Wall clock time and date at job start Tue Mar 31 2020 13:28:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86797 * 120.00074 * 2 1 4 4 H 1.48495 * 109.47208 * 270.00347 * 3 2 1 5 5 H 1.48506 * 109.46788 * 30.00340 * 3 2 1 6 6 H 1.48502 * 109.47189 * 150.00223 * 3 2 1 7 7 C 1.37877 * 119.99762 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99924 * 359.97438 * 7 2 1 9 9 C 1.50703 * 119.99852 * 179.97438 * 7 2 1 10 10 C 1.53495 * 114.20839 * 179.97438 * 9 7 2 11 11 N 1.47059 * 87.98785 * 220.15002 * 10 9 7 12 12 C 1.34782 * 136.06006 * 207.08423 * 11 10 9 13 13 O 1.21582 * 119.99663 * 0.02562 * 12 11 10 14 14 N 1.34773 * 120.00194 * 179.97438 * 12 11 10 15 15 C 1.39752 * 119.99884 * 184.52399 * 14 12 11 16 16 C 1.38733 * 120.13342 * 325.23767 * 15 14 12 17 17 C 1.38144 * 120.04825 * 180.02562 * 16 15 14 18 18 C 1.38415 * 120.32133 * 359.74789 * 17 16 15 19 19 C 1.38010 * 120.26230 * 0.50875 * 18 17 16 20 20 C 1.39290 * 119.94903 * 359.49482 * 19 18 17 21 21 C 1.48303 * 120.15491 * 180.27492 * 20 19 18 22 22 C 1.39379 * 120.12539 * 129.72180 * 21 20 19 23 23 C 1.38004 * 119.87635 * 179.78692 * 22 21 20 24 24 C 1.38330 * 120.12385 * 0.48364 * 23 22 21 25 25 C 1.38334 * 120.25135 * 359.75126 * 24 23 22 26 26 C 1.38005 * 120.12235 * 0.02562 * 25 24 23 27 27 C 1.47068 * 87.88479 * 27.34343 * 11 10 9 28 28 H 0.97002 * 119.99750 * 359.97438 * 1 2 3 29 29 H 1.09002 * 113.27961 * 313.06759 * 9 7 2 30 30 H 1.09003 * 113.46822 * 105.36532 * 10 9 7 31 31 H 1.09005 * 113.51988 * 334.93683 * 10 9 7 32 32 H 0.97006 * 119.99955 * 4.52459 * 14 12 11 33 33 H 1.07995 * 119.97676 * 0.04874 * 16 15 14 34 34 H 1.07995 * 119.83969 * 179.97438 * 17 16 15 35 35 H 1.07993 * 119.86783 * 180.25704 * 18 17 16 36 36 H 1.08001 * 120.02454 * 179.76563 * 19 18 17 37 37 H 1.08005 * 120.05765 * 0.02562 * 22 21 20 38 38 H 1.07998 * 119.93965 * 180.23586 * 23 22 21 39 39 H 1.07993 * 119.87530 * 179.71797 * 24 23 22 40 40 H 1.07995 * 119.93421 * 179.97438 * 25 24 23 41 41 H 1.08002 * 120.06173 * 180.02562 * 26 25 24 42 42 H 1.09001 * 113.46914 * 87.44213 * 27 11 10 43 43 H 1.09009 * 113.46452 * 217.88000 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5116 -1.1941 -0.0011 10 6 4.1410 -2.5941 -0.0010 11 7 5.1448 -2.0862 0.9461 12 6 6.4191 -2.3883 1.2644 13 8 6.9913 -3.2933 0.6884 14 7 7.0594 -1.6866 2.2205 15 6 8.4088 -1.9362 2.4850 16 6 8.9120 -3.2249 2.3813 17 6 10.2460 -3.4697 2.6437 18 6 11.0887 -2.4331 3.0059 19 6 10.6008 -1.1470 3.1181 20 6 9.2575 -0.8875 2.8561 21 6 8.7297 0.4938 2.9694 22 6 7.9840 1.0452 1.9290 23 6 7.4916 2.3295 2.0417 24 6 7.7454 3.0729 3.1803 25 6 8.4890 2.5325 4.2140 26 6 8.9825 1.2476 4.1141 27 6 4.1440 -1.1077 1.3977 28 1 -0.4850 0.8401 0.0004 29 1 3.9421 -0.5102 -0.7326 30 1 4.5602 -2.8816 -0.9653 31 1 3.4937 -3.3620 0.4228 32 1 6.5836 -1.0082 2.7250 33 1 8.2605 -4.0371 2.0949 34 1 10.6341 -4.4742 2.5624 35 1 12.1312 -2.6321 3.2053 36 1 11.2609 -0.3416 3.4046 37 1 7.7886 0.4671 1.0379 38 1 6.9104 2.7564 1.2377 39 1 7.3620 4.0791 3.2623 40 1 8.6844 3.1176 5.1005 41 1 9.5627 0.8265 4.9220 42 1 3.4969 -1.4830 2.1906 43 1 4.5659 -0.1287 1.6252 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001189693493.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:28:56 Heat of formation + Delta-G solvation = 67.219869 kcal Electronic energy + Delta-G solvation = -26451.815470 eV Core-core repulsion = 22849.237579 eV Total energy + Delta-G solvation = -3602.577891 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.73559 -39.50484 -38.49230 -37.38834 -34.57589 -32.71200 -32.65629 -31.03476 -30.44829 -29.27106 -28.40213 -25.40456 -25.15757 -23.62294 -23.03122 -22.11512 -21.03543 -20.47620 -19.06349 -17.97202 -17.38773 -17.08788 -16.94945 -16.04113 -15.54102 -15.29938 -15.00860 -14.76172 -14.46445 -14.15868 -13.95367 -13.60994 -13.53985 -13.31625 -13.14157 -12.92517 -12.60860 -12.54194 -11.98319 -11.89931 -11.73368 -11.59274 -11.20808 -11.10325 -10.91836 -10.72653 -10.30957 -10.14402 -9.93935 -9.51666 -9.39684 -9.28498 -9.06726 -8.72034 -8.53808 -8.24772 -7.81722 -6.26021 -4.29116 0.79714 1.27573 1.38225 1.60177 2.75028 3.16303 3.24890 3.26235 3.36532 3.61397 3.89043 4.14204 4.25656 4.46775 4.77352 4.85898 4.93497 4.97367 5.01367 5.03504 5.26395 5.32133 5.39960 5.53076 5.59014 5.65590 5.74731 5.83410 5.90542 5.94700 5.99674 6.15477 6.17208 6.25522 6.27140 6.34717 6.35849 6.40206 6.40914 6.51154 6.53582 6.60495 6.85035 7.07538 7.08342 7.39770 7.49682 8.28451 8.39062 8.77458 8.81043 9.34717 10.85890 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.012393 B = 0.004392 C = 0.003348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2258.808102 B = 6373.371270 C = 8361.747089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.078 3.922 3 Si 0.875 3.125 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.261 1.261 7 C -0.514 4.514 8 H 0.081 0.919 9 C -0.003 4.003 10 C 0.136 3.864 11 N -0.660 5.660 12 C 0.726 3.274 13 O -0.587 6.587 14 N -0.686 5.686 15 C 0.191 3.809 16 C -0.122 4.122 17 C -0.099 4.099 18 C -0.144 4.144 19 C -0.088 4.088 20 C -0.086 4.086 21 C -0.045 4.045 22 C -0.105 4.105 23 C -0.115 4.115 24 C -0.118 4.118 25 C -0.121 4.121 26 C -0.108 4.108 27 C 0.083 3.917 28 H 0.267 0.733 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.080 0.920 32 H 0.406 0.594 33 H 0.144 0.856 34 H 0.124 0.876 35 H 0.122 0.878 36 H 0.124 0.876 37 H 0.122 0.878 38 H 0.124 0.876 39 H 0.122 0.878 40 H 0.122 0.878 41 H 0.123 0.877 42 H 0.084 0.916 43 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.293 2.961 9.030 21.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.126 4.126 3 Si 0.702 3.298 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.185 1.185 7 C -0.551 4.551 8 H 0.099 0.901 9 C -0.023 4.023 10 C 0.014 3.986 11 N -0.397 5.397 12 C 0.430 3.570 13 O -0.466 6.466 14 N -0.332 5.332 15 C 0.095 3.905 16 C -0.142 4.142 17 C -0.118 4.118 18 C -0.163 4.163 19 C -0.107 4.107 20 C -0.089 4.089 21 C -0.045 4.045 22 C -0.123 4.123 23 C -0.133 4.133 24 C -0.137 4.137 25 C -0.139 4.139 26 C -0.126 4.126 27 C -0.040 4.040 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.098 0.902 32 H 0.242 0.758 33 H 0.162 0.838 34 H 0.142 0.858 35 H 0.140 0.860 36 H 0.142 0.858 37 H 0.140 0.860 38 H 0.142 0.858 39 H 0.140 0.860 40 H 0.140 0.860 41 H 0.141 0.859 42 H 0.102 0.898 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 19.635 2.371 8.610 21.570 hybrid contribution 0.066 1.339 0.332 1.381 sum 19.701 3.710 8.942 21.951 Atomic orbital electron populations 1.69893 1.06369 1.27362 1.49059 1.25006 0.94667 0.99150 0.93780 0.86897 0.80509 0.83595 0.78811 1.20122 1.21243 1.18495 1.20756 0.87358 0.94953 1.52075 0.90124 1.20777 0.96864 0.92832 0.91839 1.23036 0.85184 0.99304 0.91111 1.49116 1.08697 1.39295 1.42639 1.15308 0.80593 0.81413 0.79649 1.90860 1.66362 1.32765 1.56661 1.42626 1.09350 1.42480 1.38762 1.17504 0.82681 0.92701 0.97643 1.21351 0.96445 0.95917 1.00521 1.21105 0.93152 0.99209 0.98294 1.20993 0.99777 0.92781 1.02718 1.20930 0.93351 0.96963 0.99437 1.18544 0.93276 0.90754 1.06288 1.18715 0.98534 0.92638 0.94607 1.21335 0.97059 0.95472 0.98406 1.21176 0.99519 0.94394 0.98261 1.21233 0.98589 0.99981 0.93848 1.21078 0.98441 0.95442 0.98894 1.21212 1.00080 0.94229 0.97066 1.24004 0.87124 0.90457 1.02411 0.92312 0.92105 0.91859 0.90165 0.75751 0.83809 0.85840 0.86042 0.85818 0.85983 0.85785 0.86028 0.85958 0.85887 0.89767 0.92605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.23 13.96 55.43 0.77 -24.46 16 2 C 0.08 2.04 5.47 -17.82 -0.10 1.94 16 3 Si 0.88 19.45 27.15 -169.99 -4.61 14.83 16 4 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 5 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 6 H -0.26 -5.34 5.72 56.52 0.32 -5.02 16 7 C -0.51 -12.96 9.38 -34.44 -0.32 -13.28 16 8 H 0.08 2.21 8.06 -52.49 -0.42 1.79 16 9 C 0.00 -0.07 2.97 -91.12 -0.27 -0.34 16 10 C 0.14 2.64 8.17 -8.52 -0.07 2.57 16 11 N -0.66 -12.49 3.69 -190.87 -0.70 -13.20 16 12 C 0.73 13.70 8.64 -86.92 -0.75 12.94 16 13 O -0.59 -12.50 14.53 5.29 0.08 -12.42 16 14 N -0.69 -10.87 4.08 -14.05 -0.06 -10.93 16 15 C 0.19 2.86 6.23 -83.43 -0.52 2.34 16 16 C -0.12 -1.80 8.69 -39.43 -0.34 -2.14 16 17 C -0.10 -1.17 10.03 -39.55 -0.40 -1.57 16 18 C -0.14 -1.51 10.03 -39.60 -0.40 -1.91 16 19 C -0.09 -0.98 9.51 -39.27 -0.37 -1.35 16 20 C -0.09 -1.11 5.49 -104.73 -0.57 -1.69 16 21 C -0.04 -0.56 4.97 -104.91 -0.52 -1.08 16 22 C -0.10 -1.38 8.31 -39.24 -0.33 -1.71 16 23 C -0.12 -1.40 10.03 -39.63 -0.40 -1.80 16 24 C -0.12 -1.25 10.04 -39.51 -0.40 -1.65 16 25 C -0.12 -1.19 10.03 -39.63 -0.40 -1.58 16 26 C -0.11 -1.14 9.51 -39.24 -0.37 -1.52 16 27 C 0.08 1.56 7.31 -8.38 -0.06 1.50 16 28 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 29 H 0.06 1.30 7.03 -51.93 -0.37 0.93 16 30 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.08 1.53 8.10 -51.93 -0.42 1.11 16 32 H 0.41 6.00 7.37 -40.82 -0.30 5.70 16 33 H 0.14 2.38 6.19 -52.49 -0.33 2.05 16 34 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 35 H 0.12 0.95 8.06 -52.49 -0.42 0.52 16 36 H 0.12 1.11 8.04 -52.49 -0.42 0.69 16 37 H 0.12 1.79 7.64 -52.48 -0.40 1.39 16 38 H 0.12 1.41 8.06 -52.49 -0.42 0.99 16 39 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 40 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 41 H 0.12 1.09 8.04 -52.49 -0.42 0.66 16 42 H 0.08 1.58 8.10 -51.93 -0.42 1.16 16 43 H 0.06 1.00 7.15 -51.92 -0.37 0.63 16 LS Contribution 360.62 15.07 5.43 5.43 Total: -1.00 -29.55 360.62 -11.30 -40.86 By element: Atomic # 1 Polarization: 15.84 SS G_CDS: -5.62 Total: 10.21 kcal Atomic # 6 Polarization: -3.73 SS G_CDS: -6.59 Total: -10.32 kcal Atomic # 7 Polarization: -48.60 SS G_CDS: 0.01 Total: -48.59 kcal Atomic # 8 Polarization: -12.50 SS G_CDS: 0.08 Total: -12.42 kcal Atomic # 14 Polarization: 19.45 SS G_CDS: -4.61 Total: 14.83 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -29.55 -11.30 -40.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189693493.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.078 kcal (2) G-P(sol) polarization free energy of solvation -29.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.858 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds