Wall clock time and date at job start Tue Mar 31 2020 13:20:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30824 * 1 3 3 Si 1.86800 * 120.00189 * 2 1 4 4 H 1.48501 * 109.47183 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47171 * 300.00064 * 3 2 1 6 6 H 1.48496 * 109.47369 * 59.99952 * 3 2 1 7 7 C 1.39937 * 119.99978 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99904 * 187.24755 * 7 2 1 9 9 C 1.41402 * 119.99537 * 7.25361 * 7 2 1 10 10 C 1.40772 * 120.21402 * 32.06073 * 9 7 2 11 11 C 1.37642 * 119.88811 * 179.97438 * 10 9 7 12 12 C 1.38532 * 120.32270 * 0.02562 * 11 10 9 13 13 C 1.39256 * 120.42745 * 359.95880 * 12 11 10 14 14 N 1.39930 * 119.94873 * 180.02562 * 13 12 11 15 15 C 1.34780 * 120.00424 * 144.53191 * 14 13 12 16 16 O 1.21284 * 119.99546 * 5.26736 * 15 14 13 17 17 C 1.50696 * 120.00073 * 185.26815 * 15 14 13 18 18 N 1.46903 * 109.46845 * 183.24879 * 17 15 14 19 19 C 1.47909 * 110.99930 * 292.78615 * 18 17 15 20 20 C 1.54602 * 102.62289 * 265.52771 * 19 18 17 21 21 C 1.51574 * 102.84283 * 334.49432 * 20 19 18 22 22 C 1.37920 * 131.56557 * 196.03142 * 21 20 19 23 23 C 1.38299 * 120.08405 * 179.58217 * 22 21 20 24 24 C 1.38310 * 119.88230 * 359.94246 * 23 22 21 25 25 C 1.37905 * 120.26531 * 0.15607 * 24 23 22 26 26 C 1.38964 * 107.95416 * 15.85172 * 21 20 19 27 27 C 1.38282 * 120.09998 * 0.27320 * 13 12 11 28 28 H 0.97003 * 119.99883 * 359.97438 * 1 2 3 29 29 H 1.08005 * 120.05805 * 0.02562 * 10 9 7 30 30 H 1.08000 * 119.84471 * 180.02562 * 11 10 9 31 31 H 1.08005 * 119.78795 * 179.97438 * 12 11 10 32 32 H 0.97001 * 119.99902 * 324.52946 * 14 13 12 33 33 H 1.09005 * 109.47211 * 63.25295 * 17 15 14 34 34 H 1.08991 * 109.47490 * 303.25216 * 17 15 14 35 35 H 1.09011 * 110.77611 * 147.24666 * 19 18 17 36 36 H 1.08997 * 110.78166 * 23.81546 * 19 18 17 37 37 H 1.09000 * 110.73587 * 216.15913 * 20 19 18 38 38 H 1.08991 * 110.73783 * 92.83231 * 20 19 18 39 39 H 1.08000 * 119.95629 * 359.59612 * 22 21 20 40 40 H 1.07994 * 120.06105 * 179.97438 * 23 22 21 41 41 H 1.08001 * 119.86681 * 180.18017 * 24 23 22 42 42 H 1.08000 * 119.90306 * 179.75567 * 25 24 23 43 43 H 1.08003 * 120.15485 * 179.72884 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.7023 1.3463 -0.0006 5 1 1.8836 2.3964 -1.2125 6 1 1.8836 2.3964 1.2124 7 6 2.0079 -1.2119 0.0005 8 1 3.0814 -1.2156 0.1185 9 6 1.3093 -2.4316 -0.1535 10 6 0.1407 -2.4846 -0.9366 11 6 -0.5338 -3.6755 -1.0825 12 6 -0.0686 -4.8233 -0.4618 13 6 1.0861 -4.7861 0.3156 14 7 1.5473 -5.9516 0.9377 15 6 2.8714 -6.1718 1.0595 16 8 3.6621 -5.3182 0.7171 17 6 3.3694 -7.4785 1.6211 18 7 4.8345 -7.4412 1.7227 19 6 5.4579 -7.4020 0.3820 20 6 5.7471 -8.8943 0.1001 21 6 5.8635 -9.4837 1.4917 22 6 6.3865 -10.6792 1.9384 23 6 6.3777 -10.9784 3.2886 24 6 5.8445 -10.0759 4.1909 25 6 5.3185 -8.8800 3.7494 26 6 5.3203 -8.5727 2.3896 27 6 1.7749 -3.5981 0.4780 28 1 -0.4850 0.8401 0.0004 29 1 -0.2256 -1.5924 -1.4228 30 1 -1.4301 -3.7155 -1.6838 31 1 -0.6049 -5.7531 -0.5817 32 1 0.9141 -6.6011 1.2812 33 1 3.0716 -8.2942 0.9622 34 1 2.9405 -7.6358 2.6106 35 1 6.3832 -6.8260 0.4025 36 1 4.7649 -6.9964 -0.3551 37 1 6.6826 -9.0095 -0.4473 38 1 4.9211 -9.3513 -0.4446 39 1 6.8036 -11.3825 1.2328 40 1 6.7869 -11.9147 3.6379 41 1 5.8404 -10.3085 5.2456 42 1 4.9000 -8.1813 4.4586 43 1 2.6681 -3.5673 1.0843 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001180288661.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:20:52 Heat of formation + Delta-G solvation = 35.696749 kcal Electronic energy + Delta-G solvation = -25700.247895 eV Core-core repulsion = 22096.303059 eV Total energy + Delta-G solvation = -3603.944836 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.10148 -39.49519 -37.38183 -36.53346 -34.39607 -33.02158 -32.56215 -30.38532 -29.78269 -29.06980 -28.41639 -26.34345 -25.24562 -23.19271 -22.00392 -21.41840 -21.06952 -20.65792 -19.53167 -17.73888 -17.04608 -16.59357 -16.33137 -15.63778 -15.44899 -15.29176 -14.91555 -14.80536 -14.57477 -13.93456 -13.76770 -13.54629 -13.23539 -13.00874 -12.83506 -12.69866 -12.49141 -12.16786 -12.04589 -11.68576 -11.60706 -11.32178 -11.13754 -11.11473 -11.02982 -10.89896 -10.41844 -10.21451 -9.76074 -9.56908 -9.33714 -9.07504 -9.01000 -8.83719 -8.04132 -7.38085 -6.92255 -6.61110 -4.32973 1.08943 1.18011 2.58925 2.85328 3.13367 3.18291 3.19449 3.21498 3.34029 3.55289 3.79462 4.02217 4.41768 4.59640 4.71513 4.79935 4.83245 4.91660 4.99018 5.09500 5.16514 5.23095 5.29497 5.41435 5.59570 5.70781 5.75226 5.78177 5.99513 6.16558 6.23254 6.24953 6.30151 6.37431 6.54649 6.70605 6.75716 7.02226 7.05292 7.11872 7.12038 7.30394 7.57377 7.74647 7.96165 8.14609 8.17030 8.27816 8.66513 8.73898 8.98068 9.00688 10.32351 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.020695 B = 0.002620 C = 0.002476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.669304 B =10684.785614 C =11305.116238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.809 5.809 2 C 0.072 3.928 3 Si 0.911 3.089 4 H -0.261 1.261 5 H -0.274 1.274 6 H -0.275 1.275 7 C -0.460 4.460 8 H 0.078 0.922 9 C 0.117 3.883 10 C -0.161 4.161 11 C -0.098 4.098 12 C -0.254 4.254 13 C 0.144 3.856 14 N -0.669 5.669 15 C 0.503 3.497 16 O -0.498 6.498 17 C 0.042 3.958 18 N -0.474 5.474 19 C 0.059 3.941 20 C -0.115 4.115 21 C -0.137 4.137 22 C -0.091 4.091 23 C -0.135 4.135 24 C -0.106 4.106 25 C -0.111 4.111 26 C 0.093 3.907 27 C -0.201 4.201 28 H 0.277 0.723 29 H 0.120 0.880 30 H 0.092 0.908 31 H 0.089 0.911 32 H 0.398 0.602 33 H 0.070 0.930 34 H 0.104 0.896 35 H 0.092 0.908 36 H 0.094 0.906 37 H 0.087 0.913 38 H 0.080 0.920 39 H 0.119 0.881 40 H 0.123 0.877 41 H 0.126 0.874 42 H 0.125 0.875 43 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.258 -19.384 4.262 21.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.435 5.435 2 C -0.143 4.143 3 Si 0.736 3.264 4 H -0.185 1.185 5 H -0.199 1.199 6 H -0.201 1.201 7 C -0.490 4.490 8 H 0.096 0.904 9 C 0.114 3.886 10 C -0.180 4.180 11 C -0.117 4.117 12 C -0.275 4.275 13 C 0.052 3.948 14 N -0.313 5.313 15 C 0.288 3.712 16 O -0.371 6.371 17 C -0.087 4.087 18 N -0.191 5.191 19 C -0.067 4.067 20 C -0.154 4.154 21 C -0.140 4.140 22 C -0.110 4.110 23 C -0.153 4.153 24 C -0.124 4.124 25 C -0.131 4.131 26 C -0.003 4.003 27 C -0.222 4.222 28 H 0.088 0.912 29 H 0.137 0.863 30 H 0.110 0.890 31 H 0.107 0.893 32 H 0.231 0.769 33 H 0.088 0.912 34 H 0.122 0.878 35 H 0.111 0.889 36 H 0.112 0.888 37 H 0.105 0.895 38 H 0.098 0.902 39 H 0.137 0.863 40 H 0.141 0.859 41 H 0.144 0.856 42 H 0.143 0.857 43 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 7.762 -18.095 4.272 20.148 hybrid contribution -0.292 -0.259 -0.107 0.405 sum 7.470 -18.354 4.165 20.249 Atomic orbital electron populations 1.69792 1.07319 1.28704 1.37725 1.25865 0.94865 1.01106 0.92503 0.86212 0.80871 0.80955 0.78362 1.18474 1.19904 1.20068 1.19584 0.95272 0.90064 1.44127 0.90426 1.17552 0.91307 0.91787 0.87929 1.21399 0.98598 0.96374 1.01671 1.20491 0.98526 0.93177 0.99482 1.20092 1.01010 0.97856 1.08557 1.17452 0.96095 0.84599 0.96617 1.43379 1.06597 1.22423 1.58937 1.20326 0.82620 0.88769 0.79479 1.90759 1.54620 1.44820 1.46896 1.22050 0.87933 0.95869 1.02889 1.59698 1.04516 1.36921 1.17943 1.23185 1.01126 0.94176 0.88260 1.21802 1.03005 0.96649 0.93903 1.21086 1.02490 0.94647 0.95775 1.20398 0.99307 0.95546 0.95707 1.21044 1.01430 0.99889 0.92950 1.20927 0.98268 0.93509 0.99712 1.20563 1.01953 0.97532 0.93047 1.19602 0.98190 0.88900 0.93598 1.21248 1.03595 0.91421 1.05960 0.91196 0.86264 0.89008 0.89299 0.76881 0.91239 0.87812 0.88929 0.88804 0.89471 0.90164 0.86272 0.85872 0.85621 0.85676 0.86880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.43 10.89 55.55 0.60 -20.83 16 2 C 0.07 1.87 5.29 -17.34 -0.09 1.78 16 3 Si 0.91 19.54 29.57 -169.99 -5.03 14.52 16 4 H -0.26 -5.60 7.11 56.52 0.40 -5.20 16 5 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 6 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 7 C -0.46 -12.77 9.05 -37.74 -0.34 -13.11 16 8 H 0.08 2.14 7.86 -52.49 -0.41 1.73 16 9 C 0.12 3.23 5.52 -106.85 -0.59 2.64 16 10 C -0.16 -4.22 8.63 -38.84 -0.34 -4.56 16 11 C -0.10 -2.27 10.02 -39.69 -0.40 -2.67 16 12 C -0.25 -5.50 9.97 -39.09 -0.39 -5.89 16 13 C 0.14 3.21 6.29 -83.77 -0.53 2.68 16 14 N -0.67 -11.54 5.33 -9.91 -0.05 -11.60 16 15 C 0.50 8.66 7.16 -10.99 -0.08 8.58 16 16 O -0.50 -10.76 12.27 5.55 0.07 -10.69 16 17 C 0.04 0.53 5.25 -4.98 -0.03 0.50 16 18 N -0.47 -6.55 4.81 -170.37 -0.82 -7.37 16 19 C 0.06 0.77 6.10 -2.43 -0.01 0.76 16 20 C -0.12 -1.18 6.93 -26.61 -0.18 -1.37 16 21 C -0.14 -1.51 6.23 -104.04 -0.65 -2.16 16 22 C -0.09 -0.85 10.03 -39.68 -0.40 -1.25 16 23 C -0.13 -1.14 10.06 -39.53 -0.40 -1.53 16 24 C -0.11 -0.93 10.02 -39.68 -0.40 -1.33 16 25 C -0.11 -1.19 10.07 -39.27 -0.40 -1.59 16 26 C 0.09 1.14 5.56 -83.40 -0.46 0.68 16 27 C -0.20 -5.20 8.44 -38.68 -0.33 -5.53 16 28 H 0.28 6.69 8.30 -40.82 -0.34 6.35 16 29 H 0.12 3.23 6.35 -52.48 -0.33 2.90 16 30 H 0.09 1.88 8.06 -52.49 -0.42 1.45 16 31 H 0.09 1.65 8.06 -52.48 -0.42 1.22 16 32 H 0.40 5.23 8.82 -40.82 -0.36 4.87 16 33 H 0.07 0.75 8.07 -51.93 -0.42 0.33 16 34 H 0.10 1.12 8.09 -51.93 -0.42 0.70 16 35 H 0.09 1.24 8.14 -51.92 -0.42 0.82 16 36 H 0.09 1.35 6.40 -51.93 -0.33 1.02 16 37 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 38 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 40 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 41 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 42 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 43 H 0.11 3.05 6.24 -52.48 -0.33 2.73 16 LS Contribution 357.70 15.07 5.39 5.39 Total: -1.00 -31.69 357.70 -11.38 -43.07 By element: Atomic # 1 Polarization: 16.41 SS G_CDS: -5.54 Total: 10.86 kcal Atomic # 6 Polarization: -17.35 SS G_CDS: -6.00 Total: -23.35 kcal Atomic # 7 Polarization: -39.53 SS G_CDS: -0.27 Total: -39.79 kcal Atomic # 8 Polarization: -10.76 SS G_CDS: 0.07 Total: -10.69 kcal Atomic # 14 Polarization: 19.54 SS G_CDS: -5.03 Total: 14.52 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -31.69 -11.38 -43.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180288661.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.767 kcal (2) G-P(sol) polarization free energy of solvation -31.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.070 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds