Wall clock time and date at job start Tue Mar 31 2020 13:58:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86801 * 119.99837 * 2 1 4 4 H 1.48493 * 109.47128 * 244.97286 * 3 2 1 5 5 H 1.48503 * 109.46809 * 4.96906 * 3 2 1 6 6 H 1.48492 * 109.47463 * 124.96959 * 3 2 1 7 7 C 1.38945 * 120.00080 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99806 * 137.31156 * 7 2 1 9 9 N 1.37103 * 120.00320 * 317.30421 * 7 2 1 10 10 C 1.46492 * 120.00043 * 320.10359 * 9 7 2 11 11 C 1.50706 * 109.46977 * 267.97957 * 10 9 7 12 12 C 1.38228 * 119.99968 * 266.68965 * 11 10 9 13 13 C 1.38237 * 119.99847 * 179.76737 * 12 11 10 14 14 C 1.38233 * 119.99988 * 0.50300 * 13 12 11 15 15 C 1.38237 * 119.99793 * 359.74889 * 14 13 12 16 16 C 1.38230 * 120.00318 * 0.02562 * 15 14 13 17 17 C 1.34775 * 119.99397 * 140.09402 * 9 7 2 18 18 O 1.21296 * 119.99514 * 185.94793 * 17 9 7 19 19 C 1.50695 * 120.00616 * 5.94983 * 17 9 7 20 20 C 1.50693 * 115.55013 * 293.50801 * 19 17 9 21 21 C 1.38651 * 120.79065 * 129.50922 * 20 19 17 22 22 C 1.38207 * 119.16180 * 179.75415 * 21 20 19 23 23 N 1.31866 * 120.76511 * 0.53825 * 22 21 20 24 24 C 1.31869 * 121.72534 * 359.73309 * 23 22 21 25 25 C 1.38201 * 120.76340 * 359.97438 * 24 23 22 26 26 C 1.53005 * 117.49874 * 147.83659 * 19 17 9 27 27 C 1.53004 * 117.49626 * 79.17794 * 19 17 9 28 28 H 0.96999 * 120.00316 * 0.02562 * 1 2 3 29 29 H 1.08997 * 109.47370 * 27.97442 * 10 9 7 30 30 H 1.08998 * 109.47436 * 147.97994 * 10 9 7 31 31 H 1.08002 * 119.99932 * 359.97438 * 12 11 10 32 32 H 1.08005 * 119.99783 * 180.23297 * 13 12 11 33 33 H 1.07999 * 119.99821 * 179.72768 * 14 13 12 34 34 H 1.08001 * 119.99704 * 179.97438 * 15 14 13 35 35 H 1.08001 * 120.00253 * 179.97438 * 16 15 14 36 36 H 1.08010 * 120.41907 * 0.02562 * 21 20 19 37 37 H 1.08002 * 119.61814 * 180.24863 * 22 21 20 38 38 H 1.08004 * 119.61586 * 180.02562 * 24 23 22 39 39 H 1.08001 * 120.41715 * 179.97438 * 25 24 23 40 40 H 1.08998 * 117.49992 * 0.02562 * 26 19 17 41 41 H 1.09002 * 117.49671 * 145.02483 * 26 19 17 42 42 H 1.09005 * 117.49664 * 214.97668 * 27 19 17 43 43 H 1.08997 * 117.50307 * 359.97438 * 27 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.0085 1.7503 -1.2686 5 1 1.2875 2.7438 0.1213 6 1 3.1905 1.6453 1.1472 7 6 2.0089 -1.2033 0.0005 8 1 2.8743 -1.3274 -0.6336 9 7 1.5960 -2.2330 0.8061 10 6 1.1220 -1.9557 2.1642 11 6 2.2754 -2.0556 3.1290 12 6 2.5304 -3.2479 3.7802 13 6 3.5914 -3.3409 4.6616 14 6 4.3909 -2.2386 4.8995 15 6 4.1327 -1.0448 4.2521 16 6 3.0747 -0.9531 3.3673 17 6 1.6260 -3.5003 0.3484 18 8 1.1612 -4.3982 1.0184 19 6 2.2370 -3.8017 -0.9958 20 6 1.5039 -3.2359 -2.1846 21 6 2.1772 -2.5057 -3.1520 22 6 1.4724 -2.0066 -4.2310 23 7 0.1740 -2.2091 -4.3406 24 6 -0.4997 -2.8940 -3.4372 25 6 0.1389 -3.4283 -2.3342 26 6 2.9270 -5.1561 -1.1704 27 6 3.7630 -3.8772 -1.0772 28 1 -0.4850 0.8400 -0.0004 29 1 0.7010 -0.9511 2.2041 30 1 0.3561 -2.6817 2.4371 31 1 1.9028 -4.1077 3.5980 32 1 3.7929 -4.2736 5.1675 33 1 5.2171 -2.3101 5.5913 34 1 4.7571 -0.1835 4.4383 35 1 2.8726 -0.0203 2.8619 36 1 3.2398 -2.3328 -3.0656 37 1 1.9903 -1.4403 -4.9909 38 1 -1.5626 -3.0396 -3.5611 39 1 -0.4183 -3.9879 -1.5975 40 1 2.9387 -5.8293 -0.3132 41 1 2.8510 -5.6377 -2.1453 42 1 4.2366 -3.5179 -1.9909 43 1 4.3250 -3.7083 -0.1587 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001177609746.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:58:13 Heat of formation + Delta-G solvation = 51.678124 kcal Electronic energy + Delta-G solvation = -27601.136342 eV Core-core repulsion = 23997.884510 eV Total energy + Delta-G solvation = -3603.251831 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.56932 -40.50355 -39.66224 -37.57641 -36.59608 -33.87374 -32.76320 -32.29703 -31.96430 -31.72839 -27.80867 -26.93098 -25.37194 -24.44077 -23.37187 -23.27953 -22.94791 -21.93592 -20.59076 -19.03597 -18.09071 -17.54940 -17.17003 -16.75714 -16.72162 -16.30500 -16.19713 -16.11626 -15.84643 -15.52845 -14.92177 -14.87919 -14.53677 -14.37428 -14.25368 -13.88643 -13.70235 -13.44809 -13.26248 -13.14247 -12.74783 -12.61880 -12.42240 -12.38914 -12.25618 -11.98064 -11.76516 -11.68498 -11.49036 -10.86881 -10.48422 -10.30823 -10.06362 -9.90899 -9.77543 -9.61654 -9.49577 -8.43312 -5.88064 0.37772 0.45025 0.47758 0.54843 1.34597 1.46227 1.51860 1.93603 2.29944 2.65110 2.80295 2.92763 3.08185 3.27347 3.55097 3.68967 3.94169 3.98452 4.03969 4.12619 4.13061 4.21122 4.29999 4.33902 4.37956 4.41552 4.46301 4.67690 4.68088 4.76909 4.84473 4.88020 4.92592 4.95613 4.98782 5.15681 5.20860 5.21523 5.27878 5.53363 5.58415 5.62544 5.63027 5.84722 5.92146 6.04359 6.17828 6.41926 7.14269 7.16143 7.60265 8.06363 8.58976 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.012595 B = 0.005843 C = 0.004680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2222.652105 B = 4791.118754 C = 5980.926333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.845 5.845 2 C 0.043 3.957 3 Si 0.924 3.076 4 H -0.263 1.263 5 H -0.292 1.292 6 H -0.259 1.259 7 C -0.363 4.363 8 H 0.092 0.908 9 N -0.424 5.424 10 C 0.163 3.837 11 C -0.100 4.100 12 C -0.120 4.120 13 C -0.126 4.126 14 C -0.119 4.119 15 C -0.125 4.125 16 C -0.112 4.112 17 C 0.501 3.499 18 O -0.631 6.631 19 C -0.112 4.112 20 C 0.034 3.966 21 C -0.161 4.161 22 C 0.090 3.910 23 N -0.511 5.511 24 C 0.093 3.907 25 C -0.169 4.169 26 C -0.134 4.134 27 C -0.136 4.136 28 H 0.269 0.731 29 H 0.066 0.934 30 H 0.045 0.955 31 H 0.104 0.896 32 H 0.143 0.857 33 H 0.155 0.845 34 H 0.144 0.856 35 H 0.108 0.892 36 H 0.152 0.848 37 H 0.181 0.819 38 H 0.164 0.836 39 H 0.106 0.894 40 H 0.092 0.908 41 H 0.118 0.882 42 H 0.128 0.872 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.245 -2.538 0.582 9.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.478 5.478 2 C -0.167 4.167 3 Si 0.748 3.252 4 H -0.188 1.188 5 H -0.218 1.218 6 H -0.184 1.184 7 C -0.489 4.489 8 H 0.109 0.891 9 N -0.140 5.140 10 C 0.040 3.960 11 C -0.102 4.102 12 C -0.139 4.139 13 C -0.143 4.143 14 C -0.137 4.137 15 C -0.143 4.143 16 C -0.131 4.131 17 C 0.290 3.710 18 O -0.519 6.519 19 C -0.115 4.115 20 C 0.026 3.974 21 C -0.180 4.180 22 C -0.066 4.066 23 N -0.220 5.220 24 C -0.063 4.063 25 C -0.190 4.190 26 C -0.172 4.172 27 C -0.173 4.173 28 H 0.079 0.921 29 H 0.084 0.916 30 H 0.063 0.937 31 H 0.122 0.878 32 H 0.161 0.839 33 H 0.172 0.828 34 H 0.162 0.838 35 H 0.126 0.874 36 H 0.170 0.830 37 H 0.198 0.802 38 H 0.181 0.819 39 H 0.125 0.875 40 H 0.110 0.890 41 H 0.136 0.864 42 H 0.146 0.854 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 8.350 -2.468 0.189 8.709 hybrid contribution -0.158 0.697 0.895 1.145 sum 8.191 -1.770 1.084 8.450 Atomic orbital electron populations 1.70438 1.08440 1.28918 1.39965 1.25729 0.94203 1.02119 0.94601 0.86074 0.79703 0.79289 0.80111 1.18803 1.21756 1.18359 1.19010 1.11971 0.91833 1.26099 0.89074 1.43393 1.56019 1.05040 1.09562 1.20026 0.93284 1.00251 0.82450 1.20277 0.98262 0.94662 0.96950 1.21153 0.98810 0.96532 0.97355 1.21378 0.94835 0.99976 0.98153 1.21450 0.99976 0.92242 1.00026 1.21400 0.97110 0.99219 0.96581 1.21120 0.95917 0.97891 0.98171 1.19798 0.81577 0.83272 0.86318 1.90476 1.52690 1.47564 1.61153 1.19738 0.96357 1.03729 0.91673 1.19039 0.93005 0.93338 0.92014 1.22097 1.02476 0.98496 0.94925 1.23089 0.89848 0.96554 0.97154 1.67619 1.09905 1.14770 1.29755 1.22742 1.00494 0.93131 0.89891 1.21818 0.95399 1.02519 0.99220 1.23071 1.00606 0.89637 1.03873 1.23085 0.89859 1.00133 1.04262 0.92146 0.91555 0.93667 0.87783 0.83950 0.82785 0.83832 0.87428 0.83011 0.80223 0.81860 0.87532 0.88984 0.86377 0.85449 0.89282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -44.01 13.23 21.66 0.29 -43.72 16 2 C 0.04 2.07 4.25 84.92 0.36 2.44 16 3 Si 0.92 37.69 29.69 68.60 2.04 39.72 16 4 H -0.26 -10.40 7.11 99.48 0.71 -9.70 16 5 H -0.29 -12.12 7.11 99.48 0.71 -11.41 16 6 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 7 C -0.36 -17.30 7.58 84.04 0.64 -16.66 16 8 H 0.09 4.26 6.89 -2.91 -0.02 4.24 16 9 N -0.42 -20.46 2.53 -639.62 -1.62 -22.08 16 10 C 0.16 7.72 5.32 85.64 0.46 8.18 16 11 C -0.10 -4.10 5.45 -19.86 -0.11 -4.21 16 12 C -0.12 -4.49 9.69 22.27 0.22 -4.27 16 13 C -0.13 -3.69 10.05 22.27 0.22 -3.46 16 14 C -0.12 -3.08 10.05 22.27 0.22 -2.85 16 15 C -0.13 -3.64 10.05 22.27 0.22 -3.42 16 16 C -0.11 -4.14 9.71 22.27 0.22 -3.93 16 17 C 0.50 23.85 6.56 87.66 0.58 24.43 16 18 O -0.63 -33.05 16.22 -3.08 -0.05 -33.10 16 19 C -0.11 -4.36 1.24 -53.67 -0.07 -4.43 16 20 C 0.03 1.32 4.15 -19.67 -0.08 1.24 16 21 C -0.16 -5.31 9.26 22.36 0.21 -5.10 16 22 C 0.09 2.89 11.18 84.68 0.95 3.84 16 23 N -0.51 -18.53 10.36 -195.84 -2.03 -20.56 16 24 C 0.09 3.45 11.18 84.68 0.95 4.39 16 25 C -0.17 -6.84 9.51 22.36 0.21 -6.63 16 26 C -0.13 -4.29 9.76 30.62 0.30 -3.99 16 27 C -0.14 -4.24 9.05 30.62 0.28 -3.96 16 28 H 0.27 13.41 8.31 -92.71 -0.77 12.64 16 29 H 0.07 3.28 6.53 -2.39 -0.02 3.27 16 30 H 0.04 2.27 7.33 -2.39 -0.02 2.25 16 31 H 0.10 4.22 7.97 -2.91 -0.02 4.20 16 32 H 0.14 3.31 8.06 -2.91 -0.02 3.28 16 33 H 0.15 2.76 8.06 -2.91 -0.02 2.74 16 34 H 0.14 3.29 8.06 -2.91 -0.02 3.27 16 35 H 0.11 4.18 8.06 -2.91 -0.02 4.15 16 36 H 0.15 4.16 6.40 -2.91 -0.02 4.14 16 37 H 0.18 4.38 8.06 -2.91 -0.02 4.36 16 38 H 0.16 5.18 8.06 -2.91 -0.02 5.16 16 39 H 0.11 4.59 8.03 -2.91 -0.02 4.57 16 40 H 0.09 3.11 8.01 -2.39 -0.02 3.09 16 41 H 0.12 3.16 8.14 -2.39 -0.02 3.14 16 42 H 0.13 3.17 6.48 -2.38 -0.02 3.15 16 43 H 0.09 2.92 8.14 -2.39 -0.02 2.90 16 Total: -1.00 -63.50 367.98 5.41 -58.10 By element: Atomic # 1 Polarization: 39.02 SS G_CDS: 1.02 Total: 40.04 kcal Atomic # 6 Polarization: -24.17 SS G_CDS: 5.77 Total: -18.40 kcal Atomic # 7 Polarization: -83.00 SS G_CDS: -3.36 Total: -86.36 kcal Atomic # 8 Polarization: -33.05 SS G_CDS: -0.05 Total: -33.10 kcal Atomic # 14 Polarization: 37.69 SS G_CDS: 2.04 Total: 39.72 kcal Total: -63.50 5.41 -58.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177609746.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.773 kcal (2) G-P(sol) polarization free energy of solvation -63.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.095 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds