Wall clock time and date at job start Tue Mar 31 2020 13:14:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 120.00097 * 2 1 4 4 H 1.48493 * 109.47474 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.46962 * 300.00080 * 3 2 1 6 6 H 1.48505 * 109.47303 * 59.99710 * 3 2 1 7 7 C 1.37873 * 120.00007 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99980 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99748 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.46822 * 179.97438 * 9 7 2 11 11 N 1.46501 * 109.47012 * 179.97438 * 10 9 7 12 12 C 1.34780 * 120.00082 * 180.02562 * 11 10 9 13 13 O 1.21595 * 119.99650 * 359.97438 * 12 11 10 14 14 N 1.34770 * 120.00070 * 179.97438 * 12 11 10 15 15 C 1.46503 * 120.00132 * 179.97438 * 14 12 11 16 16 C 1.50906 * 110.19766 * 88.35641 * 15 14 12 17 17 C 1.37901 * 132.18041 * 299.47676 * 16 15 14 18 18 C 1.38345 * 120.04188 * 180.18412 * 17 16 15 19 19 C 1.38351 * 120.09329 * 359.48222 * 18 17 16 20 20 C 1.37926 * 120.25582 * 0.26229 * 19 18 17 21 21 C 1.39201 * 107.53114 * 119.17595 * 16 15 14 22 22 C 1.48388 * 109.45047 * 359.97438 * 21 16 15 23 23 C 1.39613 * 131.19185 * 180.02562 * 22 21 16 24 24 C 1.37925 * 119.96329 * 179.97438 * 23 22 21 25 25 C 1.38345 * 120.25672 * 0.02562 * 24 23 22 26 26 C 1.38346 * 120.09417 * 359.96970 * 25 24 23 27 27 C 1.37898 * 120.04104 * 0.05591 * 26 25 24 28 28 H 0.97008 * 120.00034 * 359.97438 * 1 2 3 29 29 H 1.08991 * 109.47332 * 59.99477 * 9 7 2 30 30 H 1.09001 * 109.47065 * 299.98892 * 9 7 2 31 31 H 1.09000 * 109.47168 * 59.99668 * 10 9 7 32 32 H 1.08999 * 109.47455 * 299.99919 * 10 9 7 33 33 H 0.96994 * 119.99861 * 359.97438 * 11 10 9 34 34 H 0.97000 * 120.00131 * 0.02562 * 14 12 11 35 35 H 1.09005 * 110.11677 * 326.66132 * 15 14 12 36 36 H 1.08000 * 119.98244 * 359.91880 * 17 16 15 37 37 H 1.08002 * 119.95678 * 179.76819 * 18 17 16 38 38 H 1.07992 * 119.86991 * 180.23561 * 19 18 17 39 39 H 1.07990 * 120.01857 * 180.02562 * 20 19 18 40 40 H 1.07998 * 120.02222 * 359.95187 * 23 22 21 41 41 H 1.08000 * 119.87005 * 179.97438 * 24 23 22 42 42 H 1.07996 * 119.95232 * 180.02562 * 25 24 23 43 43 H 1.07992 * 119.98309 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2509 -2.4991 0.0005 10 6 2.2452 -3.6620 0.0005 11 7 1.5127 -4.9307 0.0012 12 6 2.1866 -6.0980 0.0018 13 8 3.4025 -6.0980 0.0014 14 7 1.5127 -7.2651 0.0029 15 6 2.2452 -8.5339 0.0030 16 6 2.5419 -8.9641 1.4187 17 6 3.2625 -8.3722 2.4345 18 6 3.3783 -9.0032 3.6603 19 6 2.7627 -10.2238 3.8730 20 6 2.0356 -10.8206 2.8643 21 6 1.9190 -10.1921 1.6230 22 6 1.2110 -10.5993 0.3841 23 6 0.4504 -11.7325 0.0899 24 6 -0.1131 -11.8783 -1.1605 25 6 0.0725 -10.9055 -2.1265 26 6 0.8249 -9.7800 -1.8420 27 6 1.3925 -9.6262 -0.5946 28 1 -0.4850 0.8401 0.0004 29 1 0.6246 -2.5570 -0.8895 30 1 0.6241 -2.5567 0.8904 31 1 2.8719 -3.6042 0.8905 32 1 2.8719 -3.6043 -0.8894 33 1 0.5427 -4.9307 0.0019 34 1 0.5427 -7.2651 0.0028 35 1 3.1728 -8.4313 -0.5603 36 1 3.7404 -7.4174 2.2719 37 1 3.9462 -8.5401 4.4537 38 1 2.8523 -10.7114 4.8324 39 1 1.5563 -11.7732 3.0347 40 1 0.3036 -12.4946 0.8409 41 1 -0.7009 -12.7557 -1.3865 42 1 -0.3714 -11.0245 -3.1038 43 1 0.9683 -9.0216 -2.5973 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001190056388.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:14:36 Heat of formation + Delta-G solvation = 23.162890 kcal Electronic energy + Delta-G solvation = -25482.931900 eV Core-core repulsion = 21878.443555 eV Total energy + Delta-G solvation = -3604.488345 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.27763 -39.30343 -38.38305 -35.63138 -34.65291 -33.19184 -32.74352 -31.50254 -30.74108 -29.41428 -28.97264 -26.44053 -24.54388 -23.87130 -21.77933 -21.55859 -21.07612 -20.85258 -20.46706 -18.20674 -17.27201 -16.53551 -16.46507 -16.20163 -15.67587 -15.19809 -14.94214 -14.63743 -14.51897 -14.26018 -14.19038 -13.73919 -13.58387 -13.56576 -13.23281 -13.04115 -12.60302 -12.50878 -12.28046 -11.87703 -11.60885 -11.17623 -11.14183 -11.05980 -11.03167 -10.61126 -10.32701 -10.03813 -9.89635 -9.57637 -9.32447 -9.24971 -9.01111 -8.93246 -8.49349 -8.28805 -8.21754 -6.08748 -4.11286 0.38814 1.01319 1.22326 1.69871 2.98074 3.28908 3.36513 3.41599 3.49836 3.53939 3.84672 3.94853 4.19926 4.40369 4.56732 4.61534 4.69831 4.78766 4.85346 4.94757 5.02469 5.16687 5.28523 5.33079 5.34471 5.48595 5.61127 5.65600 5.76022 5.88062 6.04023 6.18093 6.21488 6.27248 6.30944 6.37275 6.40086 6.51092 6.54233 6.64171 6.77720 6.80516 6.99327 7.22474 7.57564 7.64001 7.90586 8.26023 8.41739 8.92763 8.98024 9.53536 11.02952 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.016419 B = 0.002610 C = 0.002349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1704.939439 B =10726.291613 C =11917.000533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.896 3.104 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.519 4.519 8 H 0.060 0.940 9 C 0.012 3.988 10 C 0.141 3.859 11 N -0.737 5.737 12 C 0.700 3.300 13 O -0.595 6.595 14 N -0.737 5.737 15 C 0.247 3.753 16 C -0.095 4.095 17 C -0.078 4.078 18 C -0.114 4.114 19 C -0.118 4.118 20 C -0.100 4.100 21 C -0.060 4.060 22 C -0.041 4.041 23 C -0.101 4.101 24 C -0.112 4.112 25 C -0.118 4.118 26 C -0.083 4.083 27 C -0.104 4.104 28 H 0.261 0.739 29 H 0.022 0.978 30 H 0.022 0.978 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.394 0.606 34 H 0.397 0.603 35 H 0.115 0.885 36 H 0.132 0.868 37 H 0.127 0.873 38 H 0.125 0.875 39 H 0.121 0.879 40 H 0.123 0.877 41 H 0.126 0.874 42 H 0.128 0.872 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.877 -26.828 1.832 26.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.724 3.276 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.558 4.558 8 H 0.078 0.922 9 C -0.025 4.025 10 C 0.018 3.982 11 N -0.390 5.390 12 C 0.400 3.600 13 O -0.474 6.474 14 N -0.392 5.392 15 C 0.141 3.859 16 C -0.096 4.096 17 C -0.097 4.097 18 C -0.132 4.132 19 C -0.136 4.136 20 C -0.118 4.118 21 C -0.060 4.060 22 C -0.042 4.042 23 C -0.119 4.119 24 C -0.130 4.130 25 C -0.135 4.135 26 C -0.101 4.101 27 C -0.105 4.105 28 H 0.071 0.929 29 H 0.040 0.960 30 H 0.040 0.960 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.227 0.773 34 H 0.231 0.769 35 H 0.132 0.868 36 H 0.150 0.850 37 H 0.145 0.855 38 H 0.143 0.857 39 H 0.139 0.861 40 H 0.141 0.859 41 H 0.144 0.856 42 H 0.146 0.854 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 0.126 -26.624 1.813 26.686 hybrid contribution -0.583 0.894 0.062 1.069 sum -0.457 -25.730 1.875 25.802 Atomic orbital electron populations 1.69970 1.06089 1.26731 1.50549 1.24998 0.94892 0.99417 0.95035 0.86462 0.80188 0.83351 0.77598 1.19562 1.20953 1.20948 1.21088 0.93298 0.90337 1.51101 0.92165 1.19330 0.94265 0.91094 0.97813 1.21599 0.95618 0.80316 1.00654 1.45536 1.09909 1.05216 1.78307 1.16065 0.85687 0.80398 0.77820 1.90887 1.11574 1.86484 1.58438 1.45019 1.09395 1.03418 1.81417 1.18411 0.95174 0.80742 0.91545 1.20623 0.97943 0.95145 0.95898 1.20637 0.97213 1.00088 0.91731 1.21235 0.99616 0.95350 0.97011 1.21023 0.97873 0.95861 0.98837 1.20787 0.99448 0.99784 0.91780 1.19227 0.98342 0.95691 0.92764 1.19257 0.97166 0.95117 0.92652 1.20846 0.97246 0.96713 0.97091 1.21056 0.99617 0.99255 0.93098 1.21174 0.98901 0.93838 0.99634 1.20486 0.96546 0.97962 0.95147 1.20322 0.99343 0.96416 0.94414 0.92926 0.95977 0.95976 0.92772 0.92735 0.77345 0.76874 0.86790 0.85017 0.85482 0.85690 0.86091 0.85881 0.85566 0.85386 0.85426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.18 13.29 55.43 0.74 -25.44 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.90 21.42 29.54 -169.99 -5.02 16.40 16 4 H -0.27 -6.38 7.11 56.52 0.40 -5.97 16 5 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.52 -14.44 9.11 -34.44 -0.31 -14.75 16 8 H 0.06 1.65 7.74 -52.49 -0.41 1.24 16 9 C 0.01 0.31 5.09 -27.88 -0.14 0.17 16 10 C 0.14 3.02 5.61 -4.04 -0.02 3.00 16 11 N -0.74 -13.04 5.56 -65.22 -0.36 -13.41 16 12 C 0.70 12.18 8.56 -86.92 -0.74 11.44 16 13 O -0.60 -12.37 15.69 5.28 0.08 -12.29 16 14 N -0.74 -10.00 5.10 -60.75 -0.31 -10.31 16 15 C 0.25 3.24 3.21 -70.03 -0.22 3.01 16 16 C -0.09 -1.25 5.92 -104.29 -0.62 -1.87 16 17 C -0.08 -1.05 10.03 -39.67 -0.40 -1.45 16 18 C -0.11 -1.25 10.05 -39.50 -0.40 -1.65 16 19 C -0.12 -1.13 10.02 -39.65 -0.40 -1.53 16 20 C -0.10 -1.00 10.09 -39.18 -0.40 -1.40 16 21 C -0.06 -0.70 6.20 -104.84 -0.65 -1.35 16 22 C -0.04 -0.45 6.20 -104.84 -0.65 -1.10 16 23 C -0.10 -0.89 10.09 -39.18 -0.40 -1.28 16 24 C -0.11 -0.86 10.02 -39.66 -0.40 -1.25 16 25 C -0.12 -0.94 10.05 -39.50 -0.40 -1.33 16 26 C -0.08 -0.80 10.04 -39.67 -0.40 -1.20 16 27 C -0.10 -1.17 5.80 -104.29 -0.60 -1.78 16 28 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 29 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.05 1.21 8.14 -51.93 -0.42 0.78 16 32 H 0.05 1.22 8.14 -51.93 -0.42 0.79 16 33 H 0.39 6.07 8.49 -40.82 -0.35 5.73 16 34 H 0.40 4.57 8.63 -40.82 -0.35 4.22 16 35 H 0.11 1.66 7.56 -51.93 -0.39 1.27 16 36 H 0.13 1.97 7.75 -52.49 -0.41 1.57 16 37 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 38 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 39 H 0.12 0.92 8.06 -52.49 -0.42 0.49 16 40 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 41 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 42 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 43 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 LS Contribution 369.52 15.07 5.57 5.57 Total: -1.00 -32.55 369.52 -12.24 -44.79 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: -5.69 Total: 7.47 kcal Atomic # 6 Polarization: -5.54 SS G_CDS: -7.24 Total: -12.78 kcal Atomic # 7 Polarization: -49.22 SS G_CDS: 0.06 Total: -49.16 kcal Atomic # 8 Polarization: -12.37 SS G_CDS: 0.08 Total: -12.29 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.55 -12.24 -44.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001190056388.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.950 kcal (2) G-P(sol) polarization free energy of solvation -32.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.787 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds