Wall clock time and date at job start Tue Mar 31 2020 13:58:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31316 * 1 3 3 Si 1.86802 * 119.99818 * 2 1 4 4 H 1.48498 * 109.47216 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.47074 * 299.99838 * 3 2 1 6 6 H 1.48500 * 109.47456 * 59.99814 * 3 2 1 7 7 C 1.39104 * 120.00434 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00581 * 185.73282 * 7 2 1 9 9 N 1.36783 * 119.99842 * 5.73696 * 7 2 1 10 10 C 1.46499 * 120.00125 * 46.03283 * 9 7 2 11 11 C 1.50700 * 109.47513 * 94.00339 * 10 9 7 12 12 C 1.38232 * 119.99905 * 85.76409 * 11 10 9 13 13 C 1.38241 * 119.99916 * 179.97438 * 12 11 10 14 14 C 1.38231 * 120.00153 * 0.06838 * 13 12 11 15 15 C 1.38242 * 120.00017 * 359.91189 * 14 13 12 16 16 C 1.38234 * 119.99751 * 265.74732 * 11 10 9 17 17 C 1.34778 * 120.00061 * 226.03270 * 9 7 2 18 18 O 1.21569 * 120.00116 * 175.60726 * 17 9 7 19 19 C 1.48002 * 119.99974 * 355.60575 * 17 9 7 20 20 C 1.39410 * 119.73107 * 185.86682 * 19 17 9 21 21 C 1.38542 * 119.05253 * 179.79919 * 20 19 17 22 22 C 1.38666 * 118.49591 * 0.46727 * 21 20 19 23 23 C 1.50705 * 120.31056 * 179.72936 * 22 21 20 24 24 C 1.53005 * 117.49458 * 188.64179 * 23 22 21 25 25 C 1.52999 * 60.00110 * 252.51383 * 24 23 22 26 26 C 1.38547 * 119.37345 * 359.75273 * 22 21 20 27 27 N 1.31533 * 120.90815 * 0.02562 * 26 22 21 28 28 H 0.97003 * 120.00265 * 359.97438 * 1 2 3 29 29 H 1.09009 * 109.47054 * 334.00264 * 10 9 7 30 30 H 1.09002 * 109.47291 * 214.00914 * 10 9 7 31 31 H 1.07996 * 119.99837 * 359.70322 * 12 11 10 32 32 H 1.08003 * 119.99593 * 179.97438 * 13 12 11 33 33 H 1.07995 * 120.00043 * 179.97438 * 14 13 12 34 34 H 1.07992 * 120.00082 * 180.02562 * 15 14 13 35 35 H 1.07993 * 120.00759 * 359.97438 * 16 11 10 36 36 H 1.08002 * 120.47664 * 359.97438 * 20 19 17 37 37 H 1.08001 * 120.75391 * 180.19927 * 21 20 19 38 38 H 1.08990 * 115.55403 * 334.35468 * 23 22 21 39 39 H 1.08997 * 117.50184 * 0.02562 * 24 23 22 40 40 H 1.08998 * 117.49414 * 145.02272 * 24 23 22 41 41 H 1.09004 * 117.49952 * 252.51193 * 25 24 23 42 42 H 1.08998 * 117.49626 * 107.49187 * 25 24 23 43 43 H 1.07998 * 119.54823 * 179.97438 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3132 0.0000 0.0000 3 14 2.2471 1.6178 0.0000 4 1 3.7071 1.3465 -0.0006 5 1 1.8883 2.3965 -1.2126 6 1 1.8884 2.3966 1.2124 7 6 2.0088 -1.2046 0.0005 8 1 3.0847 -1.2069 0.0940 9 7 1.3300 -2.3863 -0.1173 10 6 0.2847 -2.5325 -1.1333 11 6 0.8767 -3.1383 -2.3797 12 6 0.9788 -4.5117 -2.4993 13 6 1.5213 -5.0675 -3.6428 14 6 1.9630 -4.2499 -4.6662 15 6 1.8605 -2.8765 -4.5468 16 6 1.3172 -2.3207 -3.4035 17 6 1.6230 -3.4163 0.7011 18 8 0.9669 -4.4385 0.6506 19 6 2.7433 -3.3028 1.6615 20 6 3.1201 -4.4112 2.4184 21 6 4.1735 -4.2904 3.3101 22 6 4.8082 -3.0626 3.4219 23 6 5.9547 -2.8838 4.3836 24 6 6.4755 -1.4623 4.6054 25 6 7.3061 -2.4646 3.8014 26 6 4.3779 -2.0017 2.6416 27 7 3.3779 -2.1445 1.7992 28 1 -0.4851 0.8400 0.0004 29 1 -0.1330 -1.5534 -1.3683 30 1 -0.5036 -3.1819 -0.7527 31 1 0.6388 -5.1503 -1.6974 32 1 1.6014 -6.1405 -3.7360 33 1 2.3871 -4.6841 -5.5594 34 1 2.2051 -2.2378 -5.3465 35 1 1.2368 -1.2478 -3.3105 36 1 2.6001 -5.3515 2.3092 37 1 4.4904 -5.1323 3.9078 38 1 5.9629 -3.5620 5.2367 39 1 5.9886 -0.6565 4.0561 40 1 6.8262 -1.2051 5.6048 41 1 8.2034 -2.8667 4.2719 42 1 7.3659 -2.3181 2.7229 43 1 4.8699 -1.0441 2.7267 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001195616785.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:58:16 Heat of formation + Delta-G solvation = 58.207158 kcal Electronic energy + Delta-G solvation = -26643.336674 eV Core-core repulsion = 23040.367962 eV Total energy + Delta-G solvation = -3602.968711 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.58756 -40.46039 -39.41784 -37.80783 -36.79897 -33.68342 -33.46184 -32.47069 -31.71181 -31.51302 -27.71419 -26.86872 -25.20096 -24.68871 -23.34979 -23.09831 -22.48461 -21.62749 -21.13418 -19.67297 -18.17923 -17.69079 -17.24493 -16.86664 -16.45638 -16.23851 -16.01489 -15.85439 -15.62580 -15.56097 -15.52037 -14.78592 -14.50326 -14.22289 -14.02963 -13.69919 -13.68191 -13.49311 -13.13077 -12.97492 -12.79477 -12.62982 -12.48817 -12.27651 -12.03737 -11.97082 -11.80834 -11.74653 -11.25115 -11.04787 -10.80279 -10.62545 -10.02308 -9.75904 -9.67218 -9.56864 -9.23043 -8.19725 -5.97306 -0.18921 0.42993 0.49195 0.56252 1.42241 1.45245 1.59019 1.99372 2.34726 2.74875 2.87953 3.04667 3.18123 3.27309 3.49553 3.73275 3.92028 4.01862 4.03037 4.11777 4.12153 4.18624 4.23045 4.25209 4.36732 4.41457 4.49731 4.59747 4.73160 4.79765 4.85203 4.91593 5.06924 5.11293 5.15217 5.21091 5.22615 5.30535 5.30771 5.37324 5.63263 5.64305 5.65095 5.80751 5.91085 6.07130 6.20281 6.59532 7.02775 7.23921 7.54720 7.96886 8.83548 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.010968 B = 0.004739 C = 0.003904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2552.297205 B = 5906.475099 C = 7169.527489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C -0.005 4.005 3 Si 0.980 3.020 4 H -0.256 1.256 5 H -0.278 1.278 6 H -0.284 1.284 7 C -0.296 4.296 8 H 0.112 0.888 9 N -0.416 5.416 10 C 0.150 3.850 11 C -0.103 4.103 12 C -0.125 4.125 13 C -0.128 4.128 14 C -0.122 4.122 15 C -0.124 4.124 16 C -0.114 4.114 17 C 0.496 3.504 18 O -0.624 6.624 19 C 0.067 3.933 20 C -0.129 4.129 21 C -0.077 4.077 22 C -0.087 4.087 23 C -0.122 4.122 24 C -0.174 4.174 25 C -0.160 4.160 26 C 0.066 3.934 27 N -0.437 5.437 28 H 0.268 0.732 29 H 0.102 0.898 30 H 0.038 0.962 31 H 0.104 0.896 32 H 0.142 0.858 33 H 0.156 0.844 34 H 0.148 0.852 35 H 0.111 0.889 36 H 0.139 0.861 37 H 0.174 0.826 38 H 0.137 0.863 39 H 0.091 0.909 40 H 0.119 0.881 41 H 0.121 0.879 42 H 0.085 0.915 43 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.231 -4.142 2.021 14.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.205 4.205 3 Si 0.804 3.196 4 H -0.179 1.179 5 H -0.203 1.203 6 H -0.210 1.210 7 C -0.426 4.426 8 H 0.129 0.871 9 N -0.131 5.131 10 C 0.027 3.973 11 C -0.104 4.104 12 C -0.143 4.143 13 C -0.146 4.146 14 C -0.140 4.140 15 C -0.142 4.142 16 C -0.133 4.133 17 C 0.286 3.714 18 O -0.513 6.513 19 C -0.070 4.070 20 C -0.150 4.150 21 C -0.102 4.102 22 C -0.090 4.090 23 C -0.141 4.141 24 C -0.211 4.211 25 C -0.197 4.197 26 C -0.094 4.094 27 N -0.147 5.147 28 H 0.077 0.923 29 H 0.120 0.880 30 H 0.056 0.944 31 H 0.123 0.877 32 H 0.160 0.840 33 H 0.174 0.826 34 H 0.166 0.834 35 H 0.129 0.871 36 H 0.156 0.844 37 H 0.191 0.809 38 H 0.154 0.846 39 H 0.109 0.891 40 H 0.138 0.862 41 H 0.139 0.861 42 H 0.103 0.897 43 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 12.426 -3.761 1.432 13.061 hybrid contribution -0.314 0.273 0.678 0.796 sum 12.112 -3.487 2.111 12.779 Atomic orbital electron populations 1.69879 1.07564 1.28078 1.49548 1.26270 0.95858 1.02615 0.95724 0.85055 0.79383 0.77675 0.77468 1.17941 1.20334 1.21020 1.20198 0.92968 0.81867 1.47522 0.87073 1.43526 1.32096 1.11522 1.25930 1.20343 0.89787 1.01442 0.85705 1.20435 0.99861 0.94250 0.95869 1.21257 1.00241 0.94474 0.98368 1.21394 0.98932 1.00942 0.93350 1.21464 0.99710 0.93305 0.99491 1.21429 0.99287 0.96066 0.97435 1.21157 0.98754 0.99447 0.93948 1.18724 0.85688 0.84971 0.82049 1.90534 1.54750 1.32507 1.73468 1.21152 0.96726 0.90980 0.98097 1.22158 0.97806 0.99082 0.95945 1.21628 0.93447 0.98273 0.96852 1.20627 0.97290 0.93951 0.97092 1.21028 0.92226 1.00882 0.99949 1.23178 1.03249 0.91744 1.02930 1.23103 0.93774 1.02747 1.00040 1.23332 0.93741 0.99898 0.92412 1.68581 1.05969 1.23523 1.16614 0.92252 0.88030 0.94366 0.87749 0.84005 0.82635 0.83408 0.87071 0.84361 0.80871 0.84550 0.89054 0.86237 0.86076 0.89655 0.81704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.83 11.23 21.69 0.24 -50.58 16 2 C 0.00 -0.24 5.21 84.98 0.44 0.20 16 3 Si 0.98 41.95 29.56 68.60 2.03 43.97 16 4 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 5 H -0.28 -11.52 7.11 99.48 0.71 -10.81 16 6 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 7 C -0.30 -15.95 7.55 84.13 0.63 -15.31 16 8 H 0.11 5.97 5.88 -2.91 -0.02 5.95 16 9 N -0.42 -22.73 2.47 -642.72 -1.59 -24.32 16 10 C 0.15 7.87 5.04 85.63 0.43 8.30 16 11 C -0.10 -4.68 5.43 -19.87 -0.11 -4.79 16 12 C -0.12 -5.23 9.57 22.27 0.21 -5.02 16 13 C -0.13 -4.23 10.05 22.27 0.22 -4.00 16 14 C -0.12 -3.50 10.05 22.27 0.22 -3.27 16 15 C -0.12 -3.93 10.05 22.27 0.22 -3.71 16 16 C -0.11 -4.59 9.68 22.27 0.22 -4.38 16 17 C 0.50 26.78 7.58 86.83 0.66 27.44 16 18 O -0.62 -34.99 14.82 -3.93 -0.06 -35.05 16 19 C 0.07 3.15 6.66 41.87 0.28 3.43 16 20 C -0.13 -4.84 9.63 22.62 0.22 -4.62 16 21 C -0.08 -2.16 9.88 22.44 0.22 -1.93 16 22 C -0.09 -2.40 5.63 -19.69 -0.11 -2.51 16 23 C -0.12 -2.28 6.06 -11.53 -0.07 -2.35 16 24 C -0.17 -2.87 9.87 30.60 0.30 -2.56 16 25 C -0.16 -2.55 10.17 30.60 0.31 -2.24 16 26 C 0.07 2.26 10.47 84.81 0.89 3.15 16 27 N -0.44 -19.43 6.34 -184.95 -1.17 -20.60 16 28 H 0.27 14.11 8.31 -92.71 -0.77 13.34 16 29 H 0.10 5.61 5.56 -2.38 -0.01 5.59 16 30 H 0.04 2.11 7.46 -2.39 -0.02 2.09 16 31 H 0.10 4.76 7.06 -2.91 -0.02 4.74 16 32 H 0.14 3.76 8.06 -2.91 -0.02 3.74 16 33 H 0.16 3.15 8.06 -2.91 -0.02 3.12 16 34 H 0.15 3.62 8.06 -2.91 -0.02 3.59 16 35 H 0.11 4.58 8.06 -2.91 -0.02 4.56 16 36 H 0.14 5.10 7.65 -2.91 -0.02 5.08 16 37 H 0.17 3.32 8.06 -2.91 -0.02 3.29 16 38 H 0.14 1.94 8.14 -2.39 -0.02 1.92 16 39 H 0.09 1.70 6.19 -2.39 -0.01 1.69 16 40 H 0.12 1.46 8.14 -2.39 -0.02 1.45 16 41 H 0.12 1.37 8.14 -2.38 -0.02 1.35 16 42 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 43 H 0.17 4.89 6.03 -2.91 -0.02 4.87 16 Total: -1.00 -70.45 361.29 5.69 -64.76 By element: Atomic # 1 Polarization: 34.97 SS G_CDS: 1.03 Total: 36.01 kcal Atomic # 6 Polarization: -19.39 SS G_CDS: 5.20 Total: -14.19 kcal Atomic # 7 Polarization: -92.99 SS G_CDS: -2.51 Total: -95.51 kcal Atomic # 8 Polarization: -34.99 SS G_CDS: -0.06 Total: -35.05 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 2.03 Total: 43.97 kcal Total: -70.45 5.69 -64.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195616785.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.967 kcal (2) G-P(sol) polarization free energy of solvation -70.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.760 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds