Wall clock time and date at job start Tue Mar 31 2020 13:58:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31316 * 1 3 3 Si 1.86802 * 119.99818 * 2 1 4 4 H 1.48498 * 109.47216 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.47074 * 299.99838 * 3 2 1 6 6 H 1.48500 * 109.47456 * 59.99814 * 3 2 1 7 7 C 1.39104 * 120.00434 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00581 * 185.73282 * 7 2 1 9 9 N 1.36783 * 119.99842 * 5.73696 * 7 2 1 10 10 C 1.46499 * 120.00125 * 46.03283 * 9 7 2 11 11 C 1.50700 * 109.47513 * 94.00339 * 10 9 7 12 12 C 1.38232 * 119.99905 * 85.76409 * 11 10 9 13 13 C 1.38241 * 119.99916 * 179.97438 * 12 11 10 14 14 C 1.38231 * 120.00153 * 0.06838 * 13 12 11 15 15 C 1.38242 * 120.00017 * 359.91189 * 14 13 12 16 16 C 1.38234 * 119.99751 * 265.74732 * 11 10 9 17 17 C 1.34778 * 120.00061 * 226.03270 * 9 7 2 18 18 O 1.21569 * 120.00116 * 175.60726 * 17 9 7 19 19 C 1.48002 * 119.99974 * 355.60575 * 17 9 7 20 20 C 1.39410 * 119.73107 * 185.86682 * 19 17 9 21 21 C 1.38542 * 119.05253 * 179.79919 * 20 19 17 22 22 C 1.38666 * 118.49591 * 0.46727 * 21 20 19 23 23 C 1.50705 * 120.31056 * 179.72936 * 22 21 20 24 24 C 1.53005 * 117.49458 * 188.64179 * 23 22 21 25 25 C 1.52999 * 60.00110 * 252.51383 * 24 23 22 26 26 C 1.38547 * 119.37345 * 359.75273 * 22 21 20 27 27 N 1.31533 * 120.90815 * 0.02562 * 26 22 21 28 28 H 0.97003 * 120.00265 * 359.97438 * 1 2 3 29 29 H 1.09009 * 109.47054 * 334.00264 * 10 9 7 30 30 H 1.09002 * 109.47291 * 214.00914 * 10 9 7 31 31 H 1.07996 * 119.99837 * 359.70322 * 12 11 10 32 32 H 1.08003 * 119.99593 * 179.97438 * 13 12 11 33 33 H 1.07995 * 120.00043 * 179.97438 * 14 13 12 34 34 H 1.07992 * 120.00082 * 180.02562 * 15 14 13 35 35 H 1.07993 * 120.00759 * 359.97438 * 16 11 10 36 36 H 1.08002 * 120.47664 * 359.97438 * 20 19 17 37 37 H 1.08001 * 120.75391 * 180.19927 * 21 20 19 38 38 H 1.08990 * 115.55403 * 334.35468 * 23 22 21 39 39 H 1.08997 * 117.50184 * 0.02562 * 24 23 22 40 40 H 1.08998 * 117.49414 * 145.02272 * 24 23 22 41 41 H 1.09004 * 117.49952 * 252.51193 * 25 24 23 42 42 H 1.08998 * 117.49626 * 107.49187 * 25 24 23 43 43 H 1.07998 * 119.54823 * 179.97438 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3132 0.0000 0.0000 3 14 2.2471 1.6178 0.0000 4 1 3.7071 1.3465 -0.0006 5 1 1.8883 2.3965 -1.2126 6 1 1.8884 2.3966 1.2124 7 6 2.0088 -1.2046 0.0005 8 1 3.0847 -1.2069 0.0940 9 7 1.3300 -2.3863 -0.1173 10 6 0.2847 -2.5325 -1.1333 11 6 0.8767 -3.1383 -2.3797 12 6 0.9788 -4.5117 -2.4993 13 6 1.5213 -5.0675 -3.6428 14 6 1.9630 -4.2499 -4.6662 15 6 1.8605 -2.8765 -4.5468 16 6 1.3172 -2.3207 -3.4035 17 6 1.6230 -3.4163 0.7011 18 8 0.9669 -4.4385 0.6506 19 6 2.7433 -3.3028 1.6615 20 6 3.1201 -4.4112 2.4184 21 6 4.1735 -4.2904 3.3101 22 6 4.8082 -3.0626 3.4219 23 6 5.9547 -2.8838 4.3836 24 6 6.4755 -1.4623 4.6054 25 6 7.3061 -2.4646 3.8014 26 6 4.3779 -2.0017 2.6416 27 7 3.3779 -2.1445 1.7992 28 1 -0.4851 0.8400 0.0004 29 1 -0.1330 -1.5534 -1.3683 30 1 -0.5036 -3.1819 -0.7527 31 1 0.6388 -5.1503 -1.6974 32 1 1.6014 -6.1405 -3.7360 33 1 2.3871 -4.6841 -5.5594 34 1 2.2051 -2.2378 -5.3465 35 1 1.2368 -1.2478 -3.3105 36 1 2.6001 -5.3515 2.3092 37 1 4.4904 -5.1323 3.9078 38 1 5.9629 -3.5620 5.2367 39 1 5.9886 -0.6565 4.0561 40 1 6.8262 -1.2051 5.6048 41 1 8.2034 -2.8667 4.2719 42 1 7.3659 -2.3181 2.7229 43 1 4.8699 -1.0441 2.7267 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001195616785.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:58:17 Heat of formation + Delta-G solvation = 71.649413 kcal Electronic energy + Delta-G solvation = -26642.753774 eV Core-core repulsion = 23040.367962 eV Total energy + Delta-G solvation = -3602.385811 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.09304 -38.90832 -37.88669 -36.69035 -34.90391 -32.06641 -31.85425 -30.84807 -30.27089 -30.07131 -26.02938 -25.08296 -23.76426 -23.30477 -22.28433 -21.89616 -21.06814 -20.36610 -19.38965 -17.93890 -16.68425 -16.34704 -15.68464 -15.28448 -14.96158 -14.76032 -14.47249 -14.35252 -14.22131 -14.05499 -13.95613 -13.24399 -13.02352 -12.79197 -12.63214 -12.32413 -12.09876 -11.96336 -11.61470 -11.48563 -11.33255 -11.18894 -11.00301 -10.84879 -10.76935 -10.45331 -10.32785 -10.30001 -10.14741 -9.27184 -9.17268 -8.95710 -8.40223 -8.31830 -8.30319 -8.04010 -7.34930 -6.28952 -3.99104 1.26127 1.79140 1.95115 2.01474 3.15486 3.25279 3.30328 3.56755 3.96804 4.12150 4.34600 4.52020 4.67801 4.71721 4.82903 4.96985 5.00204 5.11948 5.22475 5.26159 5.43938 5.49346 5.56480 5.59601 5.65229 5.71832 5.79202 5.90681 5.98111 6.03529 6.11745 6.16439 6.21207 6.25159 6.45153 6.58065 6.62511 6.65391 6.79303 7.05030 7.08222 7.13464 7.20401 7.48069 7.62832 7.69107 7.96984 8.49053 8.62305 9.13271 9.44046 9.87855 10.73608 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.010968 B = 0.004739 C = 0.003904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2552.297205 B = 5906.475099 C = 7169.527489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.038 3.962 3 Si 0.919 3.081 4 H -0.266 1.266 5 H -0.283 1.283 6 H -0.282 1.282 7 C -0.291 4.291 8 H 0.116 0.884 9 N -0.403 5.403 10 C 0.142 3.858 11 C -0.079 4.079 12 C -0.105 4.105 13 C -0.133 4.133 14 C -0.135 4.135 15 C -0.132 4.132 16 C -0.098 4.098 17 C 0.510 3.490 18 O -0.600 6.600 19 C 0.110 3.890 20 C -0.127 4.127 21 C -0.087 4.087 22 C -0.112 4.112 23 C -0.109 4.109 24 C -0.178 4.178 25 C -0.171 4.171 26 C 0.081 3.919 27 N -0.404 5.404 28 H 0.268 0.732 29 H 0.120 0.880 30 H 0.065 0.935 31 H 0.127 0.873 32 H 0.112 0.888 33 H 0.110 0.890 34 H 0.113 0.887 35 H 0.122 0.878 36 H 0.139 0.861 37 H 0.129 0.871 38 H 0.111 0.889 39 H 0.101 0.899 40 H 0.096 0.904 41 H 0.095 0.905 42 H 0.097 0.903 43 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.387 -3.654 1.828 10.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.166 4.166 3 Si 0.746 3.254 4 H -0.190 1.190 5 H -0.209 1.209 6 H -0.208 1.208 7 C -0.421 4.421 8 H 0.133 0.867 9 N -0.117 5.117 10 C 0.019 3.981 11 C -0.081 4.081 12 C -0.123 4.123 13 C -0.151 4.151 14 C -0.153 4.153 15 C -0.150 4.150 16 C -0.116 4.116 17 C 0.299 3.701 18 O -0.487 6.487 19 C -0.028 4.028 20 C -0.149 4.149 21 C -0.112 4.112 22 C -0.114 4.114 23 C -0.128 4.128 24 C -0.214 4.214 25 C -0.208 4.208 26 C -0.078 4.078 27 N -0.114 5.114 28 H 0.078 0.922 29 H 0.138 0.862 30 H 0.084 0.916 31 H 0.145 0.855 32 H 0.130 0.870 33 H 0.129 0.871 34 H 0.131 0.869 35 H 0.140 0.860 36 H 0.157 0.843 37 H 0.147 0.853 38 H 0.129 0.871 39 H 0.119 0.881 40 H 0.115 0.885 41 H 0.114 0.886 42 H 0.115 0.885 43 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 8.574 -3.268 1.248 9.261 hybrid contribution 0.762 0.228 0.653 1.029 sum 9.336 -3.040 1.901 10.001 Atomic orbital electron populations 1.69745 1.06182 1.27522 1.47880 1.25521 0.95223 0.99815 0.96061 0.85974 0.80156 0.81632 0.77633 1.18983 1.20940 1.20825 1.20130 0.93054 0.81584 1.47332 0.86708 1.43339 1.31873 1.11218 1.25320 1.20571 0.90137 1.02972 0.84385 1.20635 0.97818 0.93316 0.96295 1.21353 0.98463 0.95266 0.97245 1.21059 1.00443 0.99089 0.94506 1.20973 1.01653 0.93908 0.98759 1.21048 1.01029 0.94902 0.98067 1.21141 0.97504 1.00013 0.92969 1.18074 0.84923 0.85420 0.81693 1.90592 1.53606 1.31893 1.72585 1.21444 0.95852 0.89071 0.96430 1.22065 0.96780 1.00242 0.95775 1.21186 0.95281 0.96748 0.98018 1.20227 0.97502 0.95207 0.98490 1.20900 0.93032 0.99019 0.99808 1.23069 1.03837 0.92785 1.01745 1.23030 0.93834 1.03525 1.00425 1.22962 0.94408 0.98088 0.92351 1.68854 1.04470 1.23240 1.14810 0.92159 0.86238 0.91626 0.85489 0.87004 0.87146 0.86906 0.86041 0.84281 0.85307 0.87133 0.88084 0.88520 0.88637 0.88495 0.83470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -22.97 11.23 55.50 0.62 -22.34 16 2 C 0.04 0.95 5.21 -17.45 -0.09 0.86 16 3 Si 0.92 19.89 29.56 -169.99 -5.02 14.86 16 4 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 5 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 6 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 7 C -0.29 -7.42 7.55 -15.02 -0.11 -7.53 16 8 H 0.12 2.94 5.88 -52.49 -0.31 2.63 16 9 N -0.40 -10.21 2.47 -117.12 -0.29 -10.50 16 10 C 0.14 3.39 5.04 -5.19 -0.03 3.36 16 11 C -0.08 -1.69 5.43 -104.63 -0.57 -2.26 16 12 C -0.10 -2.10 9.57 -39.58 -0.38 -2.47 16 13 C -0.13 -2.27 10.05 -39.58 -0.40 -2.67 16 14 C -0.13 -2.15 10.05 -39.58 -0.40 -2.55 16 15 C -0.13 -2.22 10.05 -39.58 -0.40 -2.62 16 16 C -0.10 -1.90 9.68 -39.58 -0.38 -2.29 16 17 C 0.51 12.81 7.58 -12.26 -0.09 12.71 16 18 O -0.60 -15.54 14.82 5.31 0.08 -15.46 16 19 C 0.11 2.46 6.66 -83.02 -0.55 1.91 16 20 C -0.13 -2.37 9.63 -39.03 -0.38 -2.75 16 21 C -0.09 -1.32 9.88 -39.31 -0.39 -1.71 16 22 C -0.11 -1.67 5.63 -104.35 -0.59 -2.26 16 23 C -0.11 -1.24 6.06 -91.76 -0.56 -1.80 16 24 C -0.18 -1.80 9.87 -26.73 -0.26 -2.07 16 25 C -0.17 -1.72 10.17 -26.73 -0.27 -1.99 16 26 C 0.08 1.42 10.47 -17.57 -0.18 1.23 16 27 N -0.40 -8.72 6.34 -9.81 -0.06 -8.78 16 28 H 0.27 6.68 8.31 -40.82 -0.34 6.34 16 29 H 0.12 2.99 5.56 -51.92 -0.29 2.71 16 30 H 0.07 1.61 7.46 -51.93 -0.39 1.23 16 31 H 0.13 2.66 7.06 -52.49 -0.37 2.29 16 32 H 0.11 1.62 8.06 -52.48 -0.42 1.20 16 33 H 0.11 1.43 8.06 -52.49 -0.42 1.01 16 34 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 35 H 0.12 2.37 8.06 -52.49 -0.42 1.95 16 36 H 0.14 2.49 7.65 -52.49 -0.40 2.09 16 37 H 0.13 1.52 8.06 -52.49 -0.42 1.10 16 38 H 0.11 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.10 1.08 6.19 -51.93 -0.32 0.76 16 40 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 42 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 43 H 0.15 2.26 6.03 -52.49 -0.32 1.94 16 LS Contribution 361.29 15.07 5.44 5.44 Total: -1.00 -29.27 361.29 -10.59 -39.86 By element: Atomic # 1 Polarization: 17.13 SS G_CDS: -5.33 Total: 11.79 kcal Atomic # 6 Polarization: -8.84 SS G_CDS: -6.03 Total: -14.87 kcal Atomic # 7 Polarization: -41.90 SS G_CDS: 0.27 Total: -41.63 kcal Atomic # 8 Polarization: -15.54 SS G_CDS: 0.08 Total: -15.46 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -5.02 Total: 14.86 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -29.27 -10.59 -39.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195616785.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.510 kcal (2) G-P(sol) polarization free energy of solvation -29.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.861 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds