Wall clock time and date at job start Tue Mar 31 2020 13:58:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86801 * 119.99837 * 2 1 4 4 H 1.48493 * 109.47128 * 244.97286 * 3 2 1 5 5 H 1.48503 * 109.46809 * 4.96906 * 3 2 1 6 6 H 1.48492 * 109.47463 * 124.96959 * 3 2 1 7 7 C 1.38945 * 120.00080 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99806 * 137.31156 * 7 2 1 9 9 N 1.37103 * 120.00320 * 317.30421 * 7 2 1 10 10 C 1.46492 * 120.00043 * 320.10359 * 9 7 2 11 11 C 1.50706 * 109.46977 * 267.97957 * 10 9 7 12 12 C 1.38228 * 119.99968 * 266.68965 * 11 10 9 13 13 C 1.38237 * 119.99847 * 179.76737 * 12 11 10 14 14 C 1.38233 * 119.99988 * 0.50300 * 13 12 11 15 15 C 1.38237 * 119.99793 * 359.74889 * 14 13 12 16 16 C 1.38230 * 120.00318 * 0.02562 * 15 14 13 17 17 C 1.34775 * 119.99397 * 140.09402 * 9 7 2 18 18 O 1.21296 * 119.99514 * 185.94793 * 17 9 7 19 19 C 1.50695 * 120.00616 * 5.94983 * 17 9 7 20 20 C 1.50693 * 115.55013 * 293.50801 * 19 17 9 21 21 C 1.38651 * 120.79065 * 129.50922 * 20 19 17 22 22 C 1.38207 * 119.16180 * 179.75415 * 21 20 19 23 23 N 1.31866 * 120.76511 * 0.53825 * 22 21 20 24 24 C 1.31869 * 121.72534 * 359.73309 * 23 22 21 25 25 C 1.38201 * 120.76340 * 359.97438 * 24 23 22 26 26 C 1.53005 * 117.49874 * 147.83659 * 19 17 9 27 27 C 1.53004 * 117.49626 * 79.17794 * 19 17 9 28 28 H 0.96999 * 120.00316 * 0.02562 * 1 2 3 29 29 H 1.08997 * 109.47370 * 27.97442 * 10 9 7 30 30 H 1.08998 * 109.47436 * 147.97994 * 10 9 7 31 31 H 1.08002 * 119.99932 * 359.97438 * 12 11 10 32 32 H 1.08005 * 119.99783 * 180.23297 * 13 12 11 33 33 H 1.07999 * 119.99821 * 179.72768 * 14 13 12 34 34 H 1.08001 * 119.99704 * 179.97438 * 15 14 13 35 35 H 1.08001 * 120.00253 * 179.97438 * 16 15 14 36 36 H 1.08010 * 120.41907 * 0.02562 * 21 20 19 37 37 H 1.08002 * 119.61814 * 180.24863 * 22 21 20 38 38 H 1.08004 * 119.61586 * 180.02562 * 24 23 22 39 39 H 1.08001 * 120.41715 * 179.97438 * 25 24 23 40 40 H 1.08998 * 117.49992 * 0.02562 * 26 19 17 41 41 H 1.09002 * 117.49671 * 145.02483 * 26 19 17 42 42 H 1.09005 * 117.49664 * 214.97668 * 27 19 17 43 43 H 1.08997 * 117.50307 * 359.97438 * 27 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.0085 1.7503 -1.2686 5 1 1.2875 2.7438 0.1213 6 1 3.1905 1.6453 1.1472 7 6 2.0089 -1.2033 0.0005 8 1 2.8743 -1.3274 -0.6336 9 7 1.5960 -2.2330 0.8061 10 6 1.1220 -1.9557 2.1642 11 6 2.2754 -2.0556 3.1290 12 6 2.5304 -3.2479 3.7802 13 6 3.5914 -3.3409 4.6616 14 6 4.3909 -2.2386 4.8995 15 6 4.1327 -1.0448 4.2521 16 6 3.0747 -0.9531 3.3673 17 6 1.6260 -3.5003 0.3484 18 8 1.1612 -4.3982 1.0184 19 6 2.2370 -3.8017 -0.9958 20 6 1.5039 -3.2359 -2.1846 21 6 2.1772 -2.5057 -3.1520 22 6 1.4724 -2.0066 -4.2310 23 7 0.1740 -2.2091 -4.3406 24 6 -0.4997 -2.8940 -3.4372 25 6 0.1389 -3.4283 -2.3342 26 6 2.9270 -5.1561 -1.1704 27 6 3.7630 -3.8772 -1.0772 28 1 -0.4850 0.8400 -0.0004 29 1 0.7010 -0.9511 2.2041 30 1 0.3561 -2.6817 2.4371 31 1 1.9028 -4.1077 3.5980 32 1 3.7929 -4.2736 5.1675 33 1 5.2171 -2.3101 5.5913 34 1 4.7571 -0.1835 4.4383 35 1 2.8726 -0.0203 2.8619 36 1 3.2398 -2.3328 -3.0656 37 1 1.9903 -1.4403 -4.9909 38 1 -1.5626 -3.0396 -3.5611 39 1 -0.4183 -3.9879 -1.5975 40 1 2.9387 -5.8293 -0.3132 41 1 2.8510 -5.6377 -2.1453 42 1 4.2366 -3.5179 -1.9909 43 1 4.3250 -3.7083 -0.1587 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001177609746.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:58:14 Heat of formation + Delta-G solvation = 64.218387 kcal Electronic energy + Delta-G solvation = -27600.592555 eV Core-core repulsion = 23997.884510 eV Total energy + Delta-G solvation = -3602.708045 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.05899 -39.01744 -38.20036 -36.07303 -34.79838 -32.12521 -31.34165 -30.75025 -30.57011 -30.39014 -26.21297 -25.15660 -23.86857 -23.04702 -22.02303 -21.86406 -21.53214 -20.46201 -18.86715 -17.46798 -16.57315 -16.08801 -15.67773 -15.22785 -14.98705 -14.79208 -14.70196 -14.57601 -14.43468 -14.03333 -13.39623 -13.35102 -13.09135 -12.98765 -12.91076 -12.26805 -12.13270 -12.01255 -11.65796 -11.39883 -11.26288 -11.09003 -11.06370 -10.76436 -10.61228 -10.46396 -10.36039 -10.24220 -9.96677 -9.11527 -8.95379 -8.81375 -8.51357 -8.46907 -8.43256 -8.17166 -7.68391 -6.60895 -4.02185 1.78489 1.81940 1.89500 1.90641 3.04492 3.18158 3.20825 3.64044 3.99599 4.15761 4.26264 4.48281 4.66686 4.82522 4.96715 5.00902 5.30276 5.34355 5.36919 5.46162 5.47426 5.58388 5.72314 5.74347 5.78779 5.87616 5.97623 5.98076 6.05022 6.19111 6.22743 6.26169 6.34051 6.42830 6.48469 6.50587 6.61546 6.70363 6.75748 6.93847 6.96384 7.00885 7.28764 7.31581 7.39872 7.50665 7.83199 8.27574 8.54797 8.99547 9.39662 9.85169 10.40249 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.012595 B = 0.005843 C = 0.004680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2222.652105 B = 4791.118754 C = 5980.926333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.807 5.807 2 C 0.075 3.925 3 Si 0.870 3.130 4 H -0.270 1.270 5 H -0.285 1.285 6 H -0.268 1.268 7 C -0.367 4.367 8 H 0.090 0.910 9 N -0.418 5.418 10 C 0.157 3.843 11 C -0.081 4.081 12 C -0.103 4.103 13 C -0.131 4.131 14 C -0.132 4.132 15 C -0.131 4.131 16 C -0.096 4.096 17 C 0.512 3.488 18 O -0.599 6.599 19 C -0.083 4.083 20 C 0.043 3.957 21 C -0.159 4.159 22 C 0.090 3.910 23 N -0.496 5.496 24 C 0.098 3.902 25 C -0.145 4.145 26 C -0.149 4.149 27 C -0.156 4.156 28 H 0.270 0.730 29 H 0.084 0.916 30 H 0.070 0.930 31 H 0.123 0.877 32 H 0.113 0.887 33 H 0.112 0.888 34 H 0.113 0.887 35 H 0.121 0.879 36 H 0.127 0.873 37 H 0.145 0.855 38 H 0.146 0.854 39 H 0.126 0.874 40 H 0.101 0.899 41 H 0.093 0.907 42 H 0.097 0.903 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.789 -3.181 0.695 6.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.437 5.437 2 C -0.137 4.137 3 Si 0.695 3.305 4 H -0.195 1.195 5 H -0.211 1.211 6 H -0.193 1.193 7 C -0.493 4.493 8 H 0.108 0.892 9 N -0.134 5.134 10 C 0.034 3.966 11 C -0.082 4.082 12 C -0.122 4.122 13 C -0.149 4.149 14 C -0.150 4.150 15 C -0.149 4.149 16 C -0.115 4.115 17 C 0.300 3.700 18 O -0.485 6.485 19 C -0.086 4.086 20 C 0.035 3.965 21 C -0.179 4.179 22 C -0.067 4.067 23 N -0.206 5.206 24 C -0.059 4.059 25 C -0.165 4.165 26 C -0.187 4.187 27 C -0.194 4.194 28 H 0.080 0.920 29 H 0.102 0.898 30 H 0.088 0.912 31 H 0.141 0.859 32 H 0.131 0.869 33 H 0.130 0.870 34 H 0.131 0.869 35 H 0.139 0.861 36 H 0.145 0.855 37 H 0.163 0.837 38 H 0.164 0.836 39 H 0.144 0.856 40 H 0.120 0.880 41 H 0.112 0.888 42 H 0.116 0.884 43 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 4.877 -3.116 0.301 5.796 hybrid contribution 0.929 0.957 0.791 1.551 sum 5.806 -2.159 1.093 6.290 Atomic orbital electron populations 1.70373 1.07042 1.28510 1.37783 1.25105 0.93895 0.99820 0.94911 0.86925 0.80971 0.82917 0.79721 1.19537 1.21057 1.19294 1.18930 1.12481 0.91807 1.26039 0.89238 1.43199 1.56208 1.04763 1.09215 1.20210 0.92463 1.02323 0.81608 1.20506 0.98270 0.93214 0.96224 1.21218 0.97457 0.97609 0.95871 1.21048 0.96249 0.98166 0.99465 1.20991 0.99805 0.93545 1.00673 1.21057 0.98208 0.97556 0.98050 1.21151 0.94638 0.98941 0.96733 1.19137 0.81970 0.83713 0.85160 1.90517 1.51364 1.46805 1.59801 1.19787 0.94427 1.00817 0.93563 1.18928 0.93113 0.92892 0.91602 1.21831 1.01248 0.99324 0.95456 1.22468 0.90226 0.97297 0.96660 1.67536 1.08953 1.14439 1.29675 1.22468 0.99508 0.93549 0.90338 1.21809 0.94688 1.01283 0.98755 1.23007 1.02220 0.90411 1.03015 1.22989 0.92123 1.00962 1.03301 0.91967 0.89782 0.91200 0.85868 0.86872 0.87010 0.86860 0.86116 0.85490 0.83720 0.83630 0.85588 0.88011 0.88819 0.88429 0.88519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -20.27 13.23 55.50 0.73 -19.54 16 2 C 0.08 1.79 4.25 -17.47 -0.07 1.72 16 3 Si 0.87 18.43 29.69 -169.99 -5.05 13.38 16 4 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 5 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 6 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 7 C -0.37 -8.63 7.58 -14.93 -0.11 -8.75 16 8 H 0.09 2.12 6.89 -52.49 -0.36 1.76 16 9 N -0.42 -9.67 2.53 -116.10 -0.29 -9.97 16 10 C 0.16 3.48 5.32 -5.19 -0.03 3.46 16 11 C -0.08 -1.60 5.45 -104.62 -0.57 -2.17 16 12 C -0.10 -1.90 9.69 -39.59 -0.38 -2.28 16 13 C -0.13 -2.08 10.05 -39.58 -0.40 -2.47 16 14 C -0.13 -1.97 10.05 -39.58 -0.40 -2.37 16 15 C -0.13 -2.10 10.05 -39.58 -0.40 -2.49 16 16 C -0.10 -1.79 9.71 -39.58 -0.38 -2.18 16 17 C 0.51 11.72 6.56 -10.99 -0.07 11.65 16 18 O -0.60 -14.81 16.22 5.54 0.09 -14.72 16 19 C -0.08 -1.61 1.24 -156.81 -0.19 -1.81 16 20 C 0.04 0.83 4.15 -104.32 -0.43 0.40 16 21 C -0.16 -2.79 9.26 -39.44 -0.37 -3.15 16 22 C 0.09 1.55 11.18 -17.55 -0.20 1.35 16 23 N -0.50 -9.27 10.36 -13.25 -0.14 -9.41 16 24 C 0.10 1.79 11.18 -17.55 -0.20 1.59 16 25 C -0.15 -2.85 9.51 -39.44 -0.38 -3.22 16 26 C -0.15 -2.45 9.76 -26.69 -0.26 -2.71 16 27 C -0.16 -2.58 9.05 -26.69 -0.24 -2.82 16 28 H 0.27 6.50 8.31 -40.82 -0.34 6.16 16 29 H 0.08 1.93 6.53 -51.93 -0.34 1.59 16 30 H 0.07 1.59 7.33 -51.93 -0.38 1.21 16 31 H 0.12 2.35 7.97 -52.49 -0.42 1.93 16 32 H 0.11 1.50 8.06 -52.48 -0.42 1.08 16 33 H 0.11 1.34 8.06 -52.49 -0.42 0.92 16 34 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 35 H 0.12 2.33 8.06 -52.49 -0.42 1.91 16 36 H 0.13 1.96 6.40 -52.48 -0.34 1.63 16 37 H 0.15 2.03 8.06 -52.49 -0.42 1.61 16 38 H 0.15 2.27 8.06 -52.48 -0.42 1.84 16 39 H 0.13 2.52 8.03 -52.49 -0.42 2.10 16 40 H 0.10 1.72 8.01 -51.93 -0.42 1.31 16 41 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 42 H 0.10 1.39 6.48 -51.93 -0.34 1.06 16 43 H 0.10 1.65 8.14 -51.93 -0.42 1.23 16 LS Contribution 367.98 15.07 5.55 5.55 Total: -1.00 -28.07 367.98 -9.72 -37.79 By element: Atomic # 1 Polarization: 18.70 SS G_CDS: -5.53 Total: 13.17 kcal Atomic # 6 Polarization: -11.17 SS G_CDS: -5.08 Total: -16.25 kcal Atomic # 7 Polarization: -39.22 SS G_CDS: 0.30 Total: -38.91 kcal Atomic # 8 Polarization: -14.81 SS G_CDS: 0.09 Total: -14.72 kcal Atomic # 14 Polarization: 18.43 SS G_CDS: -5.05 Total: 13.38 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -28.07 -9.72 -37.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177609746.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.008 kcal (2) G-P(sol) polarization free energy of solvation -28.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.789 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds