Wall clock time and date at job start Tue Mar 31 2020 13:53:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30878 * 1 3 3 Si 1.86801 * 119.99887 * 2 1 4 4 H 1.48499 * 109.47309 * 274.98991 * 3 2 1 5 5 H 1.48494 * 109.47114 * 34.99540 * 3 2 1 6 6 H 1.48507 * 109.46805 * 154.99341 * 3 2 1 7 7 C 1.39896 * 119.99710 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99286 * 142.38919 * 7 2 1 9 9 C 1.41146 * 120.00269 * 322.39049 * 7 2 1 10 10 C 1.40871 * 120.16522 * 172.52301 * 9 7 2 11 11 C 1.36372 * 119.83421 * 180.02562 * 10 9 7 12 12 C 1.39488 * 120.16418 * 0.02562 * 11 10 9 13 13 N 1.39220 * 119.83337 * 179.97438 * 12 11 10 14 14 C 1.34782 * 120.00360 * 34.42824 * 13 12 11 15 15 O 1.21581 * 119.99206 * 6.03374 * 14 13 12 16 16 N 1.34772 * 120.00312 * 186.03405 * 14 13 12 17 17 C 1.39927 * 120.00203 * 185.19135 * 16 14 13 18 18 C 1.38886 * 120.10514 * 33.42485 * 17 16 14 19 19 C 1.37967 * 119.86387 * 180.02562 * 18 17 16 20 20 C 1.38573 * 120.30728 * 359.97438 * 19 18 17 21 21 C 1.38277 * 119.96244 * 0.02562 * 20 19 18 22 22 C 1.38385 * 119.91734 * 0.02919 * 21 20 19 23 23 C 1.51386 * 109.75067 * 180.02562 * 21 20 19 24 24 C 1.54334 * 105.17256 * 342.80138 * 23 21 20 25 25 C 1.51700 * 130.22107 * 179.86586 * 20 19 18 26 26 C 1.39487 * 120.33137 * 0.25372 * 12 11 10 27 27 C 1.36374 * 120.16832 * 359.47918 * 26 12 11 28 28 H 0.97003 * 120.00016 * 0.02562 * 1 2 3 29 29 H 1.08006 * 120.08235 * 359.97438 * 10 9 7 30 30 H 1.07994 * 119.91993 * 179.97438 * 11 10 9 31 31 H 0.97002 * 119.99761 * 214.43288 * 13 12 11 32 32 H 0.97006 * 119.99637 * 5.19078 * 16 14 13 33 33 H 1.08000 * 120.07090 * 0.03207 * 18 17 16 34 34 H 1.07997 * 119.84707 * 179.97438 * 19 18 17 35 35 H 1.07995 * 119.91672 * 180.02562 * 22 21 20 36 36 H 1.09001 * 110.30199 * 223.87369 * 23 21 20 37 37 H 1.09003 * 110.38137 * 101.76908 * 23 21 20 38 38 H 1.09003 * 110.81793 * 144.59702 * 24 23 21 39 39 H 1.08999 * 110.82617 * 267.94943 * 24 23 21 40 40 H 1.09000 * 110.25999 * 78.26960 * 25 20 19 41 41 H 1.09004 * 110.49258 * 316.01898 * 25 20 19 42 42 H 1.08000 * 119.91345 * 179.72722 * 26 12 11 43 43 H 1.07995 * 120.08342 * 180.23539 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2427 1.6178 0.0000 4 1 2.3848 2.1074 -1.3947 5 1 1.4970 2.6199 0.8029 6 1 3.5891 1.4120 0.5919 7 6 2.0082 -1.2116 0.0005 8 1 2.9199 -1.3089 -0.5703 9 6 1.5224 -2.3066 0.7470 10 6 2.1322 -3.5709 0.6276 11 6 1.6570 -4.6244 1.3516 12 6 0.5697 -4.4525 2.2083 13 7 0.0899 -5.5328 2.9438 14 6 0.9446 -6.4688 3.4023 15 8 2.1432 -6.3146 3.2694 16 7 0.4705 -7.5754 4.0080 17 6 1.3572 -8.4943 4.5802 18 6 2.5419 -8.0534 5.1557 19 6 3.4129 -8.9638 5.7180 20 6 3.1110 -10.3162 5.7118 21 6 1.9323 -10.7581 5.1396 22 6 1.0565 -9.8485 4.5735 23 6 1.8379 -12.2641 5.2610 24 6 3.2742 -12.7351 5.5725 25 6 3.8934 -11.4970 6.2549 26 6 -0.0429 -3.2050 2.3274 27 6 0.4246 -2.1410 1.6139 28 1 -0.4850 0.8401 -0.0004 29 1 2.9734 -3.7057 -0.0363 30 1 2.1232 -5.5943 1.2608 31 1 -0.8595 -5.6120 3.1261 32 1 -0.4856 -7.7350 4.0472 33 1 2.7808 -7.0002 5.1631 34 1 4.3342 -8.6207 6.1650 35 1 0.1357 -10.1936 4.1269 36 1 1.4926 -12.6983 4.3227 37 1 1.1653 -12.5380 6.0739 38 1 3.2636 -13.5873 6.2521 39 1 3.8093 -12.9800 4.6550 40 1 3.7753 -11.5627 7.3365 41 1 4.9479 -11.4088 5.9934 42 1 -0.8871 -3.0806 2.9895 43 1 -0.0484 -1.1749 1.7101 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185758113.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:53:04 Heat of formation + Delta-G solvation = 1.273611 kcal Electronic energy + Delta-G solvation = -25150.247942 eV Core-core repulsion = 21544.810407 eV Total energy + Delta-G solvation = -3605.437535 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.93501 -40.72661 -39.31292 -37.28713 -36.16790 -35.15997 -34.44496 -32.16154 -31.46631 -30.84984 -29.19079 -28.07685 -26.67671 -23.92290 -23.65572 -22.97156 -22.09968 -21.66456 -21.12133 -19.61936 -19.20503 -18.57830 -17.45773 -17.00658 -16.81679 -16.45427 -16.38720 -15.95448 -15.79268 -15.44789 -14.94350 -14.57731 -14.50972 -14.25643 -13.98597 -13.84778 -13.66701 -13.65348 -13.29748 -12.91103 -12.82287 -12.70572 -12.47317 -12.33534 -12.12498 -11.98482 -11.92544 -11.63636 -11.53821 -11.37319 -11.13893 -10.86100 -10.47712 -9.69526 -9.48210 -9.11905 -8.90695 -8.74952 -6.20138 0.31842 0.43379 0.85925 1.15178 1.35930 1.43557 1.55151 1.64345 2.06866 2.17395 2.59090 2.83571 3.24195 3.57824 3.69254 3.72675 4.07297 4.22355 4.24395 4.36719 4.38544 4.42887 4.48510 4.59236 4.76813 4.90462 4.91042 4.98797 5.01781 5.07369 5.08011 5.15892 5.21277 5.28541 5.35333 5.39120 5.42103 5.45376 5.57472 5.62202 5.70463 5.77745 6.02480 6.08670 6.12107 6.20932 6.33502 6.61270 6.87869 6.99559 7.04977 7.55007 8.10314 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.035150 B = 0.002139 C = 0.002077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.402427 B =13085.211687 C =13478.486253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.780 5.780 2 C 0.054 3.946 3 Si 0.972 3.028 4 H -0.256 1.256 5 H -0.258 1.258 6 H -0.264 1.264 7 C -0.496 4.496 8 H 0.075 0.925 9 C 0.077 3.923 10 C -0.253 4.253 11 C -0.073 4.073 12 C -0.001 4.001 13 N -0.648 5.648 14 C 0.691 3.309 15 O -0.605 6.605 16 N -0.670 5.670 17 C 0.155 3.845 18 C -0.146 4.146 19 C -0.099 4.099 20 C -0.128 4.128 21 C -0.086 4.086 22 C -0.137 4.137 23 C -0.078 4.078 24 C -0.117 4.117 25 C -0.079 4.079 26 C -0.097 4.097 27 C -0.207 4.207 28 H 0.298 0.702 29 H 0.090 0.910 30 H 0.094 0.906 31 H 0.414 0.586 32 H 0.423 0.577 33 H 0.107 0.893 34 H 0.129 0.871 35 H 0.146 0.854 36 H 0.084 0.916 37 H 0.096 0.904 38 H 0.099 0.901 39 H 0.071 0.929 40 H 0.090 0.910 41 H 0.077 0.923 42 H 0.122 0.878 43 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.962 -19.861 12.311 23.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.403 5.403 2 C -0.168 4.168 3 Si 0.792 3.208 4 H -0.180 1.180 5 H -0.182 1.182 6 H -0.188 1.188 7 C -0.523 4.523 8 H 0.093 0.907 9 C 0.074 3.926 10 C -0.273 4.273 11 C -0.093 4.093 12 C -0.095 4.095 13 N -0.296 5.296 14 C 0.393 3.607 15 O -0.484 6.484 16 N -0.320 5.320 17 C 0.060 3.940 18 C -0.166 4.166 19 C -0.117 4.117 20 C -0.129 4.129 21 C -0.087 4.087 22 C -0.158 4.158 23 C -0.115 4.115 24 C -0.154 4.154 25 C -0.116 4.116 26 C -0.117 4.117 27 C -0.227 4.227 28 H 0.109 0.891 29 H 0.108 0.892 30 H 0.112 0.888 31 H 0.251 0.749 32 H 0.262 0.738 33 H 0.125 0.875 34 H 0.147 0.853 35 H 0.164 0.836 36 H 0.102 0.898 37 H 0.114 0.886 38 H 0.117 0.883 39 H 0.090 0.910 40 H 0.109 0.891 41 H 0.095 0.905 42 H 0.140 0.860 43 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -1.198 -19.562 12.133 23.051 hybrid contribution -0.441 1.155 -0.300 1.272 sum -1.640 -18.408 11.833 21.944 Atomic orbital electron populations 1.69957 1.09518 1.31807 1.28990 1.26838 0.95024 1.04728 0.90205 0.85362 0.79682 0.75894 0.79889 1.18049 1.18198 1.18773 1.19750 1.08814 0.96561 1.27166 0.90675 1.17901 0.91328 0.91857 0.91519 1.20575 1.05570 0.93719 1.07476 1.20267 0.96534 0.97497 0.94988 1.16819 1.03052 0.87285 1.02301 1.41784 1.10010 1.22506 1.55298 1.16113 0.85264 0.80834 0.78533 1.90919 1.15435 1.78937 1.63071 1.42332 1.10425 1.20569 1.58651 1.17484 0.91830 0.88792 0.95886 1.21039 0.95701 1.00074 0.99832 1.20639 0.99383 0.92268 0.99459 1.21010 0.97320 0.94076 1.00472 1.20754 0.93914 0.97136 0.96860 1.20453 1.02249 0.89312 1.03757 1.21125 0.98758 0.88240 1.03331 1.22328 0.94447 0.97352 1.01311 1.21158 0.99037 0.90632 1.00772 1.20379 1.00383 0.90964 0.99961 1.20923 1.01327 0.98546 1.01865 0.89117 0.89221 0.88762 0.74899 0.73831 0.87470 0.85300 0.83596 0.89775 0.88576 0.88277 0.91028 0.89132 0.90455 0.85966 0.86803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -38.83 11.23 21.82 0.24 -38.58 16 2 C 0.05 2.66 4.85 85.24 0.41 3.07 16 3 Si 0.97 37.11 29.68 68.60 2.04 39.15 16 4 H -0.26 -9.23 7.11 99.48 0.71 -8.52 16 5 H -0.26 -9.16 7.11 99.48 0.71 -8.45 16 6 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 7 C -0.50 -27.28 8.94 23.39 0.21 -27.07 16 8 H 0.08 4.07 8.05 -2.91 -0.02 4.04 16 9 C 0.08 4.31 5.70 -21.28 -0.12 4.19 16 10 C -0.25 -13.79 9.74 22.48 0.22 -13.58 16 11 C -0.07 -3.70 8.57 22.14 0.19 -3.51 16 12 C 0.00 -0.05 6.27 38.57 0.24 0.19 16 13 N -0.65 -22.78 5.31 -316.79 -1.68 -24.47 16 14 C 0.69 25.25 8.00 179.05 1.43 26.68 16 15 O -0.61 -27.93 11.80 -3.97 -0.05 -27.98 16 16 N -0.67 -17.92 5.35 -317.29 -1.70 -19.61 16 17 C 0.16 4.34 6.27 38.12 0.24 4.58 16 18 C -0.15 -4.62 8.65 22.36 0.19 -4.42 16 19 C -0.10 -2.60 10.03 22.29 0.22 -2.38 16 20 C -0.13 -2.76 6.15 -19.46 -0.12 -2.88 16 21 C -0.09 -1.72 6.13 -19.60 -0.12 -1.84 16 22 C -0.14 -3.00 9.96 22.42 0.22 -2.78 16 23 C -0.08 -0.97 6.77 30.52 0.21 -0.76 16 24 C -0.12 -1.25 7.07 31.50 0.22 -1.03 16 25 C -0.08 -1.13 6.80 30.62 0.21 -0.92 16 26 C -0.10 -4.44 9.89 22.14 0.22 -4.22 16 27 C -0.21 -10.89 8.87 22.48 0.20 -10.69 16 28 H 0.30 12.97 8.30 -92.71 -0.77 12.20 16 29 H 0.09 4.74 8.06 -2.91 -0.02 4.71 16 30 H 0.09 4.84 6.49 -2.91 -0.02 4.82 16 31 H 0.41 10.71 8.84 -92.71 -0.82 9.89 16 32 H 0.42 7.55 8.85 -92.70 -0.82 6.73 16 33 H 0.11 4.04 6.43 -2.91 -0.02 4.02 16 34 H 0.13 2.99 8.06 -2.91 -0.02 2.96 16 35 H 0.15 2.36 8.06 -2.91 -0.02 2.34 16 36 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 39 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 40 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 41 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 42 H 0.12 4.68 8.06 -2.91 -0.02 4.66 16 43 H 0.11 6.05 5.77 -2.91 -0.02 6.04 16 Total: -1.00 -70.40 357.15 2.56 -67.84 By element: Atomic # 1 Polarization: 41.61 SS G_CDS: -0.58 Total: 41.03 kcal Atomic # 6 Polarization: -41.66 SS G_CDS: 4.28 Total: -37.38 kcal Atomic # 7 Polarization: -79.52 SS G_CDS: -3.13 Total: -82.66 kcal Atomic # 8 Polarization: -27.93 SS G_CDS: -0.05 Total: -27.98 kcal Atomic # 14 Polarization: 37.11 SS G_CDS: 2.04 Total: 39.15 kcal Total: -70.40 2.56 -67.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185758113.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.114 kcal (2) G-P(sol) polarization free energy of solvation -70.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.841 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds