Wall clock time and date at job start Tue Mar 31 2020 13:17:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86800 * 119.99543 * 2 1 4 4 H 1.48506 * 109.47192 * 0.02562 * 3 2 1 5 5 H 1.48504 * 109.47320 * 120.00001 * 3 2 1 6 6 H 1.48500 * 109.47454 * 240.00067 * 3 2 1 7 7 C 1.39922 * 120.00391 * 180.27833 * 2 1 3 8 8 H 1.07996 * 120.00332 * 149.95149 * 7 2 1 9 9 C 1.41413 * 120.00069 * 329.94545 * 7 2 1 10 10 C 1.40779 * 120.20850 * 333.43106 * 9 7 2 11 11 C 1.37640 * 119.88134 * 179.76308 * 10 9 7 12 12 C 1.38534 * 120.32286 * 0.51327 * 11 10 9 13 13 C 1.39249 * 120.42898 * 359.74435 * 12 11 10 14 14 N 1.39954 * 119.94713 * 180.02562 * 13 12 11 15 15 C 1.34782 * 119.99649 * 213.60881 * 14 13 12 16 16 O 1.21587 * 120.00084 * 4.72563 * 15 14 13 17 17 N 1.34769 * 119.99706 * 184.72499 * 15 14 13 18 18 C 1.46499 * 119.99991 * 179.97438 * 17 15 14 19 19 H 1.09004 * 110.27197 * 327.08366 * 18 17 15 20 20 C 1.54347 * 110.30937 * 205.00065 * 18 17 15 21 21 C 1.54342 * 102.39331 * 214.73103 * 20 18 17 22 22 C 1.51365 * 105.17384 * 26.34716 * 21 20 18 23 23 C 1.38494 * 130.39610 * 162.79281 * 22 21 20 24 24 C 1.38108 * 120.21788 * 180.02562 * 23 22 21 25 25 C 1.38256 * 119.93134 * 0.02562 * 24 23 22 26 26 C 1.38097 * 119.93860 * 359.97438 * 25 24 23 27 27 C 1.38218 * 109.75696 * 342.81629 * 22 21 20 28 28 C 1.38275 * 120.10140 * 359.97438 * 13 12 11 29 29 H 0.97009 * 119.99883 * 173.38402 * 1 2 3 30 30 H 1.08001 * 120.05955 * 0.02562 * 10 9 7 31 31 H 1.08000 * 119.84242 * 180.25691 * 11 10 9 32 32 H 1.08003 * 119.78701 * 179.76151 * 12 11 10 33 33 H 0.96997 * 120.00186 * 33.60036 * 14 13 12 34 34 H 0.96995 * 120.00417 * 0.02562 * 17 15 14 35 35 H 1.08995 * 110.81915 * 332.95943 * 20 18 17 36 36 H 1.09003 * 110.81917 * 96.30554 * 20 18 17 37 37 H 1.09004 * 110.30068 * 145.27112 * 21 20 18 38 38 H 1.09000 * 110.30272 * 267.32227 * 21 20 18 39 39 H 1.07997 * 119.89621 * 0.02921 * 23 22 21 40 40 H 1.07998 * 120.03256 * 179.97438 * 24 23 22 41 41 H 1.08005 * 120.02903 * 179.97438 * 25 24 23 42 42 H 1.08000 * 119.89545 * 179.97438 * 26 25 24 43 43 H 1.08000 * 120.15529 * 179.97438 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 1.2770 2.7465 0.0006 5 1 3.0959 1.6966 1.2125 6 1 3.0959 1.6966 -1.2125 7 6 2.0080 -1.2117 -0.0059 8 1 2.9791 -1.2723 -0.4745 9 6 1.4436 -2.3571 0.6019 10 6 0.5179 -2.2175 1.6533 11 6 -0.0310 -3.3368 2.2368 12 6 0.3310 -4.6012 1.8016 13 6 1.2495 -4.7547 0.7663 14 7 1.6076 -6.0368 0.3343 15 6 2.8593 -6.2746 -0.1054 16 8 3.7009 -5.3991 -0.0467 17 7 3.1780 -7.4829 -0.6101 18 6 4.5383 -7.7413 -1.0886 19 1 4.9693 -6.8330 -1.5100 20 6 4.5305 -8.8692 -2.1421 21 6 5.8661 -9.5911 -1.8645 22 6 6.1655 -9.3230 -0.4052 23 6 7.0363 -9.9589 0.4640 24 6 7.1444 -9.5345 1.7738 25 6 6.3808 -8.4717 2.2198 26 6 5.5119 -7.8363 1.3547 27 6 5.4026 -8.2602 0.0407 28 6 1.8075 -3.6422 0.1637 29 1 -0.4850 -0.8345 -0.0968 30 1 0.2356 -1.2339 1.9986 31 1 -0.7442 -3.2290 3.0405 32 1 -0.1021 -5.4737 2.2682 33 1 0.9551 -6.7543 0.3515 34 1 2.5065 -8.1813 -0.6573 35 1 3.6868 -9.5409 -1.9842 36 1 4.5117 -8.4569 -3.1510 37 1 5.7604 -10.6620 -2.0383 38 1 6.6553 -9.1822 -2.4954 39 1 7.6328 -10.7894 0.1164 40 1 7.8241 -10.0328 2.4491 41 1 6.4638 -8.1388 3.2439 42 1 4.9155 -7.0065 1.7040 43 1 2.5202 -3.7602 -0.6391 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192993014.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:17:10 Heat of formation + Delta-G solvation = -8.601400 kcal Electronic energy + Delta-G solvation = -25868.647477 eV Core-core repulsion = 22262.781729 eV Total energy + Delta-G solvation = -3605.865748 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.85205 -40.81051 -39.27267 -37.18769 -36.35111 -35.05133 -34.44584 -31.91606 -31.64623 -30.09307 -29.70903 -27.41509 -27.04342 -23.74335 -23.66938 -22.91295 -22.07692 -21.78626 -21.50986 -20.07175 -19.39815 -17.99418 -17.43447 -17.07164 -16.59299 -16.35501 -16.14762 -15.98814 -15.79074 -15.57241 -15.41875 -14.82124 -14.55308 -14.27983 -14.06045 -13.89205 -13.79242 -13.64284 -13.39271 -12.82077 -12.76973 -12.69054 -12.36410 -12.35351 -12.21878 -11.96248 -11.90936 -11.79892 -11.57535 -11.27311 -10.92743 -10.84185 -10.23176 -9.78457 -9.62022 -9.53063 -9.25106 -8.81585 -6.47840 0.34043 0.41829 0.79227 0.92559 1.47403 1.58110 1.64928 1.78764 2.10289 2.30947 2.64394 2.79386 3.21099 3.37752 3.53338 3.60745 4.02616 4.08950 4.12147 4.17932 4.29212 4.33084 4.54304 4.55759 4.61810 4.73115 4.77892 4.86242 4.94427 4.97359 5.04750 5.06237 5.10921 5.14630 5.17387 5.40224 5.52537 5.53600 5.57517 5.59828 5.68417 5.77030 5.82981 5.88683 6.05702 6.09882 6.26723 6.38759 6.81442 6.89994 7.03173 7.53073 7.99392 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.017494 B = 0.002826 C = 0.002749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1600.168772 B = 9906.911367 C =10183.448863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.805 5.805 2 C 0.013 3.987 3 Si 1.113 2.887 4 H -0.262 1.262 5 H -0.267 1.267 6 H -0.262 1.262 7 C -0.569 4.569 8 H 0.056 0.944 9 C 0.084 3.916 10 C -0.249 4.249 11 C -0.068 4.068 12 C -0.262 4.262 13 C 0.191 3.809 14 N -0.671 5.671 15 C 0.695 3.305 16 O -0.615 6.615 17 N -0.717 5.717 18 C 0.194 3.806 19 H 0.072 0.928 20 C -0.112 4.112 21 C -0.073 4.073 22 C -0.095 4.095 23 C -0.112 4.112 24 C -0.115 4.115 25 C -0.138 4.138 26 C -0.113 4.113 27 C -0.130 4.130 28 C -0.242 4.242 29 H 0.283 0.717 30 H 0.088 0.912 31 H 0.129 0.871 32 H 0.134 0.866 33 H 0.418 0.582 34 H 0.413 0.587 35 H 0.100 0.900 36 H 0.099 0.901 37 H 0.107 0.893 38 H 0.094 0.906 39 H 0.152 0.848 40 H 0.151 0.849 41 H 0.128 0.872 42 H 0.081 0.919 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.473 -22.967 -2.146 24.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.427 5.427 2 C -0.205 4.205 3 Si 0.929 3.071 4 H -0.186 1.186 5 H -0.191 1.191 6 H -0.186 1.186 7 C -0.597 4.597 8 H 0.074 0.926 9 C 0.081 3.919 10 C -0.269 4.269 11 C -0.087 4.087 12 C -0.283 4.283 13 C 0.096 3.904 14 N -0.319 5.319 15 C 0.395 3.605 16 O -0.494 6.494 17 N -0.373 5.373 18 C 0.089 3.911 19 H 0.090 0.910 20 C -0.150 4.150 21 C -0.110 4.110 22 C -0.096 4.096 23 C -0.130 4.130 24 C -0.133 4.133 25 C -0.156 4.156 26 C -0.132 4.132 27 C -0.131 4.131 28 C -0.264 4.264 29 H 0.094 0.906 30 H 0.106 0.894 31 H 0.146 0.854 32 H 0.152 0.848 33 H 0.256 0.744 34 H 0.251 0.749 35 H 0.119 0.881 36 H 0.117 0.883 37 H 0.125 0.875 38 H 0.112 0.888 39 H 0.170 0.830 40 H 0.169 0.831 41 H 0.146 0.854 42 H 0.100 0.900 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 8.969 -20.616 -2.093 22.580 hybrid contribution -0.510 -1.649 0.210 1.739 sum 8.458 -22.265 -1.884 23.892 Atomic orbital electron populations 1.70568 1.08692 1.32952 1.30491 1.28352 0.95627 1.07034 0.89459 0.83087 0.74974 0.70067 0.78942 1.18634 1.19147 1.18604 1.20634 1.05696 0.96610 1.36753 0.92581 1.17823 0.90787 0.92559 0.90759 1.21076 1.06751 0.97631 1.01471 1.20768 0.97823 0.91898 0.98187 1.20417 1.08066 0.97505 1.02359 1.17333 0.96387 0.82802 0.93837 1.42374 1.11740 1.10754 1.67069 1.16227 0.82314 0.83516 0.78396 1.90968 1.49769 1.46373 1.62269 1.44995 1.13597 1.12178 1.66507 1.20519 0.79605 0.99077 0.91889 0.91042 1.22632 0.99297 0.95123 0.97971 1.21077 0.96883 1.02869 0.90161 1.20893 0.96313 0.94994 0.97391 1.20987 0.98433 1.00671 0.92858 1.21402 0.99032 0.96287 0.96563 1.21262 0.96985 0.97359 0.99945 1.20666 0.99259 0.99151 0.94125 1.21032 0.99836 0.97826 0.94451 1.20906 1.08734 0.92080 1.04705 0.90601 0.89362 0.85362 0.84790 0.74412 0.74907 0.88144 0.88273 0.87459 0.88769 0.83016 0.83090 0.85360 0.90016 0.89956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -45.30 12.42 21.82 0.27 -45.03 16 2 C 0.01 0.69 4.80 85.25 0.41 1.10 16 3 Si 1.11 46.54 30.02 68.60 2.06 48.60 16 4 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 5 H -0.27 -10.74 7.11 99.48 0.71 -10.04 16 6 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 7 C -0.57 -34.15 8.93 23.46 0.21 -33.94 16 8 H 0.06 3.45 8.00 -2.91 -0.02 3.42 16 9 C 0.08 4.94 5.23 -21.31 -0.11 4.82 16 10 C -0.25 -13.53 8.16 22.75 0.19 -13.35 16 11 C -0.07 -3.11 10.02 22.20 0.22 -2.89 16 12 C -0.26 -11.10 9.97 22.58 0.23 -10.88 16 13 C 0.19 8.80 6.27 38.10 0.24 9.04 16 14 N -0.67 -23.94 5.35 -317.32 -1.70 -25.64 16 15 C 0.69 26.05 8.02 179.06 1.44 27.48 16 16 O -0.61 -30.26 13.46 -3.99 -0.05 -30.31 16 17 N -0.72 -18.47 5.09 -458.17 -2.33 -20.80 16 18 C 0.19 4.79 3.21 44.92 0.14 4.93 16 19 H 0.07 2.25 7.56 -2.39 -0.02 2.23 16 20 C -0.11 -1.54 6.76 31.51 0.21 -1.33 16 21 C -0.07 -0.88 6.77 30.52 0.21 -0.68 16 22 C -0.10 -1.83 6.14 -19.60 -0.12 -1.95 16 23 C -0.11 -1.87 10.04 22.30 0.22 -1.64 16 24 C -0.12 -2.11 10.05 22.24 0.22 -1.89 16 25 C -0.14 -3.34 10.05 22.24 0.22 -3.12 16 26 C -0.11 -3.43 10.00 22.30 0.22 -3.21 16 27 C -0.13 -3.39 5.79 -19.59 -0.11 -3.50 16 28 C -0.24 -13.53 8.39 22.85 0.19 -13.34 16 29 H 0.28 16.47 7.17 -92.70 -0.66 15.80 16 30 H 0.09 4.95 6.76 -2.91 -0.02 4.93 16 31 H 0.13 4.90 8.06 -2.91 -0.02 4.88 16 32 H 0.13 4.52 8.06 -2.91 -0.02 4.50 16 33 H 0.42 10.70 8.83 -92.71 -0.82 9.88 16 34 H 0.41 7.23 8.43 -92.71 -0.78 6.45 16 35 H 0.10 0.98 7.82 -2.39 -0.02 0.96 16 36 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 38 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.15 1.52 8.06 -2.91 -0.02 1.49 16 40 H 0.15 1.83 8.06 -2.91 -0.02 1.81 16 41 H 0.13 2.78 8.06 -2.91 -0.02 2.75 16 42 H 0.08 3.06 7.56 -2.91 -0.02 3.03 16 43 H 0.08 4.95 6.40 -2.91 -0.02 4.93 16 Total: -1.00 -78.84 359.49 2.04 -76.80 By element: Atomic # 1 Polarization: 41.15 SS G_CDS: -0.44 Total: 40.71 kcal Atomic # 6 Polarization: -48.56 SS G_CDS: 4.23 Total: -44.33 kcal Atomic # 7 Polarization: -87.71 SS G_CDS: -3.76 Total: -91.47 kcal Atomic # 8 Polarization: -30.26 SS G_CDS: -0.05 Total: -30.31 kcal Atomic # 14 Polarization: 46.54 SS G_CDS: 2.06 Total: 48.60 kcal Total: -78.84 2.04 -76.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192993014.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.198 kcal (2) G-P(sol) polarization free energy of solvation -78.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds