Wall clock time and date at job start Tue Mar 31 2020 13:17:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30854 * 1 3 3 Si 1.86805 * 120.00407 * 2 1 4 4 H 1.48494 * 109.47165 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46978 * 300.00845 * 3 2 1 6 6 H 1.48501 * 109.46754 * 60.00447 * 3 2 1 7 7 C 1.39948 * 120.00040 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00336 * 175.67570 * 7 2 1 9 9 C 1.41075 * 119.99885 * 355.66573 * 7 2 1 10 10 C 1.40739 * 120.29973 * 34.71715 * 9 7 2 11 11 C 1.36462 * 119.94527 * 180.02562 * 10 9 7 12 12 C 1.38870 * 120.57465 * 0.02915 * 11 10 9 13 13 C 1.38219 * 120.61812 * 359.69187 * 12 11 10 14 14 C 1.38651 * 120.02808 * 0.56025 * 13 12 11 15 15 N 1.39137 * 120.28109 * 179.74528 * 14 13 12 16 16 C 1.34778 * 119.99700 * 34.53344 * 15 14 13 17 17 O 1.21582 * 120.00565 * 356.09520 * 16 15 14 18 18 N 1.34783 * 119.99813 * 175.81595 * 16 15 14 19 19 C 1.46499 * 120.00022 * 180.02562 * 18 16 15 20 20 H 1.09003 * 110.26733 * 324.38361 * 19 18 16 21 21 C 1.54343 * 110.30043 * 202.20463 * 19 18 16 22 22 C 1.54347 * 102.39324 * 267.42155 * 21 19 18 23 23 C 1.51375 * 105.16664 * 333.65718 * 22 21 19 24 24 C 1.38501 * 130.38492 * 197.18156 * 23 22 21 25 25 C 1.38109 * 120.20953 * 180.02562 * 24 23 22 26 26 C 1.38253 * 119.93616 * 359.97438 * 25 24 23 27 27 C 1.38098 * 119.93484 * 359.97438 * 26 25 24 28 28 C 1.38211 * 109.75960 * 17.18418 * 23 22 21 29 29 H 0.97001 * 119.99531 * 359.97438 * 1 2 3 30 30 H 1.07996 * 120.02501 * 0.02562 * 10 9 7 31 31 H 1.08000 * 119.71645 * 179.97438 * 11 10 9 32 32 H 1.08003 * 119.69200 * 179.97438 * 12 11 10 33 33 H 1.07998 * 119.98477 * 180.30240 * 13 12 11 34 34 H 0.96998 * 120.00282 * 214.53728 * 15 14 13 35 35 H 0.96998 * 119.99379 * 0.02562 * 18 16 15 36 36 H 1.08996 * 110.82515 * 25.65217 * 21 19 18 37 37 H 1.08998 * 110.82117 * 149.20091 * 21 19 18 38 38 H 1.08993 * 110.30896 * 214.73305 * 22 21 19 39 39 H 1.09007 * 110.38515 * 92.61772 * 22 21 19 40 40 H 1.07995 * 119.89671 * 0.02562 * 24 23 22 41 41 H 1.08004 * 120.02603 * 180.02562 * 25 24 23 42 42 H 1.07998 * 120.03465 * 180.02562 * 26 25 24 43 43 H 1.08008 * 119.89533 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 3.7026 1.3463 -0.0006 5 1 1.8838 2.3965 -1.2124 6 1 1.8840 2.3963 1.2126 7 6 2.0083 -1.2120 -0.0005 8 1 3.0860 -1.2133 -0.0711 9 6 1.3059 -2.4320 0.0912 10 6 0.0434 -2.5718 -0.5147 11 6 -0.6299 -3.7550 -0.4209 12 6 -0.0807 -4.8275 0.2695 13 6 1.1600 -4.7180 0.8686 14 6 1.8639 -3.5258 0.7936 15 7 3.1110 -3.4080 1.3993 16 6 3.9432 -4.4674 1.4395 17 8 3.5775 -5.5446 1.0105 18 7 5.1831 -4.3313 1.9503 19 6 6.0880 -5.4826 1.9935 20 1 5.5278 -6.3957 2.1951 21 6 7.1744 -5.2698 3.0690 22 6 8.3204 -4.6267 2.2595 23 6 8.1252 -5.1152 0.8400 24 6 9.0009 -5.1281 -0.2329 25 6 8.5962 -5.6303 -1.4542 26 6 7.3132 -6.1223 -1.6069 27 6 6.4390 -6.1111 -0.5379 28 6 6.8426 -5.6070 0.6873 29 1 -0.4849 0.8401 0.0004 30 1 -0.3922 -1.7433 -1.0534 31 1 -1.5988 -3.8581 -0.8869 32 1 -0.6262 -5.7573 0.3351 33 1 1.5796 -5.5601 1.3988 34 1 3.3814 -2.5636 1.7925 35 1 5.4762 -3.4710 2.2892 36 1 6.8220 -4.5925 3.8470 37 1 7.4887 -6.2221 3.4960 38 1 9.2858 -4.9560 2.6434 39 1 8.2493 -3.5396 2.2984 40 1 10.0033 -4.7444 -0.1142 41 1 9.2816 -5.6393 -2.2888 42 1 6.9952 -6.5157 -2.5611 43 1 5.4368 -6.4953 -0.6581 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192995159.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:17:13 Heat of formation + Delta-G solvation = 18.528696 kcal Electronic energy + Delta-G solvation = -26356.451585 eV Core-core repulsion = 22751.762287 eV Total energy + Delta-G solvation = -3604.689298 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.54291 -39.32207 -37.36311 -36.01211 -33.67254 -33.59606 -33.01623 -30.92274 -29.52862 -29.00680 -28.26637 -26.47251 -25.09611 -22.72045 -21.99140 -21.01285 -20.88835 -20.41383 -19.78381 -17.85443 -17.22460 -16.83149 -16.00240 -15.64456 -15.21185 -15.11955 -14.97392 -14.50898 -14.21679 -13.97282 -13.80501 -13.25599 -13.15572 -12.88561 -12.68196 -12.61947 -12.29543 -11.87054 -11.71326 -11.45901 -11.34434 -11.20821 -11.17904 -11.15012 -10.89188 -10.78107 -10.43507 -10.10473 -9.72521 -9.38382 -9.21719 -8.93075 -8.79998 -8.73359 -8.56901 -7.24572 -6.88386 -6.56897 -4.39947 1.33272 1.44860 2.73629 2.97689 3.05865 3.09117 3.20918 3.25388 3.87136 3.87294 3.93445 4.25426 4.52258 4.69829 4.83874 4.93257 4.97739 5.06283 5.11682 5.20165 5.49978 5.55777 5.65951 5.67593 5.73441 5.78285 5.87056 6.04278 6.18187 6.36361 6.46739 6.56458 6.58868 6.61344 6.70768 6.78164 6.98649 7.05095 7.12853 7.17479 7.35168 7.49827 7.73832 7.86327 8.11749 8.16426 8.24887 8.63848 8.67038 8.91476 8.95048 9.29092 10.27136 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.012346 B = 0.003817 C = 0.003393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2267.347478 B = 7334.464882 C = 8250.578838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.809 5.809 2 C 0.073 3.927 3 Si 0.911 3.089 4 H -0.264 1.264 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.469 4.469 8 H 0.073 0.927 9 C 0.093 3.907 10 C -0.138 4.138 11 C -0.123 4.123 12 C -0.214 4.214 13 C -0.095 4.095 14 C 0.045 3.955 15 N -0.655 5.655 16 C 0.697 3.303 17 O -0.584 6.584 18 N -0.741 5.741 19 C 0.204 3.796 20 H 0.095 0.905 21 C -0.126 4.126 22 C -0.082 4.082 23 C -0.093 4.093 24 C -0.117 4.117 25 C -0.116 4.116 26 C -0.126 4.126 27 C -0.079 4.079 28 C -0.107 4.107 29 H 0.277 0.723 30 H 0.130 0.870 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.111 0.889 34 H 0.399 0.601 35 H 0.393 0.607 36 H 0.085 0.915 37 H 0.086 0.914 38 H 0.076 0.924 39 H 0.080 0.920 40 H 0.116 0.884 41 H 0.120 0.880 42 H 0.122 0.878 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.481 -5.493 4.010 16.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.437 5.437 2 C -0.142 4.142 3 Si 0.736 3.264 4 H -0.188 1.188 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.500 4.500 8 H 0.091 0.909 9 C 0.089 3.911 10 C -0.158 4.158 11 C -0.142 4.142 12 C -0.234 4.234 13 C -0.116 4.116 14 C -0.049 4.049 15 N -0.299 5.299 16 C 0.398 3.602 17 O -0.462 6.462 18 N -0.397 5.397 19 C 0.098 3.902 20 H 0.113 0.887 21 C -0.164 4.164 22 C -0.119 4.119 23 C -0.094 4.094 24 C -0.135 4.135 25 C -0.135 4.135 26 C -0.145 4.145 27 C -0.098 4.098 28 C -0.108 4.108 29 H 0.088 0.912 30 H 0.148 0.852 31 H 0.106 0.894 32 H 0.107 0.893 33 H 0.129 0.871 34 H 0.234 0.766 35 H 0.227 0.773 36 H 0.103 0.897 37 H 0.105 0.895 38 H 0.094 0.906 39 H 0.098 0.902 40 H 0.134 0.866 41 H 0.138 0.862 42 H 0.140 0.860 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 14.961 -6.304 3.640 16.638 hybrid contribution 0.588 1.705 0.140 1.808 sum 15.548 -4.599 3.780 16.649 Atomic orbital electron populations 1.69778 1.07210 1.28513 1.38170 1.25826 0.94869 1.00913 0.92583 0.86220 0.80480 0.81221 0.78472 1.18758 1.20004 1.20016 1.19295 0.94450 0.90012 1.46258 0.90896 1.17459 0.93262 0.91488 0.88921 1.21165 0.96415 0.96396 1.01873 1.20531 0.98583 0.94393 1.00711 1.20374 0.97249 0.98178 1.07628 1.20675 0.93760 0.96515 1.00621 1.17666 0.86244 0.97545 1.03436 1.41992 1.15858 1.12773 1.59313 1.16039 0.80142 0.85005 0.79046 1.90845 1.76006 1.26072 1.53321 1.45139 1.13095 1.12958 1.68483 1.20032 0.89326 0.90221 0.90608 0.88665 1.22579 0.94588 1.02210 0.97051 1.21069 0.99264 1.00650 0.90941 1.20578 0.94586 0.98734 0.95498 1.20534 0.99151 1.01435 0.92419 1.21030 0.96352 0.99076 0.97007 1.21097 0.93907 1.00736 0.98714 1.20889 0.99894 0.97439 0.91565 1.20901 0.94793 0.99269 0.95885 0.91219 0.85201 0.89409 0.89264 0.87112 0.76633 0.77318 0.89652 0.89501 0.90566 0.90165 0.86573 0.86158 0.86008 0.85412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -20.53 10.60 55.55 0.59 -19.94 16 2 C 0.07 1.79 5.42 -17.33 -0.09 1.70 16 3 Si 0.91 18.33 29.56 -169.99 -5.03 13.30 16 4 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 5 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 6 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 7 C -0.47 -11.92 8.23 -37.87 -0.31 -12.23 16 8 H 0.07 1.79 7.64 -52.48 -0.40 1.39 16 9 C 0.09 2.42 5.56 -106.65 -0.59 1.83 16 10 C -0.14 -3.61 8.62 -39.28 -0.34 -3.95 16 11 C -0.12 -2.96 9.97 -39.99 -0.40 -3.36 16 12 C -0.21 -5.06 10.04 -39.35 -0.39 -5.46 16 13 C -0.10 -2.32 8.68 -39.44 -0.34 -2.67 16 14 C 0.05 1.11 6.34 -83.17 -0.53 0.58 16 15 N -0.65 -13.54 4.96 -13.83 -0.07 -13.61 16 16 C 0.70 13.51 8.39 -86.91 -0.73 12.78 16 17 O -0.58 -13.11 13.26 5.29 0.07 -13.04 16 18 N -0.74 -10.74 5.11 -58.79 -0.30 -11.04 16 19 C 0.20 2.65 3.17 -68.05 -0.22 2.43 16 20 H 0.10 1.38 7.64 -51.93 -0.40 0.98 16 21 C -0.13 -1.12 6.66 -25.32 -0.17 -1.29 16 22 C -0.08 -0.73 6.77 -26.85 -0.18 -0.91 16 23 C -0.09 -1.11 6.14 -104.20 -0.64 -1.75 16 24 C -0.12 -1.32 10.04 -39.53 -0.40 -1.72 16 25 C -0.12 -1.34 10.05 -39.62 -0.40 -1.74 16 26 C -0.13 -1.65 10.05 -39.63 -0.40 -2.05 16 27 C -0.08 -1.20 10.04 -39.53 -0.40 -1.60 16 28 C -0.11 -1.50 5.76 -104.21 -0.60 -2.10 16 29 H 0.28 6.44 8.30 -40.82 -0.34 6.10 16 30 H 0.13 3.49 6.14 -52.49 -0.32 3.17 16 31 H 0.09 1.88 8.06 -52.49 -0.42 1.46 16 32 H 0.09 1.88 8.06 -52.48 -0.42 1.46 16 33 H 0.11 2.68 6.20 -52.49 -0.33 2.36 16 34 H 0.40 7.42 8.14 -40.82 -0.33 7.09 16 35 H 0.39 4.69 8.60 -40.82 -0.35 4.34 16 36 H 0.08 0.65 8.04 -51.93 -0.42 0.23 16 37 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 41 H 0.12 1.08 8.06 -52.48 -0.42 0.66 16 42 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 43 H 0.13 2.17 7.86 -52.48 -0.41 1.75 16 LS Contribution 357.98 15.07 5.39 5.39 Total: -1.00 -30.32 357.98 -11.94 -42.26 By element: Atomic # 1 Polarization: 23.66 SS G_CDS: -5.48 Total: 18.18 kcal Atomic # 6 Polarization: -14.38 SS G_CDS: -7.12 Total: -21.51 kcal Atomic # 7 Polarization: -44.81 SS G_CDS: 0.22 Total: -44.59 kcal Atomic # 8 Polarization: -13.11 SS G_CDS: 0.07 Total: -13.04 kcal Atomic # 14 Polarization: 18.33 SS G_CDS: -5.03 Total: 13.30 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -30.32 -11.94 -42.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192995159.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.787 kcal (2) G-P(sol) polarization free energy of solvation -30.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.259 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds