Wall clock time and date at job start Tue Mar 31 2020 13:53:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30878 * 1 3 3 Si 1.86801 * 119.99887 * 2 1 4 4 H 1.48499 * 109.47309 * 274.98991 * 3 2 1 5 5 H 1.48494 * 109.47114 * 34.99540 * 3 2 1 6 6 H 1.48507 * 109.46805 * 154.99341 * 3 2 1 7 7 C 1.39896 * 119.99710 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99286 * 142.38919 * 7 2 1 9 9 C 1.41146 * 120.00269 * 322.39049 * 7 2 1 10 10 C 1.40871 * 120.16522 * 172.52301 * 9 7 2 11 11 C 1.36372 * 119.83421 * 180.02562 * 10 9 7 12 12 C 1.39488 * 120.16418 * 0.02562 * 11 10 9 13 13 N 1.39220 * 119.83337 * 179.97438 * 12 11 10 14 14 C 1.34782 * 120.00360 * 34.42824 * 13 12 11 15 15 O 1.21581 * 119.99206 * 6.03374 * 14 13 12 16 16 N 1.34772 * 120.00312 * 186.03405 * 14 13 12 17 17 C 1.39927 * 120.00203 * 185.19135 * 16 14 13 18 18 C 1.38886 * 120.10514 * 33.42485 * 17 16 14 19 19 C 1.37967 * 119.86387 * 180.02562 * 18 17 16 20 20 C 1.38573 * 120.30728 * 359.97438 * 19 18 17 21 21 C 1.38277 * 119.96244 * 0.02562 * 20 19 18 22 22 C 1.38385 * 119.91734 * 0.02919 * 21 20 19 23 23 C 1.51386 * 109.75067 * 180.02562 * 21 20 19 24 24 C 1.54334 * 105.17256 * 342.80138 * 23 21 20 25 25 C 1.51700 * 130.22107 * 179.86586 * 20 19 18 26 26 C 1.39487 * 120.33137 * 0.25372 * 12 11 10 27 27 C 1.36374 * 120.16832 * 359.47918 * 26 12 11 28 28 H 0.97003 * 120.00016 * 0.02562 * 1 2 3 29 29 H 1.08006 * 120.08235 * 359.97438 * 10 9 7 30 30 H 1.07994 * 119.91993 * 179.97438 * 11 10 9 31 31 H 0.97002 * 119.99761 * 214.43288 * 13 12 11 32 32 H 0.97006 * 119.99637 * 5.19078 * 16 14 13 33 33 H 1.08000 * 120.07090 * 0.03207 * 18 17 16 34 34 H 1.07997 * 119.84707 * 179.97438 * 19 18 17 35 35 H 1.07995 * 119.91672 * 180.02562 * 22 21 20 36 36 H 1.09001 * 110.30199 * 223.87369 * 23 21 20 37 37 H 1.09003 * 110.38137 * 101.76908 * 23 21 20 38 38 H 1.09003 * 110.81793 * 144.59702 * 24 23 21 39 39 H 1.08999 * 110.82617 * 267.94943 * 24 23 21 40 40 H 1.09000 * 110.25999 * 78.26960 * 25 20 19 41 41 H 1.09004 * 110.49258 * 316.01898 * 25 20 19 42 42 H 1.08000 * 119.91345 * 179.72722 * 26 12 11 43 43 H 1.07995 * 120.08342 * 180.23539 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2427 1.6178 0.0000 4 1 2.3848 2.1074 -1.3947 5 1 1.4970 2.6199 0.8029 6 1 3.5891 1.4120 0.5919 7 6 2.0082 -1.2116 0.0005 8 1 2.9199 -1.3089 -0.5703 9 6 1.5224 -2.3066 0.7470 10 6 2.1322 -3.5709 0.6276 11 6 1.6570 -4.6244 1.3516 12 6 0.5697 -4.4525 2.2083 13 7 0.0899 -5.5328 2.9438 14 6 0.9446 -6.4688 3.4023 15 8 2.1432 -6.3146 3.2694 16 7 0.4705 -7.5754 4.0080 17 6 1.3572 -8.4943 4.5802 18 6 2.5419 -8.0534 5.1557 19 6 3.4129 -8.9638 5.7180 20 6 3.1110 -10.3162 5.7118 21 6 1.9323 -10.7581 5.1396 22 6 1.0565 -9.8485 4.5735 23 6 1.8379 -12.2641 5.2610 24 6 3.2742 -12.7351 5.5725 25 6 3.8934 -11.4970 6.2549 26 6 -0.0429 -3.2050 2.3274 27 6 0.4246 -2.1410 1.6139 28 1 -0.4850 0.8401 -0.0004 29 1 2.9734 -3.7057 -0.0363 30 1 2.1232 -5.5943 1.2608 31 1 -0.8595 -5.6120 3.1261 32 1 -0.4856 -7.7350 4.0472 33 1 2.7808 -7.0002 5.1631 34 1 4.3342 -8.6207 6.1650 35 1 0.1357 -10.1936 4.1269 36 1 1.4926 -12.6983 4.3227 37 1 1.1653 -12.5380 6.0739 38 1 3.2636 -13.5873 6.2521 39 1 3.8093 -12.9800 4.6550 40 1 3.7753 -11.5627 7.3365 41 1 4.9479 -11.4088 5.9934 42 1 -0.8871 -3.0806 2.9895 43 1 -0.0484 -1.1749 1.7101 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185758113.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:53:05 Heat of formation + Delta-G solvation = 17.529473 kcal Electronic energy + Delta-G solvation = -25149.543035 eV Core-core repulsion = 21544.810407 eV Total energy + Delta-G solvation = -3604.732628 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.67746 -39.58204 -37.61410 -36.10363 -34.46529 -33.80817 -32.93885 -31.21566 -29.58274 -29.07259 -28.20092 -27.18208 -24.92660 -22.80280 -22.31108 -21.24430 -20.95166 -20.44474 -19.83608 -18.14039 -17.35818 -17.24179 -16.10412 -15.76429 -15.65549 -15.35370 -15.16692 -14.55211 -14.15469 -13.99830 -13.54959 -13.32372 -13.13441 -13.06472 -12.74586 -12.69737 -12.14861 -12.07517 -11.99625 -11.64147 -11.49123 -11.38891 -11.22779 -11.11870 -10.99404 -10.84362 -10.55018 -10.22059 -9.98604 -9.69525 -9.65680 -9.22259 -8.73813 -8.63678 -7.87591 -7.53100 -7.19265 -6.96291 -4.24494 1.33518 1.41636 2.62917 2.89913 3.00445 3.03581 3.13549 3.17987 3.53333 3.84592 3.88672 4.31509 4.40905 4.45294 4.54571 4.77346 4.99370 5.00399 5.13012 5.40268 5.45728 5.50819 5.55170 5.58840 5.70187 5.77330 5.82529 5.95405 6.02450 6.20625 6.33688 6.36268 6.44232 6.61826 6.64558 6.79125 6.83133 6.95233 7.10050 7.13499 7.28865 7.35065 7.58515 7.86025 7.98029 8.04412 8.24280 8.43093 8.55439 8.83895 8.88055 9.06524 9.90270 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.035150 B = 0.002139 C = 0.002077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.402427 B =13085.211687 C =13478.486253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.757 5.757 2 C 0.089 3.911 3 Si 0.896 3.104 4 H -0.268 1.268 5 H -0.273 1.273 6 H -0.256 1.256 7 C -0.458 4.458 8 H 0.083 0.917 9 C 0.105 3.895 10 C -0.230 4.230 11 C -0.063 4.063 12 C -0.015 4.015 13 N -0.657 5.657 14 C 0.690 3.310 15 O -0.561 6.561 16 N -0.692 5.692 17 C 0.180 3.820 18 C -0.119 4.119 19 C -0.086 4.086 20 C -0.124 4.124 21 C -0.082 4.082 22 C -0.142 4.142 23 C -0.079 4.079 24 C -0.121 4.121 25 C -0.078 4.078 26 C -0.100 4.100 27 C -0.186 4.186 28 H 0.284 0.716 29 H 0.093 0.907 30 H 0.099 0.901 31 H 0.391 0.609 32 H 0.403 0.597 33 H 0.140 0.860 34 H 0.121 0.879 35 H 0.120 0.880 36 H 0.073 0.927 37 H 0.078 0.922 38 H 0.074 0.926 39 H 0.071 0.929 40 H 0.076 0.924 41 H 0.072 0.928 42 H 0.088 0.912 43 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.826 -17.986 10.969 21.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.379 5.379 2 C -0.134 4.134 3 Si 0.719 3.281 4 H -0.194 1.194 5 H -0.198 1.198 6 H -0.179 1.179 7 C -0.485 4.485 8 H 0.101 0.899 9 C 0.102 3.898 10 C -0.250 4.250 11 C -0.083 4.083 12 C -0.107 4.107 13 N -0.302 5.302 14 C 0.392 3.608 15 O -0.437 6.437 16 N -0.340 5.340 17 C 0.084 3.916 18 C -0.139 4.139 19 C -0.105 4.105 20 C -0.125 4.125 21 C -0.082 4.082 22 C -0.163 4.163 23 C -0.116 4.116 24 C -0.158 4.158 25 C -0.115 4.115 26 C -0.120 4.120 27 C -0.206 4.206 28 H 0.095 0.905 29 H 0.111 0.889 30 H 0.117 0.883 31 H 0.224 0.776 32 H 0.237 0.763 33 H 0.158 0.842 34 H 0.139 0.861 35 H 0.138 0.862 36 H 0.091 0.909 37 H 0.096 0.904 38 H 0.092 0.908 39 H 0.090 0.910 40 H 0.094 0.906 41 H 0.091 0.909 42 H 0.106 0.894 43 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 0.006 -17.629 10.766 20.656 hybrid contribution -0.783 0.765 0.036 1.095 sum -0.777 -16.864 10.801 20.041 Atomic orbital electron populations 1.69990 1.08344 1.30061 1.29489 1.26044 0.94262 1.01955 0.91132 0.86498 0.81762 0.80523 0.79286 1.19353 1.19779 1.17920 1.19552 1.08309 0.94945 1.25674 0.89923 1.17584 0.90360 0.91351 0.90470 1.20466 1.04908 0.93196 1.06425 1.20198 0.95620 0.98100 0.94377 1.16815 1.04361 0.86086 1.03417 1.42058 1.08777 1.23598 1.55774 1.15992 0.85961 0.80143 0.78719 1.90936 1.13347 1.77902 1.61484 1.42690 1.09287 1.22137 1.59903 1.17298 0.91756 0.87781 0.94787 1.21154 0.94060 1.01152 0.97564 1.20493 0.99289 0.91460 0.99277 1.20564 0.96613 0.94029 1.01311 1.20225 0.94576 0.95194 0.98230 1.20202 1.01234 0.90451 1.04415 1.21011 0.97665 0.90917 1.02030 1.22282 0.95387 0.97329 1.00848 1.21038 0.99091 0.91507 0.99855 1.20115 0.99808 0.91717 1.00374 1.20871 1.00971 0.97861 1.00886 0.90472 0.88878 0.88264 0.77571 0.76252 0.84231 0.86104 0.86181 0.90871 0.90382 0.90762 0.91008 0.90604 0.90916 0.89403 0.86184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -18.69 11.23 55.55 0.62 -18.07 16 2 C 0.09 2.18 4.85 -17.34 -0.08 2.10 16 3 Si 0.90 18.01 29.68 -169.99 -5.05 12.97 16 4 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 5 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 6 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 7 C -0.46 -12.09 8.94 -37.86 -0.34 -12.42 16 8 H 0.08 2.12 8.05 -52.48 -0.42 1.69 16 9 C 0.11 2.83 5.70 -106.80 -0.61 2.22 16 10 C -0.23 -5.94 9.74 -39.26 -0.38 -6.32 16 11 C -0.06 -1.55 8.57 -39.79 -0.34 -1.89 16 12 C -0.01 -0.33 6.27 -83.57 -0.52 -0.86 16 13 N -0.66 -11.79 5.31 -14.10 -0.07 -11.87 16 14 C 0.69 12.57 8.00 -86.92 -0.70 11.87 16 15 O -0.56 -12.48 11.80 5.29 0.06 -12.42 16 16 N -0.69 -9.52 5.35 -14.26 -0.08 -9.60 16 17 C 0.18 2.54 6.27 -83.74 -0.53 2.02 16 18 C -0.12 -1.81 8.65 -39.44 -0.34 -2.15 16 19 C -0.09 -1.12 10.03 -39.56 -0.40 -1.52 16 20 C -0.12 -1.43 6.15 -103.99 -0.64 -2.07 16 21 C -0.08 -0.91 6.13 -104.22 -0.64 -1.55 16 22 C -0.14 -1.70 9.96 -39.35 -0.39 -2.09 16 23 C -0.08 -0.64 6.77 -26.85 -0.18 -0.83 16 24 C -0.12 -0.87 7.07 -25.33 -0.18 -1.05 16 25 C -0.08 -0.66 6.80 -26.69 -0.18 -0.84 16 26 C -0.10 -2.30 9.89 -39.79 -0.39 -2.70 16 27 C -0.19 -4.80 8.87 -39.26 -0.35 -5.14 16 28 H 0.28 6.26 8.30 -40.82 -0.34 5.92 16 29 H 0.09 2.29 8.06 -52.48 -0.42 1.87 16 30 H 0.10 2.44 6.49 -52.49 -0.34 2.10 16 31 H 0.39 5.46 8.84 -40.82 -0.36 5.10 16 32 H 0.40 4.00 8.85 -40.82 -0.36 3.64 16 33 H 0.14 2.42 6.43 -52.49 -0.34 2.09 16 34 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 35 H 0.12 1.17 8.06 -52.49 -0.42 0.74 16 36 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.09 1.77 8.06 -52.49 -0.42 1.34 16 43 H 0.12 3.13 5.77 -52.49 -0.30 2.83 16 LS Contribution 357.15 15.07 5.38 5.38 Total: -1.00 -30.77 357.15 -11.81 -42.58 By element: Atomic # 1 Polarization: 19.73 SS G_CDS: -5.49 Total: 14.24 kcal Atomic # 6 Polarization: -16.02 SS G_CDS: -7.19 Total: -23.22 kcal Atomic # 7 Polarization: -40.01 SS G_CDS: 0.47 Total: -39.53 kcal Atomic # 8 Polarization: -12.48 SS G_CDS: 0.06 Total: -12.42 kcal Atomic # 14 Polarization: 18.01 SS G_CDS: -5.05 Total: 12.97 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -30.77 -11.81 -42.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185758113.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.108 kcal (2) G-P(sol) polarization free energy of solvation -30.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.579 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds