Wall clock time and date at job start Tue Mar 31 2020 13:20:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30824 * 1 3 3 Si 1.86800 * 120.00189 * 2 1 4 4 H 1.48501 * 109.47183 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47171 * 300.00064 * 3 2 1 6 6 H 1.48496 * 109.47369 * 59.99952 * 3 2 1 7 7 C 1.39937 * 119.99978 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99904 * 187.24755 * 7 2 1 9 9 C 1.41402 * 119.99537 * 7.25361 * 7 2 1 10 10 C 1.40772 * 120.21402 * 32.06073 * 9 7 2 11 11 C 1.37642 * 119.88811 * 179.97438 * 10 9 7 12 12 C 1.38532 * 120.32270 * 0.02562 * 11 10 9 13 13 C 1.39256 * 120.42745 * 359.95880 * 12 11 10 14 14 N 1.39930 * 119.94873 * 180.02562 * 13 12 11 15 15 C 1.34780 * 120.00424 * 144.53191 * 14 13 12 16 16 O 1.21284 * 119.99546 * 5.26736 * 15 14 13 17 17 C 1.50696 * 120.00073 * 185.26815 * 15 14 13 18 18 N 1.46903 * 109.46845 * 183.24879 * 17 15 14 19 19 C 1.47909 * 110.99930 * 292.78615 * 18 17 15 20 20 C 1.54602 * 102.62289 * 265.52771 * 19 18 17 21 21 C 1.51574 * 102.84283 * 334.49432 * 20 19 18 22 22 C 1.37920 * 131.56557 * 196.03142 * 21 20 19 23 23 C 1.38299 * 120.08405 * 179.58217 * 22 21 20 24 24 C 1.38310 * 119.88230 * 359.94246 * 23 22 21 25 25 C 1.37905 * 120.26531 * 0.15607 * 24 23 22 26 26 C 1.38964 * 107.95416 * 15.85172 * 21 20 19 27 27 C 1.38282 * 120.09998 * 0.27320 * 13 12 11 28 28 H 0.97003 * 119.99883 * 359.97438 * 1 2 3 29 29 H 1.08005 * 120.05805 * 0.02562 * 10 9 7 30 30 H 1.08000 * 119.84471 * 180.02562 * 11 10 9 31 31 H 1.08005 * 119.78795 * 179.97438 * 12 11 10 32 32 H 0.97001 * 119.99902 * 324.52946 * 14 13 12 33 33 H 1.09005 * 109.47211 * 63.25295 * 17 15 14 34 34 H 1.08991 * 109.47490 * 303.25216 * 17 15 14 35 35 H 1.09011 * 110.77611 * 147.24666 * 19 18 17 36 36 H 1.08997 * 110.78166 * 23.81546 * 19 18 17 37 37 H 1.09000 * 110.73587 * 216.15913 * 20 19 18 38 38 H 1.08991 * 110.73783 * 92.83231 * 20 19 18 39 39 H 1.08000 * 119.95629 * 359.59612 * 22 21 20 40 40 H 1.07994 * 120.06105 * 179.97438 * 23 22 21 41 41 H 1.08001 * 119.86681 * 180.18017 * 24 23 22 42 42 H 1.08000 * 119.90306 * 179.75567 * 25 24 23 43 43 H 1.08003 * 120.15485 * 179.72884 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.7023 1.3463 -0.0006 5 1 1.8836 2.3964 -1.2125 6 1 1.8836 2.3964 1.2124 7 6 2.0079 -1.2119 0.0005 8 1 3.0814 -1.2156 0.1185 9 6 1.3093 -2.4316 -0.1535 10 6 0.1407 -2.4846 -0.9366 11 6 -0.5338 -3.6755 -1.0825 12 6 -0.0686 -4.8233 -0.4618 13 6 1.0861 -4.7861 0.3156 14 7 1.5473 -5.9516 0.9377 15 6 2.8714 -6.1718 1.0595 16 8 3.6621 -5.3182 0.7171 17 6 3.3694 -7.4785 1.6211 18 7 4.8345 -7.4412 1.7227 19 6 5.4579 -7.4020 0.3820 20 6 5.7471 -8.8943 0.1001 21 6 5.8635 -9.4837 1.4917 22 6 6.3865 -10.6792 1.9384 23 6 6.3777 -10.9784 3.2886 24 6 5.8445 -10.0759 4.1909 25 6 5.3185 -8.8800 3.7494 26 6 5.3203 -8.5727 2.3896 27 6 1.7749 -3.5981 0.4780 28 1 -0.4850 0.8401 0.0004 29 1 -0.2256 -1.5924 -1.4228 30 1 -1.4301 -3.7155 -1.6838 31 1 -0.6049 -5.7531 -0.5817 32 1 0.9141 -6.6011 1.2812 33 1 3.0716 -8.2942 0.9622 34 1 2.9405 -7.6358 2.6106 35 1 6.3832 -6.8260 0.4025 36 1 4.7649 -6.9964 -0.3551 37 1 6.6826 -9.0095 -0.4473 38 1 4.9211 -9.3513 -0.4446 39 1 6.8036 -11.3825 1.2328 40 1 6.7869 -11.9147 3.6379 41 1 5.8404 -10.3085 5.2456 42 1 4.9000 -8.1813 4.4586 43 1 2.6681 -3.5673 1.0843 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001180288661.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:20:51 Heat of formation + Delta-G solvation = 17.114982 kcal Electronic energy + Delta-G solvation = -25701.053661 eV Core-core repulsion = 22096.303059 eV Total energy + Delta-G solvation = -3604.750602 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.06695 -40.90014 -39.00890 -37.54371 -36.13918 -34.82050 -33.44622 -31.73522 -31.36466 -30.04479 -29.76475 -27.56136 -27.18997 -24.03853 -23.46960 -22.76143 -22.18590 -21.97881 -21.03060 -19.52655 -18.19615 -17.86100 -17.34752 -17.15727 -16.80659 -16.47956 -16.22900 -16.19480 -15.98461 -15.23659 -14.89528 -14.68728 -14.63649 -14.47170 -14.01561 -13.82117 -13.59166 -13.54907 -13.38830 -13.10169 -12.97182 -12.85353 -12.76118 -12.43799 -12.19362 -12.18293 -12.02037 -11.78518 -11.49932 -11.19271 -10.90350 -10.71584 -10.30423 -9.72757 -9.34007 -8.89668 -8.76142 -8.54541 -6.40002 0.34326 0.46054 0.86054 0.99331 1.35219 1.44610 1.50476 1.74631 2.04012 2.21976 2.69351 2.77231 2.82169 3.57140 3.66217 3.73619 3.81148 3.97104 4.11770 4.15654 4.20784 4.29299 4.47456 4.51542 4.53801 4.61969 4.68721 4.76467 4.90756 4.96849 5.04195 5.12320 5.13387 5.15118 5.21451 5.33446 5.40335 5.50682 5.61345 5.75724 5.79420 5.84201 5.88786 6.06011 6.13052 6.29038 6.35364 6.63682 6.70210 6.94714 7.00688 7.32300 8.39399 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.020695 B = 0.002620 C = 0.002476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.669304 B =10684.785614 C =11305.116238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.835 5.835 2 C 0.033 3.967 3 Si 0.983 3.017 4 H -0.267 1.267 5 H -0.259 1.259 6 H -0.263 1.263 7 C -0.504 4.504 8 H 0.059 0.941 9 C 0.085 3.915 10 C -0.186 4.186 11 C -0.096 4.096 12 C -0.239 4.239 13 C 0.153 3.847 14 N -0.657 5.657 15 C 0.501 3.499 16 O -0.547 6.547 17 C 0.056 3.944 18 N -0.499 5.499 19 C 0.057 3.943 20 C -0.104 4.104 21 C -0.148 4.148 22 C -0.095 4.095 23 C -0.130 4.130 24 C -0.105 4.105 25 C -0.124 4.124 26 C 0.067 3.933 27 C -0.227 4.227 28 H 0.286 0.714 29 H 0.103 0.897 30 H 0.124 0.876 31 H 0.135 0.865 32 H 0.422 0.578 33 H 0.096 0.904 34 H 0.127 0.873 35 H 0.076 0.924 36 H 0.073 0.927 37 H 0.100 0.900 38 H 0.091 0.909 39 H 0.141 0.859 40 H 0.153 0.847 41 H 0.151 0.849 42 H 0.125 0.875 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.879 -22.508 4.870 24.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.463 5.463 2 C -0.180 4.180 3 Si 0.804 3.196 4 H -0.191 1.191 5 H -0.183 1.183 6 H -0.188 1.188 7 C -0.535 4.535 8 H 0.077 0.923 9 C 0.083 3.917 10 C -0.206 4.206 11 C -0.115 4.115 12 C -0.260 4.260 13 C 0.060 3.940 14 N -0.304 5.304 15 C 0.289 3.711 16 O -0.423 6.423 17 C -0.072 4.072 18 N -0.216 5.216 19 C -0.070 4.070 20 C -0.142 4.142 21 C -0.151 4.151 22 C -0.113 4.113 23 C -0.148 4.148 24 C -0.123 4.123 25 C -0.144 4.144 26 C -0.029 4.029 27 C -0.249 4.249 28 H 0.097 0.903 29 H 0.121 0.879 30 H 0.142 0.858 31 H 0.153 0.847 32 H 0.260 0.740 33 H 0.114 0.886 34 H 0.145 0.855 35 H 0.094 0.906 36 H 0.092 0.908 37 H 0.119 0.881 38 H 0.109 0.891 39 H 0.159 0.841 40 H 0.170 0.830 41 H 0.168 0.832 42 H 0.143 0.857 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 7.356 -21.282 4.900 23.045 hybrid contribution -0.168 0.509 -0.246 0.589 sum 7.189 -20.773 4.654 22.469 Atomic orbital electron populations 1.69834 1.08441 1.30086 1.37903 1.26656 0.95777 1.04052 0.91479 0.85149 0.78872 0.76366 0.79202 1.19115 1.18317 1.18795 1.19708 0.94705 0.91833 1.47236 0.92261 1.17873 0.92439 0.92473 0.88961 1.21338 0.99159 0.97331 1.02760 1.20874 0.99013 0.92426 0.99196 1.20546 1.00158 0.99081 1.06220 1.17516 0.95541 0.85086 0.95905 1.43278 1.07444 1.21273 1.58442 1.21222 0.81962 0.89815 0.78135 1.90754 1.55832 1.46909 1.48805 1.21997 0.87858 0.93180 1.04214 1.59652 1.04972 1.38638 1.18341 1.23053 0.99879 0.96119 0.87943 1.21707 1.04065 0.94243 0.94190 1.21217 1.03024 0.95270 0.95563 1.20717 0.98709 0.95172 0.96720 1.21446 1.00145 1.00704 0.92495 1.21257 0.97223 0.92638 1.01207 1.20756 1.02603 0.98505 0.92526 1.19722 0.99836 0.88909 0.94407 1.21175 1.03720 0.92973 1.06986 0.90306 0.87928 0.85761 0.84701 0.74027 0.88591 0.85494 0.90552 0.90843 0.88149 0.89067 0.84148 0.82974 0.83152 0.85727 0.89346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -45.76 10.89 21.82 0.24 -45.52 16 2 C 0.03 1.79 5.29 85.25 0.45 2.24 16 3 Si 0.98 41.50 29.57 68.60 2.03 43.53 16 4 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 5 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 6 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 7 C -0.50 -29.96 9.05 23.46 0.21 -29.74 16 8 H 0.06 3.57 7.86 -2.91 -0.02 3.55 16 9 C 0.09 4.97 5.52 -21.31 -0.12 4.85 16 10 C -0.19 -10.09 8.63 22.75 0.20 -9.90 16 11 C -0.10 -4.37 10.02 22.20 0.22 -4.15 16 12 C -0.24 -9.82 9.97 22.58 0.23 -9.60 16 13 C 0.15 6.78 6.29 38.10 0.24 7.02 16 14 N -0.66 -21.92 5.33 -303.65 -1.62 -23.54 16 15 C 0.50 17.32 7.16 87.66 0.63 17.95 16 16 O -0.55 -24.92 12.27 -3.04 -0.04 -24.95 16 17 C 0.06 1.36 5.25 85.56 0.45 1.81 16 18 N -0.50 -13.79 4.81 -692.94 -3.33 -17.12 16 19 C 0.06 1.53 6.10 86.65 0.53 2.06 16 20 C -0.10 -2.01 6.93 30.67 0.21 -1.80 16 21 C -0.15 -2.99 6.23 -19.49 -0.12 -3.11 16 22 C -0.09 -1.48 10.03 22.21 0.22 -1.25 16 23 C -0.13 -1.72 10.06 22.30 0.22 -1.50 16 24 C -0.10 -1.55 10.02 22.21 0.22 -1.33 16 25 C -0.12 -2.47 10.07 22.47 0.23 -2.24 16 26 C 0.07 1.56 5.56 38.29 0.21 1.77 16 27 C -0.23 -12.36 8.44 22.85 0.19 -12.17 16 28 H 0.29 14.10 8.30 -92.71 -0.77 13.33 16 29 H 0.10 5.81 6.35 -2.91 -0.02 5.79 16 30 H 0.12 4.76 8.06 -2.91 -0.02 4.74 16 31 H 0.14 4.33 8.06 -2.91 -0.02 4.31 16 32 H 0.42 9.88 8.82 -92.71 -0.82 9.06 16 33 H 0.10 1.84 8.07 -2.38 -0.02 1.82 16 34 H 0.13 2.48 8.09 -2.39 -0.02 2.46 16 35 H 0.08 2.21 8.14 -2.38 -0.02 2.19 16 36 H 0.07 2.23 6.40 -2.39 -0.02 2.22 16 37 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.14 1.54 8.06 -2.91 -0.02 1.51 16 40 H 0.15 1.12 8.06 -2.91 -0.02 1.10 16 41 H 0.15 1.41 8.06 -2.91 -0.02 1.38 16 42 H 0.12 2.37 8.06 -2.91 -0.02 2.35 16 43 H 0.09 5.16 6.24 -2.91 -0.02 5.14 16 Total: -1.00 -74.55 357.70 1.93 -72.63 By element: Atomic # 1 Polarization: 33.85 SS G_CDS: 0.22 Total: 34.07 kcal Atomic # 6 Polarization: -43.51 SS G_CDS: 4.43 Total: -39.09 kcal Atomic # 7 Polarization: -81.48 SS G_CDS: -4.71 Total: -86.19 kcal Atomic # 8 Polarization: -24.92 SS G_CDS: -0.04 Total: -24.95 kcal Atomic # 14 Polarization: 41.50 SS G_CDS: 2.03 Total: 43.53 kcal Total: -74.55 1.93 -72.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180288661.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.743 kcal (2) G-P(sol) polarization free energy of solvation -74.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.628 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds