Wall clock time and date at job start Tue Mar 31 2020 13:28:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86797 * 120.00074 * 2 1 4 4 H 1.48495 * 109.47208 * 270.00347 * 3 2 1 5 5 H 1.48506 * 109.46788 * 30.00340 * 3 2 1 6 6 H 1.48502 * 109.47189 * 150.00223 * 3 2 1 7 7 C 1.37877 * 119.99762 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99924 * 359.97438 * 7 2 1 9 9 C 1.50703 * 119.99852 * 179.97438 * 7 2 1 10 10 C 1.53495 * 114.20839 * 179.97438 * 9 7 2 11 11 N 1.47059 * 87.98785 * 220.15002 * 10 9 7 12 12 C 1.34782 * 136.06006 * 207.08423 * 11 10 9 13 13 O 1.21582 * 119.99663 * 0.02562 * 12 11 10 14 14 N 1.34773 * 120.00194 * 179.97438 * 12 11 10 15 15 C 1.39752 * 119.99884 * 184.52399 * 14 12 11 16 16 C 1.38733 * 120.13342 * 325.23767 * 15 14 12 17 17 C 1.38144 * 120.04825 * 180.02562 * 16 15 14 18 18 C 1.38415 * 120.32133 * 359.74789 * 17 16 15 19 19 C 1.38010 * 120.26230 * 0.50875 * 18 17 16 20 20 C 1.39290 * 119.94903 * 359.49482 * 19 18 17 21 21 C 1.48303 * 120.15491 * 180.27492 * 20 19 18 22 22 C 1.39379 * 120.12539 * 129.72180 * 21 20 19 23 23 C 1.38004 * 119.87635 * 179.78692 * 22 21 20 24 24 C 1.38330 * 120.12385 * 0.48364 * 23 22 21 25 25 C 1.38334 * 120.25135 * 359.75126 * 24 23 22 26 26 C 1.38005 * 120.12235 * 0.02562 * 25 24 23 27 27 C 1.47068 * 87.88479 * 27.34343 * 11 10 9 28 28 H 0.97002 * 119.99750 * 359.97438 * 1 2 3 29 29 H 1.09002 * 113.27961 * 313.06759 * 9 7 2 30 30 H 1.09003 * 113.46822 * 105.36532 * 10 9 7 31 31 H 1.09005 * 113.51988 * 334.93683 * 10 9 7 32 32 H 0.97006 * 119.99955 * 4.52459 * 14 12 11 33 33 H 1.07995 * 119.97676 * 0.04874 * 16 15 14 34 34 H 1.07995 * 119.83969 * 179.97438 * 17 16 15 35 35 H 1.07993 * 119.86783 * 180.25704 * 18 17 16 36 36 H 1.08001 * 120.02454 * 179.76563 * 19 18 17 37 37 H 1.08005 * 120.05765 * 0.02562 * 22 21 20 38 38 H 1.07998 * 119.93965 * 180.23586 * 23 22 21 39 39 H 1.07993 * 119.87530 * 179.71797 * 24 23 22 40 40 H 1.07995 * 119.93421 * 179.97438 * 25 24 23 41 41 H 1.08002 * 120.06173 * 180.02562 * 26 25 24 42 42 H 1.09001 * 113.46914 * 87.44213 * 27 11 10 43 43 H 1.09009 * 113.46452 * 217.88000 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5116 -1.1941 -0.0011 10 6 4.1410 -2.5941 -0.0010 11 7 5.1448 -2.0862 0.9461 12 6 6.4191 -2.3883 1.2644 13 8 6.9913 -3.2933 0.6884 14 7 7.0594 -1.6866 2.2205 15 6 8.4088 -1.9362 2.4850 16 6 8.9120 -3.2249 2.3813 17 6 10.2460 -3.4697 2.6437 18 6 11.0887 -2.4331 3.0059 19 6 10.6008 -1.1470 3.1181 20 6 9.2575 -0.8875 2.8561 21 6 8.7297 0.4938 2.9694 22 6 7.9840 1.0452 1.9290 23 6 7.4916 2.3295 2.0417 24 6 7.7454 3.0729 3.1803 25 6 8.4890 2.5325 4.2140 26 6 8.9825 1.2476 4.1141 27 6 4.1440 -1.1077 1.3977 28 1 -0.4850 0.8401 0.0004 29 1 3.9421 -0.5102 -0.7326 30 1 4.5602 -2.8816 -0.9653 31 1 3.4937 -3.3620 0.4228 32 1 6.5836 -1.0082 2.7250 33 1 8.2605 -4.0371 2.0949 34 1 10.6341 -4.4742 2.5624 35 1 12.1312 -2.6321 3.2053 36 1 11.2609 -0.3416 3.4046 37 1 7.7886 0.4671 1.0379 38 1 6.9104 2.7564 1.2377 39 1 7.3620 4.0791 3.2623 40 1 8.6844 3.1176 5.1005 41 1 9.5627 0.8265 4.9220 42 1 3.4969 -1.4830 2.1906 43 1 4.5659 -0.1287 1.6252 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001189693493.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:28:56 Heat of formation + Delta-G solvation = 52.582816 kcal Electronic energy + Delta-G solvation = -26452.450180 eV Core-core repulsion = 22849.237579 eV Total energy + Delta-G solvation = -3603.212601 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.99061 -40.71763 -39.57173 -38.69205 -35.83583 -34.68310 -33.56635 -31.95523 -31.74957 -30.40337 -29.54067 -27.07368 -26.81849 -24.52058 -24.05730 -23.09855 -22.08212 -21.85090 -20.55109 -19.38571 -18.95197 -18.48916 -17.95388 -17.06309 -16.87993 -16.54505 -16.29756 -15.92818 -15.62348 -15.41566 -15.16420 -14.94789 -14.77634 -14.37006 -14.32187 -14.21460 -13.90505 -13.56762 -13.50515 -13.36109 -12.83606 -12.68781 -12.55937 -12.46810 -12.07016 -11.96471 -11.86258 -11.71747 -11.35900 -11.24499 -11.00683 -10.68083 -10.29135 -9.90018 -9.79875 -9.42056 -8.92399 -8.28442 -6.36303 -0.09975 0.39548 0.44722 0.71068 1.36615 1.40630 1.43994 1.52822 1.95642 2.37697 2.72825 2.76201 2.94711 3.03042 3.58170 3.92148 3.94844 4.05312 4.08292 4.15729 4.23456 4.26221 4.31429 4.45885 4.48377 4.52074 4.55372 4.58555 4.62798 4.68638 4.75235 4.80608 4.90801 5.08802 5.10130 5.30244 5.34385 5.36266 5.50597 5.55801 5.58291 5.58762 5.60394 5.64624 6.01872 6.08549 6.10521 6.27833 6.70700 6.89320 7.30602 7.36412 8.86899 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.012393 B = 0.004392 C = 0.003348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2258.808102 B = 6373.371270 C = 8361.747089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.023 3.977 3 Si 0.938 3.062 4 H -0.275 1.275 5 H -0.288 1.288 6 H -0.231 1.231 7 C -0.513 4.513 8 H 0.044 0.956 9 C -0.008 4.008 10 C 0.138 3.862 11 N -0.661 5.661 12 C 0.726 3.274 13 O -0.616 6.616 14 N -0.673 5.673 15 C 0.159 3.841 16 C -0.145 4.145 17 C -0.102 4.102 18 C -0.131 4.131 19 C -0.086 4.086 20 C -0.086 4.086 21 C -0.057 4.057 22 C -0.122 4.122 23 C -0.130 4.130 24 C -0.120 4.120 25 C -0.116 4.116 26 C -0.106 4.106 27 C 0.097 3.903 28 H 0.268 0.732 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.079 0.921 32 H 0.411 0.589 33 H 0.116 0.884 34 H 0.144 0.856 35 H 0.158 0.842 36 H 0.152 0.848 37 H 0.098 0.902 38 H 0.125 0.875 39 H 0.143 0.857 40 H 0.152 0.848 41 H 0.144 0.856 42 H 0.085 0.915 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.838 5.029 11.024 25.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.176 4.176 3 Si 0.762 3.238 4 H -0.200 1.200 5 H -0.214 1.214 6 H -0.154 1.154 7 C -0.551 4.551 8 H 0.062 0.938 9 C -0.028 4.028 10 C 0.015 3.985 11 N -0.398 5.398 12 C 0.430 3.570 13 O -0.497 6.497 14 N -0.320 5.320 15 C 0.064 3.936 16 C -0.165 4.165 17 C -0.120 4.120 18 C -0.149 4.149 19 C -0.105 4.105 20 C -0.089 4.089 21 C -0.057 4.057 22 C -0.141 4.141 23 C -0.148 4.148 24 C -0.137 4.137 25 C -0.134 4.134 26 C -0.124 4.124 27 C -0.025 4.025 28 H 0.077 0.923 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.098 0.902 32 H 0.248 0.752 33 H 0.134 0.866 34 H 0.162 0.838 35 H 0.176 0.824 36 H 0.170 0.830 37 H 0.116 0.884 38 H 0.143 0.857 39 H 0.161 0.839 40 H 0.170 0.830 41 H 0.162 0.838 42 H 0.103 0.897 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 23.223 4.435 10.631 25.923 hybrid contribution -0.961 0.614 -0.266 1.171 sum 22.263 5.050 10.365 25.071 Atomic orbital electron populations 1.70039 1.08368 1.28362 1.51298 1.25839 0.95300 1.03008 0.93471 0.85883 0.80272 0.78639 0.79038 1.20009 1.21370 1.15425 1.20902 0.89492 0.93569 1.51144 0.93819 1.20676 0.94299 0.94199 0.93630 1.22926 0.85417 0.98448 0.91704 1.48987 1.08849 1.39327 1.42641 1.15393 0.80268 0.81401 0.79969 1.90840 1.66878 1.34108 1.57876 1.42411 1.09908 1.41843 1.37809 1.17751 0.82381 0.93572 0.99879 1.21286 0.97665 0.95320 1.02251 1.21376 0.92044 1.00934 0.97657 1.21411 1.01169 0.91941 1.00404 1.21321 0.92717 0.98123 0.98298 1.18726 0.93893 0.90585 1.05707 1.18762 0.99092 0.92560 0.95274 1.21222 0.98574 0.96077 0.98205 1.21304 0.99998 0.94234 0.99248 1.21537 0.98180 1.00775 0.93257 1.21451 0.97160 0.95267 0.99528 1.21467 0.99817 0.94382 0.96695 1.23748 0.86818 0.91334 1.00606 0.92301 0.91603 0.91470 0.90238 0.75205 0.86566 0.83795 0.82424 0.83033 0.88381 0.85663 0.83896 0.82989 0.83823 0.89694 0.90885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.99 13.96 21.45 0.30 -54.69 16 2 C 0.02 1.20 5.47 84.65 0.46 1.67 16 3 Si 0.94 39.75 27.15 68.60 1.86 41.61 16 4 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 5 H -0.29 -12.21 7.11 99.48 0.71 -11.51 16 6 H -0.23 -8.60 5.72 99.48 0.57 -8.03 16 7 C -0.51 -26.56 9.38 25.60 0.24 -26.32 16 8 H 0.04 2.52 8.06 -2.91 -0.02 2.50 16 9 C -0.01 -0.35 2.97 -11.12 -0.03 -0.39 16 10 C 0.14 5.44 8.17 83.18 0.68 6.12 16 11 N -0.66 -25.04 3.69 -876.05 -3.23 -28.27 16 12 C 0.73 27.76 8.64 179.05 1.55 29.31 16 13 O -0.62 -26.98 14.53 -3.97 -0.06 -27.03 16 14 N -0.67 -21.42 4.08 -316.62 -1.29 -22.71 16 15 C 0.16 4.72 6.23 38.41 0.24 4.96 16 16 C -0.14 -4.29 8.69 22.37 0.19 -4.10 16 17 C -0.10 -2.23 10.03 22.29 0.22 -2.01 16 18 C -0.13 -2.28 10.03 22.26 0.22 -2.05 16 19 C -0.09 -1.62 9.51 22.47 0.21 -1.41 16 20 C -0.09 -2.10 5.49 -19.94 -0.11 -2.21 16 21 C -0.06 -1.30 4.97 -20.05 -0.10 -1.40 16 22 C -0.12 -3.12 8.31 22.49 0.19 -2.93 16 23 C -0.13 -2.90 10.03 22.24 0.22 -2.68 16 24 C -0.12 -2.13 10.04 22.31 0.22 -1.91 16 25 C -0.12 -1.82 10.03 22.24 0.22 -1.60 16 26 C -0.11 -1.87 9.51 22.49 0.21 -1.66 16 27 C 0.10 3.60 7.31 83.26 0.61 4.21 16 28 H 0.27 14.67 8.31 -92.71 -0.77 13.90 16 29 H 0.07 2.75 7.03 -2.39 -0.02 2.73 16 30 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 31 H 0.08 3.13 8.10 -2.38 -0.02 3.11 16 32 H 0.41 11.97 7.37 -92.70 -0.68 11.29 16 33 H 0.12 4.05 6.19 -2.91 -0.02 4.03 16 34 H 0.14 2.45 8.06 -2.91 -0.02 2.43 16 35 H 0.16 1.63 8.06 -2.91 -0.02 1.61 16 36 H 0.15 1.99 8.04 -2.91 -0.02 1.97 16 37 H 0.10 2.91 7.64 -2.91 -0.02 2.89 16 38 H 0.13 2.66 8.06 -2.91 -0.02 2.63 16 39 H 0.14 1.89 8.06 -2.91 -0.02 1.87 16 40 H 0.15 1.47 8.06 -2.91 -0.02 1.45 16 41 H 0.14 1.90 8.04 -2.91 -0.02 1.88 16 42 H 0.08 3.14 8.10 -2.39 -0.02 3.12 16 43 H 0.07 2.46 7.15 -2.38 -0.02 2.44 16 Total: -1.00 -66.73 360.62 3.25 -63.48 By element: Atomic # 1 Polarization: 31.80 SS G_CDS: 0.21 Total: 32.01 kcal Atomic # 6 Polarization: -9.85 SS G_CDS: 5.46 Total: -4.39 kcal Atomic # 7 Polarization: -101.46 SS G_CDS: -4.22 Total: -105.68 kcal Atomic # 8 Polarization: -26.98 SS G_CDS: -0.06 Total: -27.03 kcal Atomic # 14 Polarization: 39.75 SS G_CDS: 1.86 Total: 41.61 kcal Total: -66.73 3.25 -63.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189693493.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.066 kcal (2) G-P(sol) polarization free energy of solvation -66.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.483 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds