Wall clock time and date at job start Tue Mar 31 2020 13:14:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 120.00097 * 2 1 4 4 H 1.48493 * 109.47474 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.46962 * 300.00080 * 3 2 1 6 6 H 1.48505 * 109.47303 * 59.99710 * 3 2 1 7 7 C 1.37873 * 120.00007 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99980 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99748 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.46822 * 179.97438 * 9 7 2 11 11 N 1.46501 * 109.47012 * 179.97438 * 10 9 7 12 12 C 1.34780 * 120.00082 * 180.02562 * 11 10 9 13 13 O 1.21595 * 119.99650 * 359.97438 * 12 11 10 14 14 N 1.34770 * 120.00070 * 179.97438 * 12 11 10 15 15 C 1.46503 * 120.00132 * 179.97438 * 14 12 11 16 16 C 1.50906 * 110.19766 * 88.35641 * 15 14 12 17 17 C 1.37901 * 132.18041 * 299.47676 * 16 15 14 18 18 C 1.38345 * 120.04188 * 180.18412 * 17 16 15 19 19 C 1.38351 * 120.09329 * 359.48222 * 18 17 16 20 20 C 1.37926 * 120.25582 * 0.26229 * 19 18 17 21 21 C 1.39201 * 107.53114 * 119.17595 * 16 15 14 22 22 C 1.48388 * 109.45047 * 359.97438 * 21 16 15 23 23 C 1.39613 * 131.19185 * 180.02562 * 22 21 16 24 24 C 1.37925 * 119.96329 * 179.97438 * 23 22 21 25 25 C 1.38345 * 120.25672 * 0.02562 * 24 23 22 26 26 C 1.38346 * 120.09417 * 359.96970 * 25 24 23 27 27 C 1.37898 * 120.04104 * 0.05591 * 26 25 24 28 28 H 0.97008 * 120.00034 * 359.97438 * 1 2 3 29 29 H 1.08991 * 109.47332 * 59.99477 * 9 7 2 30 30 H 1.09001 * 109.47065 * 299.98892 * 9 7 2 31 31 H 1.09000 * 109.47168 * 59.99668 * 10 9 7 32 32 H 1.08999 * 109.47455 * 299.99919 * 10 9 7 33 33 H 0.96994 * 119.99861 * 359.97438 * 11 10 9 34 34 H 0.97000 * 120.00131 * 0.02562 * 14 12 11 35 35 H 1.09005 * 110.11677 * 326.66132 * 15 14 12 36 36 H 1.08000 * 119.98244 * 359.91880 * 17 16 15 37 37 H 1.08002 * 119.95678 * 179.76819 * 18 17 16 38 38 H 1.07992 * 119.86991 * 180.23561 * 19 18 17 39 39 H 1.07990 * 120.01857 * 180.02562 * 20 19 18 40 40 H 1.07998 * 120.02222 * 359.95187 * 23 22 21 41 41 H 1.08000 * 119.87005 * 179.97438 * 24 23 22 42 42 H 1.07996 * 119.95232 * 180.02562 * 25 24 23 43 43 H 1.07992 * 119.98309 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2509 -2.4991 0.0005 10 6 2.2452 -3.6620 0.0005 11 7 1.5127 -4.9307 0.0012 12 6 2.1866 -6.0980 0.0018 13 8 3.4025 -6.0980 0.0014 14 7 1.5127 -7.2651 0.0029 15 6 2.2452 -8.5339 0.0030 16 6 2.5419 -8.9641 1.4187 17 6 3.2625 -8.3722 2.4345 18 6 3.3783 -9.0032 3.6603 19 6 2.7627 -10.2238 3.8730 20 6 2.0356 -10.8206 2.8643 21 6 1.9190 -10.1921 1.6230 22 6 1.2110 -10.5993 0.3841 23 6 0.4504 -11.7325 0.0899 24 6 -0.1131 -11.8783 -1.1605 25 6 0.0725 -10.9055 -2.1265 26 6 0.8249 -9.7800 -1.8420 27 6 1.3925 -9.6262 -0.5946 28 1 -0.4850 0.8401 0.0004 29 1 0.6246 -2.5570 -0.8895 30 1 0.6241 -2.5567 0.8904 31 1 2.8719 -3.6042 0.8905 32 1 2.8719 -3.6043 -0.8894 33 1 0.5427 -4.9307 0.0019 34 1 0.5427 -7.2651 0.0028 35 1 3.1728 -8.4313 -0.5603 36 1 3.7404 -7.4174 2.2719 37 1 3.9462 -8.5401 4.4537 38 1 2.8523 -10.7114 4.8324 39 1 1.5563 -11.7732 3.0347 40 1 0.3036 -12.4946 0.8409 41 1 -0.7009 -12.7557 -1.3865 42 1 -0.3714 -11.0245 -3.1038 43 1 0.9683 -9.0216 -2.5973 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001190056388.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:14:35 Heat of formation + Delta-G solvation = 4.429625 kcal Electronic energy + Delta-G solvation = -25483.744235 eV Core-core repulsion = 21878.443555 eV Total energy + Delta-G solvation = -3605.300680 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.18499 -40.66912 -39.13967 -36.91174 -36.17224 -34.86310 -34.04977 -32.50414 -31.51146 -31.19913 -29.72934 -27.60243 -26.33543 -24.65460 -23.13576 -22.56147 -22.26242 -21.88241 -21.70431 -19.61087 -18.45482 -18.12233 -17.46398 -17.29485 -16.68395 -16.48581 -16.48206 -15.86779 -15.69082 -15.43429 -15.12148 -15.05602 -14.92254 -14.38418 -14.32484 -14.15912 -14.11336 -13.46655 -13.33739 -13.21580 -12.96576 -12.66024 -12.52344 -12.35917 -12.25507 -11.95187 -11.81862 -11.70168 -11.52486 -11.25757 -10.68991 -10.61982 -10.46883 -9.98100 -9.81699 -9.76136 -9.01962 -8.24701 -6.34978 -0.40115 0.26957 0.38597 0.92394 1.40734 1.41519 1.54807 1.75996 2.09528 2.40570 2.63338 3.05037 3.09086 3.10168 3.34889 3.42061 3.72559 3.91320 4.05446 4.17373 4.23079 4.28576 4.35544 4.47428 4.48152 4.50725 4.61620 4.70888 4.81429 4.84977 4.89157 5.01167 5.09078 5.27351 5.29597 5.33405 5.48452 5.49238 5.50177 5.52973 5.54296 5.58167 5.71363 5.77608 5.95650 5.97182 6.00421 6.16161 6.78286 7.04469 7.34374 7.52663 8.87507 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.016419 B = 0.002610 C = 0.002349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1704.939439 B =10726.291613 C =11917.000533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.007 3.993 3 Si 0.965 3.035 4 H -0.266 1.266 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.545 4.545 8 H 0.059 0.941 9 C 0.024 3.976 10 C 0.162 3.838 11 N -0.732 5.732 12 C 0.702 3.298 13 O -0.631 6.631 14 N -0.718 5.718 15 C 0.246 3.754 16 C -0.122 4.122 17 C -0.104 4.104 18 C -0.121 4.121 19 C -0.111 4.111 20 C -0.099 4.099 21 C -0.065 4.065 22 C -0.058 4.058 23 C -0.100 4.100 24 C -0.106 4.106 25 C -0.114 4.114 26 C -0.094 4.094 27 C -0.121 4.121 28 H 0.266 0.734 29 H 0.009 0.991 30 H 0.008 0.992 31 H 0.043 0.957 32 H 0.045 0.955 33 H 0.406 0.594 34 H 0.409 0.591 35 H 0.087 0.913 36 H 0.101 0.899 37 H 0.143 0.857 38 H 0.160 0.840 39 H 0.153 0.847 40 H 0.148 0.852 41 H 0.159 0.841 42 H 0.154 0.846 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.012 -29.249 2.217 29.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.192 4.192 3 Si 0.790 3.210 4 H -0.190 1.190 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.583 4.583 8 H 0.077 0.923 9 C -0.013 4.013 10 C 0.038 3.962 11 N -0.386 5.386 12 C 0.402 3.598 13 O -0.512 6.512 14 N -0.373 5.373 15 C 0.141 3.859 16 C -0.124 4.124 17 C -0.123 4.123 18 C -0.138 4.138 19 C -0.128 4.128 20 C -0.116 4.116 21 C -0.065 4.065 22 C -0.058 4.058 23 C -0.118 4.118 24 C -0.124 4.124 25 C -0.131 4.131 26 C -0.113 4.113 27 C -0.122 4.122 28 H 0.075 0.925 29 H 0.027 0.973 30 H 0.026 0.974 31 H 0.061 0.939 32 H 0.063 0.937 33 H 0.241 0.759 34 H 0.245 0.755 35 H 0.105 0.895 36 H 0.119 0.881 37 H 0.161 0.839 38 H 0.178 0.822 39 H 0.171 0.829 40 H 0.165 0.835 41 H 0.177 0.823 42 H 0.172 0.828 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -1.047 -29.087 2.197 29.189 hybrid contribution -0.275 1.519 -0.072 1.546 sum -1.322 -27.568 2.124 27.681 Atomic orbital electron populations 1.70069 1.07537 1.27936 1.51089 1.25873 0.95806 1.03102 0.94413 0.85388 0.78958 0.78727 0.77924 1.18982 1.20162 1.20181 1.21482 0.93592 0.91853 1.51419 0.92301 1.19124 0.94210 0.91662 0.96312 1.21082 0.94591 0.80901 0.99629 1.45223 1.10362 1.04350 1.78666 1.16103 0.85217 0.81007 0.77463 1.90861 1.13335 1.87078 1.59969 1.44839 1.09889 1.02667 1.79934 1.18446 0.94611 0.80794 0.92011 1.20669 0.99388 0.96579 0.95745 1.20584 0.98553 0.99678 0.93459 1.21471 0.99931 0.96128 0.96311 1.21425 0.96352 0.94903 1.00154 1.21204 0.98865 1.00708 0.90852 1.19455 0.98077 0.95032 0.93963 1.19359 0.98273 0.96095 0.92089 1.21179 0.96148 0.96195 0.98234 1.21478 0.98785 0.99888 0.92260 1.21525 0.97748 0.92900 1.00956 1.20653 0.97048 0.99013 0.94554 1.20229 1.00387 0.96045 0.95533 0.92536 0.97285 0.97414 0.93865 0.93703 0.75890 0.75488 0.89488 0.88060 0.83923 0.82249 0.82916 0.83456 0.82310 0.82837 0.85390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.77 13.29 21.45 0.28 -54.49 16 2 C 0.01 0.38 5.46 84.65 0.46 0.84 16 3 Si 0.97 44.07 29.54 68.60 2.03 46.10 16 4 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 5 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 6 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 7 C -0.54 -30.89 9.11 25.60 0.23 -30.66 16 8 H 0.06 3.28 7.74 -2.91 -0.02 3.25 16 9 C 0.02 1.26 5.09 29.85 0.15 1.41 16 10 C 0.16 7.25 5.61 86.38 0.48 7.73 16 11 N -0.73 -27.03 5.56 -478.52 -2.66 -29.69 16 12 C 0.70 25.83 8.56 179.06 1.53 27.37 16 13 O -0.63 -28.05 15.69 -4.01 -0.06 -28.11 16 14 N -0.72 -20.59 5.10 -464.39 -2.37 -22.96 16 15 C 0.25 6.91 3.21 43.63 0.14 7.05 16 16 C -0.12 -3.42 5.92 -19.65 -0.12 -3.53 16 17 C -0.10 -2.99 10.03 22.22 0.22 -2.77 16 18 C -0.12 -2.63 10.05 22.32 0.22 -2.40 16 19 C -0.11 -1.88 10.02 22.22 0.22 -1.66 16 20 C -0.10 -1.74 10.09 22.53 0.23 -1.52 16 21 C -0.06 -1.48 6.20 -20.01 -0.12 -1.60 16 22 C -0.06 -1.19 6.20 -20.01 -0.12 -1.31 16 23 C -0.10 -1.44 10.09 22.53 0.23 -1.21 16 24 C -0.11 -1.23 10.02 22.22 0.22 -1.00 16 25 C -0.11 -1.50 10.05 22.32 0.22 -1.28 16 26 C -0.09 -1.74 10.04 22.21 0.22 -1.51 16 27 C -0.12 -2.74 5.80 -19.65 -0.11 -2.85 16 28 H 0.27 14.70 8.31 -92.70 -0.77 13.93 16 29 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 31 H 0.04 2.02 8.14 -2.39 -0.02 2.00 16 32 H 0.04 2.08 8.14 -2.39 -0.02 2.07 16 33 H 0.41 12.92 8.49 -92.71 -0.79 12.13 16 34 H 0.41 9.71 8.63 -92.71 -0.80 8.91 16 35 H 0.09 2.83 7.56 -2.38 -0.02 2.81 16 36 H 0.10 3.43 7.75 -2.91 -0.02 3.40 16 37 H 0.14 2.51 8.06 -2.91 -0.02 2.49 16 38 H 0.16 1.59 8.06 -2.91 -0.02 1.57 16 39 H 0.15 1.68 8.06 -2.92 -0.02 1.66 16 40 H 0.15 1.36 8.06 -2.91 -0.02 1.34 16 41 H 0.16 0.82 8.06 -2.91 -0.02 0.79 16 42 H 0.15 1.22 8.06 -2.91 -0.02 1.19 16 43 H 0.13 2.24 8.06 -2.91 -0.02 2.22 16 Total: -1.00 -72.59 369.52 1.00 -71.59 By element: Atomic # 1 Polarization: 27.01 SS G_CDS: -0.54 Total: 26.47 kcal Atomic # 6 Polarization: -13.23 SS G_CDS: 4.32 Total: -8.91 kcal Atomic # 7 Polarization: -102.39 SS G_CDS: -4.74 Total: -107.14 kcal Atomic # 8 Polarization: -28.05 SS G_CDS: -0.06 Total: -28.11 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Total: -72.59 1.00 -71.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001190056388.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.021 kcal (2) G-P(sol) polarization free energy of solvation -72.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.591 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds