Wall clock time and date at job start Tue Mar 31 2020 13:58:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31405 * 1 3 3 Si 1.86800 * 120.00088 * 2 1 4 4 H 1.48502 * 109.47397 * 185.02321 * 3 2 1 5 5 H 1.48500 * 109.46848 * 305.02090 * 3 2 1 6 6 H 1.48501 * 109.46954 * 65.01740 * 3 2 1 7 7 C 1.38953 * 120.00337 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00160 * 202.73690 * 7 2 1 9 9 N 1.37105 * 119.99671 * 22.73185 * 7 2 1 10 10 C 1.46495 * 119.99729 * 190.37356 * 9 7 2 11 11 C 1.50701 * 109.47019 * 269.99842 * 10 9 7 12 12 C 1.38232 * 120.00250 * 269.73254 * 11 10 9 13 13 C 1.38233 * 120.00061 * 179.76618 * 12 11 10 14 14 C 1.38235 * 120.00163 * 0.50313 * 13 12 11 15 15 C 1.38238 * 119.99655 * 359.74853 * 14 13 12 16 16 C 1.38230 * 119.99879 * 359.97438 * 15 14 13 17 17 C 1.34773 * 119.99771 * 10.37304 * 9 7 2 18 18 O 1.21295 * 120.00059 * 62.72081 * 17 9 7 19 19 C 1.50699 * 119.99787 * 242.71755 * 17 9 7 20 20 C 1.50699 * 115.55073 * 213.13602 * 19 17 9 21 21 C 1.38224 * 119.61951 * 22.99866 * 20 19 17 22 22 C 1.38633 * 119.16368 * 180.02562 * 21 20 19 23 23 C 1.38662 * 118.42051 * 0.02562 * 22 21 20 24 24 C 1.38187 * 119.16546 * 359.97438 * 23 22 21 25 25 N 1.31859 * 119.62066 * 203.29828 * 20 19 17 26 26 C 1.52995 * 117.51926 * 358.83601 * 19 17 9 27 27 C 1.53001 * 60.00267 * 107.48559 * 26 19 17 28 28 H 0.97000 * 120.00259 * 4.93683 * 1 2 3 29 29 H 1.08995 * 109.47742 * 30.00044 * 10 9 7 30 30 H 1.08996 * 109.47363 * 150.00333 * 10 9 7 31 31 H 1.08001 * 120.00052 * 359.97438 * 12 11 10 32 32 H 1.08002 * 120.00231 * 180.22545 * 13 12 11 33 33 H 1.08001 * 120.00401 * 179.72693 * 14 13 12 34 34 H 1.07996 * 119.99806 * 179.97438 * 15 14 13 35 35 H 1.08004 * 119.99610 * 179.97438 * 16 15 14 36 36 H 1.08002 * 120.41988 * 0.02562 * 21 20 19 37 37 H 1.07997 * 120.78771 * 180.02562 * 22 21 20 38 38 H 1.07999 * 120.42305 * 180.02562 * 23 22 21 39 39 H 1.07995 * 119.61804 * 179.97438 * 24 23 22 40 40 H 1.09001 * 117.50038 * 214.97147 * 26 19 17 41 41 H 1.09000 * 117.50093 * 359.97438 * 26 19 17 42 42 H 1.08999 * 117.49420 * 252.51607 * 27 26 19 43 43 H 1.08993 * 117.50265 * 107.49016 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7034 1.3491 -0.1226 5 1 1.7997 2.4481 -1.1466 6 1 1.9835 2.3420 1.2691 7 6 2.0089 -1.2033 -0.0005 8 1 3.0259 -1.2398 0.3609 9 7 1.4032 -2.3444 -0.4599 10 6 2.0421 -3.6465 -0.2538 11 6 2.9417 -3.9552 -1.4227 12 6 2.4438 -4.6378 -2.5167 13 6 3.2678 -4.9168 -3.5910 14 6 4.5925 -4.5223 -3.5668 15 6 5.0918 -3.8443 -2.4704 16 6 4.2662 -3.5603 -1.3987 17 6 0.2202 -2.2680 -1.1010 18 8 0.1367 -1.6647 -2.1500 19 6 -0.9988 -2.9322 -0.5146 20 6 -1.9858 -3.4778 -1.5141 21 6 -1.5625 -3.7881 -2.7928 22 6 -2.4786 -4.2889 -3.7049 23 6 -3.7922 -4.4592 -3.2950 24 6 -4.1421 -4.1270 -2.0001 25 7 -3.2447 -3.6482 -1.1606 26 6 -0.8232 -3.7008 0.7966 27 6 -1.5576 -2.3586 0.7892 28 1 -0.4850 0.8369 -0.0723 29 1 2.6323 -3.6208 0.6621 30 1 1.2764 -4.4178 -0.1710 31 1 1.4101 -4.9503 -2.5337 32 1 2.8779 -5.4469 -4.4474 33 1 5.2374 -4.7441 -4.4042 34 1 6.1267 -3.5364 -2.4513 35 1 4.6565 -3.0309 -0.5420 36 1 -0.5310 -3.6422 -3.0779 37 1 -2.1763 -4.5404 -4.7107 38 1 -4.5325 -4.8474 -3.9788 39 1 -5.1633 -4.2563 -1.6732 40 1 -1.4216 -4.6011 0.9362 41 1 0.1743 -3.7266 1.2352 42 1 -1.0432 -1.5011 1.2229 43 1 -2.6391 -2.3759 0.9239 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001176805123.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:58:09 Heat of formation + Delta-G solvation = 69.871059 kcal Electronic energy + Delta-G solvation = -27626.298753 eV Core-core repulsion = 24023.835827 eV Total energy + Delta-G solvation = -3602.462926 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.64590 -40.46506 -39.61712 -37.19574 -36.36664 -34.05377 -33.25728 -31.96841 -31.70158 -31.67891 -27.56147 -26.83295 -25.42164 -24.35598 -23.41664 -23.18855 -23.04412 -22.00426 -20.60518 -18.76147 -18.04693 -17.48475 -17.26543 -16.87296 -16.80444 -16.25740 -16.09986 -15.85222 -15.72220 -15.54753 -14.95070 -14.78970 -14.27253 -14.15650 -14.01141 -13.73757 -13.58142 -13.48945 -13.13345 -12.95582 -12.77820 -12.72810 -12.53715 -12.22256 -12.08070 -11.93786 -11.74524 -11.51691 -11.39958 -10.92870 -10.76729 -10.37956 -10.25588 -9.72785 -9.65001 -9.59710 -9.24688 -8.17463 -5.54536 0.20746 0.40509 0.52321 0.59420 1.36203 1.45558 1.52782 1.84751 2.40031 2.75487 2.88589 3.07752 3.23760 3.36874 3.55651 3.77283 3.99420 4.02569 4.06744 4.12633 4.19495 4.24183 4.30714 4.33045 4.37292 4.46975 4.50771 4.68333 4.70437 4.80920 4.82548 4.86857 4.91547 5.11135 5.20172 5.23577 5.24262 5.27496 5.34585 5.51240 5.64397 5.66610 5.68190 5.83724 5.85963 6.11520 6.22136 7.02817 7.10512 7.39992 7.68648 8.07386 8.91749 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.009341 B = 0.006579 C = 0.004476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2996.887215 B = 4255.052044 C = 6254.247999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C -0.023 4.023 3 Si 0.958 3.042 4 H -0.263 1.263 5 H -0.305 1.305 6 H -0.281 1.281 7 C -0.291 4.291 8 H 0.093 0.907 9 N -0.557 5.557 10 C 0.164 3.836 11 C -0.107 4.107 12 C -0.126 4.126 13 C -0.129 4.129 14 C -0.129 4.129 15 C -0.129 4.129 16 C -0.115 4.115 17 C 0.634 3.366 18 O -0.562 6.562 19 C -0.133 4.133 20 C 0.163 3.837 21 C -0.173 4.173 22 C -0.077 4.077 23 C -0.173 4.173 24 C 0.088 3.912 25 N -0.506 5.506 26 C -0.134 4.134 27 C -0.110 4.110 28 H 0.257 0.743 29 H 0.082 0.918 30 H 0.075 0.925 31 H 0.108 0.892 32 H 0.139 0.861 33 H 0.147 0.853 34 H 0.142 0.858 35 H 0.120 0.880 36 H 0.110 0.890 37 H 0.159 0.841 38 H 0.175 0.825 39 H 0.187 0.813 40 H 0.107 0.893 41 H 0.106 0.894 42 H 0.105 0.895 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.360 -13.493 -4.131 14.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.222 4.222 3 Si 0.786 3.214 4 H -0.187 1.187 5 H -0.233 1.233 6 H -0.207 1.207 7 C -0.418 4.418 8 H 0.111 0.889 9 N -0.285 5.285 10 C 0.041 3.959 11 C -0.109 4.109 12 C -0.145 4.145 13 C -0.147 4.147 14 C -0.147 4.147 15 C -0.146 4.146 16 C -0.133 4.133 17 C 0.426 3.574 18 O -0.439 6.439 19 C -0.138 4.138 20 C 0.027 3.973 21 C -0.194 4.194 22 C -0.103 4.103 23 C -0.192 4.192 24 C -0.069 4.069 25 N -0.216 5.216 26 C -0.172 4.172 27 C -0.148 4.148 28 H 0.067 0.933 29 H 0.100 0.900 30 H 0.094 0.906 31 H 0.126 0.874 32 H 0.157 0.843 33 H 0.165 0.835 34 H 0.160 0.840 35 H 0.138 0.862 36 H 0.128 0.872 37 H 0.177 0.823 38 H 0.192 0.808 39 H 0.204 0.796 40 H 0.126 0.874 41 H 0.124 0.876 42 H 0.123 0.877 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -0.789 -12.811 -3.761 13.375 hybrid contribution 0.529 1.365 -0.873 1.704 sum -0.260 -11.446 -4.634 12.351 Atomic orbital electron populations 1.69565 1.06341 1.27178 1.50757 1.25535 0.95938 1.01431 0.99260 0.85385 0.79196 0.80282 0.76557 1.18706 1.23307 1.20696 1.19472 0.97377 0.86195 1.38734 0.88916 1.42684 1.20301 1.04886 1.60608 1.20256 0.94934 0.85460 0.95258 1.20676 0.95297 0.97241 0.97652 1.21112 0.99385 0.99674 0.94340 1.21360 0.94434 1.00655 0.98201 1.21427 0.95713 0.98696 0.98820 1.21428 1.00587 0.98913 0.93706 1.21197 0.93469 0.99000 0.99683 1.18496 0.83134 0.74934 0.80813 1.90384 1.86653 1.42557 1.24307 1.20336 0.96714 1.07097 0.89664 1.19978 0.90683 0.94143 0.92504 1.21932 1.01527 1.01133 0.94768 1.21896 0.93377 0.94964 1.00028 1.22475 0.97054 1.01730 0.97958 1.23357 0.99460 0.93584 0.90543 1.67294 1.01548 1.13918 1.38827 1.23093 1.02670 0.95863 0.95531 1.22963 0.99671 0.97601 0.94523 0.93282 0.89973 0.90643 0.87423 0.84275 0.83513 0.84045 0.86155 0.87176 0.82322 0.80759 0.79600 0.87439 0.87564 0.87662 0.88597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -51.55 8.64 21.66 0.19 -51.36 16 2 C -0.02 -1.27 4.95 84.93 0.42 -0.85 16 3 Si 0.96 45.35 29.61 68.60 2.03 47.38 16 4 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 5 H -0.31 -15.32 7.11 99.48 0.71 -14.61 16 6 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 7 C -0.29 -15.27 9.65 84.04 0.81 -14.46 16 8 H 0.09 4.60 7.93 -2.91 -0.02 4.58 16 9 N -0.56 -26.87 2.14 -639.62 -1.37 -28.24 16 10 C 0.16 6.33 4.44 85.63 0.38 6.71 16 11 C -0.11 -3.91 5.46 -19.87 -0.11 -4.02 16 12 C -0.13 -4.33 9.70 22.27 0.22 -4.11 16 13 C -0.13 -3.69 10.05 22.27 0.22 -3.47 16 14 C -0.13 -3.38 10.05 22.27 0.22 -3.15 16 15 C -0.13 -3.64 10.05 22.27 0.22 -3.41 16 16 C -0.11 -3.86 9.70 22.27 0.22 -3.64 16 17 C 0.63 32.46 3.14 87.66 0.28 32.73 16 18 O -0.56 -33.51 15.14 -3.08 -0.05 -33.55 16 19 C -0.13 -5.93 2.42 -53.67 -0.13 -6.06 16 20 C 0.16 6.73 6.28 42.55 0.27 7.00 16 21 C -0.17 -6.64 8.83 22.36 0.20 -6.44 16 22 C -0.08 -2.18 10.18 22.47 0.23 -1.95 16 23 C -0.17 -4.06 10.11 22.36 0.23 -3.83 16 24 C 0.09 2.40 11.18 84.67 0.95 3.35 16 25 N -0.51 -18.59 9.35 -183.89 -1.72 -20.31 16 26 C -0.13 -5.05 8.59 30.59 0.26 -4.79 16 27 C -0.11 -4.83 9.29 30.60 0.28 -4.55 16 28 H 0.26 14.82 8.32 -92.71 -0.77 14.04 16 29 H 0.08 2.91 7.98 -2.39 -0.02 2.89 16 30 H 0.08 2.68 6.03 -2.39 -0.01 2.66 16 31 H 0.11 3.66 8.06 -2.91 -0.02 3.64 16 32 H 0.14 3.18 8.06 -2.91 -0.02 3.16 16 33 H 0.15 2.83 8.06 -2.91 -0.02 2.81 16 34 H 0.14 3.16 8.06 -2.91 -0.02 3.13 16 35 H 0.12 3.90 8.06 -2.91 -0.02 3.88 16 36 H 0.11 4.68 6.50 -2.91 -0.02 4.66 16 37 H 0.16 3.40 8.06 -2.91 -0.02 3.38 16 38 H 0.17 2.46 8.06 -2.91 -0.02 2.44 16 39 H 0.19 3.55 8.06 -2.91 -0.02 3.52 16 40 H 0.11 3.51 8.14 -2.39 -0.02 3.49 16 41 H 0.11 3.93 5.92 -2.39 -0.01 3.92 16 42 H 0.11 5.31 6.08 -2.39 -0.01 5.30 16 43 H 0.10 4.01 7.59 -2.39 -0.02 3.99 16 Total: -1.00 -72.57 359.21 5.27 -67.30 By element: Atomic # 1 Polarization: 32.69 SS G_CDS: 1.02 Total: 33.71 kcal Atomic # 6 Polarization: -20.09 SS G_CDS: 5.17 Total: -14.92 kcal Atomic # 7 Polarization: -97.01 SS G_CDS: -2.90 Total: -99.91 kcal Atomic # 8 Polarization: -33.51 SS G_CDS: -0.05 Total: -33.55 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.38 kcal Total: -72.57 5.27 -67.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176805123.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.171 kcal (2) G-P(sol) polarization free energy of solvation -72.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.300 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds