117.50190 * 214.98430 * 25 23 22 41 41 H 1.08999 * 117.49545 * 359.97438 * 25 23 22 42 42 H 1.07995 * 120.03595 * 180.02562 * 26 19 18 43 43 H 1.07999 * 119.97057 * 180.02562 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2429 1.6176 0.0000 4 1 2.4262 2.0833 -1.3982 5 1 1.4740 2.6332 0.7631 6 1 3.5711 1.4223 0.6349 7 6 2.0083 -1.2119 0.0005 8 1 1.4993 -2.1291 0.2576 9 6 3.3779 -1.2356 -0.3346 10 6 3.9074 -0.2843 -1.2265 11 6 5.2334 -0.3142 -1.5461 12 6 6.0711 -1.2780 -0.9990 13 6 5.5786 -2.2196 -0.1164 14 6 4.2327 -2.2169 0.2223 15 7 3.7308 -3.1637 1.1033 16 6 2.9750 -4.2275 0.6240 17 6 2.8220 -4.4086 -0.7483 18 6 2.0791 -5.4640 -1.2258 19 6 1.4686 -6.3484 -0.3317 20 6 0.6664 -7.4773 -0.8404 21 8 0.1355 -8.2455 -0.0616 22 7 0.5221 -7.6571 -2.1682 23 6 -0.2740 -8.7784 -2.6734 24 6 0.2957 -9.5770 -3.8475 25 6 -0.8914 -8.6357 -4.0660 26 6 1.6193 -6.1608 1.0455 27 6 2.3672 -5.1064 1.5170 28 1 -0.4850 0.8401 -0.0004 29 1 3.2646 0.4689 -1.6576 30 1 5.6355 0.4180 -2.2305 31 1 7.1184 -1.2882 -1.2626 32 1 6.2402 -2.9612 0.3064 33 1 3.9106 -3.0857 2.0533 34 1 3.2901 -3.7225 -1.4385 35 1 1.9642 -5.6063 -2.2902 36 1 0.9453 -7.0440 -2.7895 37 1 -0.8455 -9.3249 -1.9231 38 1 1.2627 -9.2679 -4.2444 39 1 0.0988 -10.6488 -3.8698 40 1 -1.8689 -9.0886 -4.2321 41 1 -0.7056 -7.7073 -4.6061 42 1 1.1491 -6.8426 1.7385 43 1 2.4844 -4.9611 2.5808 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001175608658.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:45 Heat of formation + Delta-G solvation = 25.002002 kcal Electronic energy + Delta-G solvation = -25842.934043 eV Core-core repulsion = 22238.525448 eV Total energy + Delta-G solvation = -3604.408595 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.27667 -40.46321 -39.09315 -37.92679 -36.08848 -35.52372 -33.96085 -32.29470 -31.80486 -31.27364 -29.26622 -26.88152 -24.75430 -23.88858 -23.25869 -23.20108 -22.68880 -21.80216 -21.28454 -19.30457 -18.98433 -18.35274 -18.13741 -17.42111 -16.91300 -16.07523 -15.98597 -15.83742 -15.80367 -15.51408 -15.16762 -14.98181 -14.73443 -14.36363 -14.31086 -13.82328 -13.79702 -13.60309 -13.43084 -13.33463 -12.72105 -12.62492 -12.49554 -12.35175 -12.16981 -11.94865 -11.83393 -11.56937 -11.45589 -11.28058 -10.99555 -10.82025 -9.90629 -9.76027 -9.50329 -9.41966 -8.88648 -8.29001 -6.45425 0.12722 0.57127 0.71825 0.85068 1.26084 1.39929 1.47695 1.91861 2.09233 2.12839 2.62005 2.73007 2.94619 3.13202 3.47771 3.78350 3.86305 3.92627 4.06216 4.08555 4.10920 4.32022 4.42668 4.45165 4.58709 4.67973 4.77318 4.78108 4.82877 4.85040 5.02928 5.05239 5.08962 5.22081 5.29719 5.32848 5.43086 5.44389 5.51111 5.56763 5.75092 5.86704 5.92553 6.02536 6.23813 6.35975 6.51629 6.58079 6.73761 6.86077 7.10616 7.22180 8.18440 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.014155 B = 0.003301 C = 0.003165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1977.592835 B = 8481.091224 C = 8844.845475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.847 5.847 2 C 0.045 3.955 3 Si 0.965 3.035 4 H -0.260 1.260 5 H -0.287 1.287 6 H -0.250 1.250 7 C -0.454 4.454 8 H 0.063 0.937 9 C 0.077 3.923 10 C -0.249 4.249 11 C -0.078 4.078 12 C -0.224 4.224 13 C -0.078 4.078 14 C 0.014 3.986 15 N -0.655 5.655 16 C 0.255 3.745 17 C -0.201 4.201 18 C -0.031 4.031 19 C -0.229 4.229 20 C 0.573 3.427 21 O -0.588 6.588 22 N -0.693 5.693 23 C 0.049 3.951 24 C -0.179 4.179 25 C -0.176 4.176 26 C -0.018 4.018 27 C -0.217 4.217 28 H 0.291 0.709 29 H 0.096 0.904 30 H 0.125 0.875 31 H 0.131 0.869 32 H 0.123 0.877 33 H 0.406 0.594 34 H 0.114 0.886 35 H 0.144 0.856 36 H 0.411 0.589 37 H 0.119 0.881 38 H 0.104 0.896 39 H 0.114 0.886 40 H 0.116 0.884 41 H 0.105 0.895 42 H 0.132 0.868 43 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.287 -9.342 -5.773 12.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.473 5.473 2 C -0.170 4.170 3 Si 0.790 3.210 4 H -0.186 1.186 5 H -0.215 1.215 6 H -0.174 1.174 7 C -0.483 4.483 8 H 0.081 0.919 9 C 0.073 3.927 10 C -0.269 4.269 11 C -0.097 4.097 12 C -0.243 4.243 13 C -0.097 4.097 14 C -0.080 4.080 15 N -0.275 5.275 16 C 0.148 3.852 17 C -0.224 4.224 18 C -0.050 4.050 19 C -0.234 4.234 20 C 0.364 3.636 21 O -0.471 6.471 22 N -0.343 5.343 23 C -0.057 4.057 24 C -0.217 4.217 25 C -0.214 4.214 26 C -0.038 4.038 27 C -0.239 4.239 28 H 0.101 0.899 29 H 0.114 0.886 30 H 0.143 0.857 31 H 0.149 0.851 32 H 0.141 0.859 33 H 0.243 0.757 34 H 0.132 0.868 35 H 0.161 0.839 36 H 0.249 0.751 37 H 0.137 0.863 38 H 0.122 0.878 39 H 0.132 0.868 40 H 0.134 0.866 41 H 0.123 0.877 42 H 0.150 0.850 43 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 4.697 -9.649 -5.335 11.985 hybrid contribution -0.126 1.244 0.211 1.268 sum 4.571 -8.405 -5.124 10.853 Atomic orbital electron populations 1.69761 1.09206 1.31204 1.37089 1.26846 0.95252 1.04158 0.90711 0.85516 0.79454 0.76782 0.79264 1.18566 1.21459 1.17405 1.19311 0.93381 0.95136 1.40508 0.91932 1.18055 0.92791 0.91385 0.90462 1.20888 0.96874 1.04242 1.04869 1.20782 0.92870 0.97884 0.98123 1.20741 0.99888 0.99423 1.04253 1.21192 0.93887 0.98061 0.96577 1.17473 0.91866 0.96480 1.02143 1.41220 1.54761 1.22854 1.08628 1.18320 0.87804 0.85954 0.93154 1.20632 1.06633 1.01098 0.94026 1.21080 0.92664 0.91759 0.99498 1.19490 1.08825 1.00382 0.94733 1.18278 0.79197 0.83859 0.82271 1.90682 1.51047 1.48046 1.57300 1.45211 1.52525 1.30190 1.06417 1.21675 0.99819 0.92393 0.91794 1.23512 0.98684 0.99074 1.00462 1.23483 0.98998 1.02252 0.96681 1.20956 0.93400 0.95114 0.94287 1.20670 1.05121 0.98388 0.99731 0.89861 0.88640 0.85701 0.85065 0.85877 0.75733 0.86797 0.83879 0.75140 0.86294 0.87778 0.86751 0.86592 0.87699 0.84983 0.84025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -45.38 13.93 21.83 0.30 -45.07 16 2 C 0.05 2.31 5.43 85.25 0.46 2.77 16 3 Si 0.97 41.18 24.45 68.60 1.68 42.86 16 4 H -0.26 -10.52 6.62 99.48 0.66 -9.86 16 5 H -0.29 -11.84 7.11 99.48 0.71 -11.13 16 6 H -0.25 -10.73 6.83 99.48 0.68 -10.06 16 7 C -0.45 -23.60 8.98 23.36 0.21 -23.39 16 8 H 0.06 3.58 6.67 -2.91 -0.02 3.57 16 9 C 0.08 3.55 4.68 -21.17 -0.10 3.45 16 10 C -0.25 -10.73 7.07 22.46 0.16 -10.57 16 11 C -0.08 -2.85 9.97 22.01 0.22 -2.63 16 12 C -0.22 -7.44 10.03 22.41 0.22 -7.22 16 13 C -0.08 -2.71 9.96 22.38 0.22 -2.48 16 14 C 0.01 0.57 4.54 39.00 0.18 0.74 16 15 N -0.65 -23.95 4.86 -179.35 -0.87 -24.83 16 16 C 0.26 9.39 5.39 38.49 0.21 9.59 16 17 C -0.20 -7.47 8.88 22.37 0.20 -7.27 16 18 C -0.03 -0.98 9.53 22.50 0.21 -0.77 16 19 C -0.23 -7.69 5.88 -20.07 -0.12 -7.81 16 20 C 0.57 18.95 7.76 86.70 0.67 19.62 16 21 O -0.59 -23.03 15.90 -4.01 -0.06 -23.10 16 22 N -0.69 -17.55 5.52 -445.70 -2.46 -20.01 16 23 C 0.05 1.07 6.43 44.99 0.29 1.35 16 24 C -0.18 -2.73 10.46 30.61 0.32 -2.41 16 25 C -0.18 -2.71 10.46 30.62 0.32 -2.39 16 26 C -0.02 -0.60 9.58 22.50 0.22 -0.39 16 27 C -0.22 -7.24 9.87 22.37 0.22 -7.02 16 28 H 0.29 14.17 8.30 -92.70 -0.77 13.40 16 29 H 0.10 4.20 4.47 -2.91 -0.01 4.19 16 30 H 0.13 3.75 8.06 -2.91 -0.02 3.73 16 31 H 0.13 3.51 8.06 -2.91 -0.02 3.49 16 32 H 0.12 3.67 8.06 -2.91 -0.02 3.65 16 33 H 0.41 12.97 8.83 -92.71 -0.82 12.15 16 34 H 0.11 4.55 6.75 -2.91 -0.02 4.53 16 35 H 0.14 3.57 6.39 -2.91 -0.02 3.55 16 36 H 0.41 8.47 6.84 -92.71 -0.63 7.83 16 37 H 0.12 3.02 7.40 -2.38 -0.02 3.00 16 38 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.12 1.48 8.14 -2.38 -0.02 1.46 16 41 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 42 H 0.13 4.28 7.64 -2.91 -0.02 4.26 16 43 H 0.14 4.03 8.06 -2.91 -0.02 4.00 16 Total: -1.00 -63.10 358.20 2.25 -60.85 By element: Atomic # 1 Polarization: 46.56 SS G_CDS: -0.46 Total: 46.10 kcal Atomic # 6 Polarization: -40.92 SS G_CDS: 4.12 Total: -36.81 kcal Atomic # 7 Polarization: -86.88 SS G_CDS: -3.03 Total: -89.91 kcal Atomic # 8 Polarization: -23.03 SS G_CDS: -0.06 Total: -23.10 kcal Atomic # 14 Polarization: 41.18 SS G_CDS: 1.68 Total: 42.86 kcal Total: -63.10 2.25 -60.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175608658.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.852 kcal (2) G-P(sol) polarization free energy of solvation -63.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.850 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds