Wall clock time and date at job start Tue Mar 31 2020 13:58:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31363 * 1 3 3 Si 1.86804 * 119.99780 * 2 1 4 4 H 1.48497 * 109.47222 * 240.00391 * 3 2 1 5 5 H 1.48500 * 109.46898 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47069 * 119.99961 * 3 2 1 7 7 C 1.39039 * 120.00276 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99821 * 286.99610 * 7 2 1 9 9 N 1.36874 * 120.00344 * 106.99965 * 7 2 1 10 10 C 1.46508 * 120.00097 * 149.31232 * 9 7 2 11 11 C 1.50700 * 109.46758 * 90.00191 * 10 9 7 12 12 C 1.38229 * 120.00326 * 90.00239 * 11 10 9 13 13 C 1.38231 * 120.00382 * 179.97438 * 12 11 10 14 14 C 1.38240 * 119.99786 * 0.06880 * 13 12 11 15 15 C 1.38230 * 119.99929 * 359.91039 * 14 13 12 16 16 C 1.38234 * 120.00142 * 0.04326 * 15 14 13 17 17 C 1.34769 * 120.00110 * 329.31216 * 9 7 2 18 18 O 1.21594 * 119.99798 * 357.09732 * 17 9 7 19 19 C 1.47727 * 120.00471 * 177.09422 * 17 9 7 20 20 C 1.39631 * 120.56193 * 310.02680 * 19 17 9 21 21 N 1.31652 * 120.55258 * 179.72293 * 20 19 17 22 22 C 1.31959 * 121.88742 * 0.54429 * 21 20 19 23 23 C 1.38330 * 121.09460 * 359.74241 * 22 21 20 24 24 C 1.38376 * 119.31137 * 359.97438 * 23 22 21 25 25 C 1.50696 * 120.86039 * 180.02562 * 24 23 22 26 26 C 1.53010 * 117.49516 * 16.80633 * 25 24 23 27 27 C 1.53005 * 117.49750 * 308.15102 * 25 24 23 28 28 H 0.96998 * 120.00274 * 354.50683 * 1 2 3 29 29 H 1.09000 * 109.46952 * 330.00101 * 10 9 7 30 30 H 1.08995 * 109.46971 * 210.00298 * 10 9 7 31 31 H 1.08006 * 119.99981 * 359.69508 * 12 11 10 32 32 H 1.08006 * 120.00017 * 179.97438 * 13 12 11 33 33 H 1.08004 * 119.99682 * 179.97438 * 14 13 12 34 34 H 1.08003 * 119.99652 * 180.02562 * 15 14 13 35 35 H 1.07999 * 119.99876 * 180.02562 * 16 15 14 36 36 H 1.08006 * 119.72463 * 359.97109 * 20 19 17 37 37 H 1.08007 * 119.45518 * 179.72358 * 22 21 20 38 38 H 1.08003 * 120.34279 * 180.02562 * 23 22 21 39 39 H 1.09000 * 115.55426 * 162.47622 * 25 24 23 40 40 H 1.08997 * 117.49718 * 0.02562 * 26 25 24 41 41 H 1.09003 * 117.49542 * 145.02567 * 26 25 24 42 42 H 1.08996 * 117.49636 * 214.98183 * 27 25 24 43 43 H 1.09001 * 117.49453 * 359.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3136 0.0000 0.0000 3 14 2.2476 1.6178 0.0000 4 1 3.1012 1.6966 -1.2125 5 1 1.2825 2.7464 0.0006 6 1 3.1013 1.6965 1.2125 7 6 2.0089 -1.2041 -0.0005 8 1 2.0421 -1.8089 0.8937 9 7 2.6512 -1.6230 -1.1343 10 6 3.8656 -2.4359 -1.0302 11 6 3.4922 -3.8957 -1.0056 12 6 3.3969 -4.6049 -2.1883 13 6 3.0549 -5.9440 -2.1657 14 6 2.8069 -6.5737 -0.9603 15 6 2.9027 -5.8648 0.2225 16 6 3.2456 -4.5258 0.1999 17 6 2.1666 -1.2877 -2.3463 18 8 1.1301 -0.6580 -2.4336 19 6 2.8947 -1.6851 -3.5687 20 6 4.2618 -1.4308 -3.6952 21 7 4.9116 -1.7899 -4.7824 22 6 4.3060 -2.3879 -5.7909 23 6 2.9525 -2.6699 -5.7457 24 6 2.2243 -2.3182 -4.6228 25 6 0.7483 -2.6093 -4.5362 26 6 0.1707 -3.6299 -5.5191 27 6 -0.1334 -2.1400 -5.6953 28 1 -0.4850 0.8361 0.0804 29 1 4.3960 -2.1810 -0.1127 30 1 4.5087 -2.2398 -1.8881 31 1 3.5851 -4.1115 -3.1304 32 1 2.9800 -6.4979 -3.0899 33 1 2.5393 -7.6200 -0.9427 34 1 2.7093 -6.3569 1.1642 35 1 3.3208 -3.9720 1.1240 36 1 4.7915 -0.9390 -2.8926 37 1 4.8765 -2.6615 -6.6662 38 1 2.4693 -3.1602 -6.5779 39 1 0.3209 -2.5780 -3.5340 40 1 0.8584 -4.0910 -6.2279 41 1 -0.6370 -4.2697 -5.1635 42 1 -1.1410 -1.8003 -5.4556 43 1 0.3541 -1.6204 -6.5202 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001197851776.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:58:29 Heat of formation + Delta-G solvation = 88.136644 kcal Electronic energy + Delta-G solvation = -27846.805147 eV Core-core repulsion = 24245.134276 eV Total energy + Delta-G solvation = -3601.670871 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.40064 -38.88860 -37.72439 -36.93936 -34.42211 -32.91543 -31.49512 -30.94015 -30.63126 -30.43911 -26.10673 -25.13340 -24.25038 -23.06049 -22.17243 -22.11766 -21.04869 -20.54827 -19.49025 -17.39256 -16.85973 -16.48923 -15.95760 -15.74470 -15.01868 -14.99928 -14.60503 -14.50241 -14.15124 -13.90655 -13.60873 -13.51715 -13.29993 -12.95773 -12.74711 -12.47723 -12.28917 -12.09767 -11.67943 -11.41572 -11.38105 -11.15456 -11.03308 -10.85622 -10.81361 -10.59515 -10.53747 -10.17856 -10.09132 -9.37708 -8.88380 -8.85155 -8.55955 -8.49952 -8.32750 -8.03277 -7.57702 -6.93689 -3.56967 1.28196 1.50700 1.74148 1.80738 3.25257 3.39508 3.45046 3.78155 4.05011 4.09965 4.36695 4.39214 4.52001 4.70534 4.74208 4.98133 5.00470 5.19105 5.22529 5.26769 5.31045 5.35420 5.43217 5.51055 5.55097 5.58016 5.73313 5.78529 5.89839 5.92845 5.99955 6.03816 6.06176 6.25649 6.28734 6.29008 6.40343 6.44901 6.50885 6.82462 6.84740 6.85602 6.96289 7.09115 7.35028 7.39890 8.01997 8.23532 8.72972 9.13015 9.40444 10.10889 10.19616 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.008837 B = 0.007288 C = 0.005394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3167.694313 B = 3840.825084 C = 5189.443512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.690 5.690 2 C 0.193 3.807 3 Si 0.791 3.209 4 H -0.267 1.267 5 H -0.287 1.287 6 H -0.271 1.271 7 C -0.462 4.462 8 H 0.096 0.904 9 N -0.406 5.406 10 C 0.119 3.881 11 C -0.081 4.081 12 C -0.106 4.106 13 C -0.125 4.125 14 C -0.129 4.129 15 C -0.126 4.126 16 C -0.095 4.095 17 C 0.460 3.540 18 O -0.546 6.546 19 C -0.126 4.126 20 C 0.102 3.898 21 N -0.488 5.488 22 C 0.085 3.915 23 C -0.179 4.179 24 C 0.021 3.979 25 C -0.106 4.106 26 C -0.180 4.180 27 C -0.160 4.160 28 H 0.275 0.725 29 H 0.085 0.915 30 H 0.077 0.923 31 H 0.112 0.888 32 H 0.114 0.886 33 H 0.114 0.886 34 H 0.116 0.884 35 H 0.122 0.878 36 H 0.158 0.842 37 H 0.150 0.850 38 H 0.131 0.869 39 H 0.129 0.871 40 H 0.093 0.907 41 H 0.096 0.904 42 H 0.098 0.902 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.754 -9.509 -6.808 12.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.309 5.309 2 C -0.037 4.037 3 Si 0.610 3.390 4 H -0.191 1.191 5 H -0.213 1.213 6 H -0.196 1.196 7 C -0.578 4.578 8 H 0.114 0.886 9 N -0.123 5.123 10 C -0.005 4.005 11 C -0.082 4.082 12 C -0.125 4.125 13 C -0.143 4.143 14 C -0.147 4.147 15 C -0.144 4.144 16 C -0.114 4.114 17 C 0.251 3.749 18 O -0.430 6.430 19 C -0.132 4.132 20 C -0.056 4.056 21 N -0.197 5.197 22 C -0.071 4.071 23 C -0.199 4.199 24 C 0.013 3.987 25 C -0.124 4.124 26 C -0.217 4.217 27 C -0.197 4.197 28 H 0.087 0.913 29 H 0.103 0.897 30 H 0.095 0.905 31 H 0.130 0.870 32 H 0.132 0.868 33 H 0.132 0.868 34 H 0.134 0.866 35 H 0.140 0.860 36 H 0.175 0.825 37 H 0.167 0.833 38 H 0.148 0.852 39 H 0.147 0.853 40 H 0.112 0.888 41 H 0.114 0.886 42 H 0.116 0.884 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 4.857 -9.006 -6.934 12.361 hybrid contribution -0.426 0.783 0.083 0.895 sum 4.431 -8.224 -6.851 11.584 Atomic orbital electron populations 1.70746 1.09621 1.30480 1.20028 1.24950 0.92447 0.98688 0.87630 0.88091 0.84371 0.86922 0.79610 1.19122 1.21276 1.19620 1.18135 1.40277 1.07384 0.92005 0.88606 1.43281 1.20385 1.43849 1.04828 1.20925 0.89427 0.87148 1.02965 1.20368 0.98455 0.96302 0.93088 1.21038 0.99598 0.94171 0.97661 1.21001 1.00769 0.94939 0.97562 1.21011 1.01413 0.99443 0.92817 1.21071 1.00779 0.94699 0.97824 1.21077 0.98167 0.94223 0.97901 1.17623 0.86614 0.88537 0.82150 1.90708 1.23813 1.43925 1.84560 1.21334 0.94955 0.99488 0.97396 1.22961 0.90763 0.96648 0.95195 1.67573 1.39923 1.11393 1.00844 1.22604 0.91973 0.95734 0.96798 1.21861 0.95671 1.03532 0.98863 1.19463 0.94108 0.93124 0.92040 1.21070 0.90210 1.03411 0.97749 1.23064 1.03501 0.92323 1.02773 1.22916 1.00799 0.96465 0.99556 0.91332 0.89680 0.90506 0.86978 0.86838 0.86833 0.86606 0.85953 0.82507 0.83261 0.85160 0.85288 0.88843 0.88569 0.88397 0.89041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.69 -18.98 13.42 55.50 0.74 -18.23 16 2 C 0.19 5.18 3.15 -17.46 -0.05 5.13 16 3 Si 0.79 19.53 29.45 -169.99 -5.01 14.53 16 4 H -0.27 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.27 -6.44 7.11 56.52 0.40 -6.03 16 7 C -0.46 -12.08 9.24 -15.00 -0.14 -12.22 16 8 H 0.10 2.53 8.06 -52.48 -0.42 2.11 16 9 N -0.41 -9.57 2.57 -117.21 -0.30 -9.87 16 10 C 0.12 2.28 5.25 -5.19 -0.03 2.25 16 11 C -0.08 -1.47 5.46 -104.62 -0.57 -2.04 16 12 C -0.11 -1.82 9.43 -39.59 -0.37 -2.19 16 13 C -0.12 -1.88 10.05 -39.58 -0.40 -2.28 16 14 C -0.13 -1.83 10.05 -39.58 -0.40 -2.23 16 15 C -0.13 -1.88 10.05 -39.59 -0.40 -2.28 16 16 C -0.10 -1.62 9.70 -39.58 -0.38 -2.00 16 17 C 0.46 11.20 6.19 -12.39 -0.08 11.13 16 18 O -0.55 -15.36 13.36 5.28 0.07 -15.29 16 19 C -0.13 -2.55 3.70 -104.82 -0.39 -2.94 16 20 C 0.10 1.88 8.59 -17.11 -0.15 1.73 16 21 N -0.49 -8.20 10.34 -12.89 -0.13 -8.34 16 22 C 0.09 1.22 11.17 -17.46 -0.20 1.03 16 23 C -0.18 -2.61 9.22 -39.50 -0.36 -2.98 16 24 C 0.02 0.38 5.15 -103.90 -0.53 -0.15 16 25 C -0.11 -1.90 5.29 -91.77 -0.49 -2.39 16 26 C -0.18 -2.43 9.86 -26.69 -0.26 -2.70 16 27 C -0.16 -2.40 10.08 -26.69 -0.27 -2.66 16 28 H 0.28 7.03 8.32 -40.82 -0.34 6.69 16 29 H 0.08 1.52 7.98 -51.93 -0.41 1.10 16 30 H 0.08 1.36 3.78 -51.93 -0.20 1.16 16 31 H 0.11 1.95 6.06 -52.48 -0.32 1.63 16 32 H 0.11 1.45 8.06 -52.48 -0.42 1.03 16 33 H 0.11 1.30 8.06 -52.48 -0.42 0.88 16 34 H 0.12 1.45 8.06 -52.48 -0.42 1.02 16 35 H 0.12 2.01 8.06 -52.49 -0.42 1.58 16 36 H 0.16 2.78 6.86 -52.48 -0.36 2.42 16 37 H 0.15 1.61 8.06 -52.48 -0.42 1.19 16 38 H 0.13 1.52 6.42 -52.48 -0.34 1.18 16 39 H 0.13 2.84 6.68 -51.93 -0.35 2.49 16 40 H 0.09 1.08 6.51 -51.93 -0.34 0.74 16 41 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 42 H 0.10 1.44 8.14 -51.93 -0.42 1.02 16 43 H 0.09 1.27 8.14 -51.93 -0.42 0.84 16 LS Contribution 357.43 15.07 5.39 5.39 Total: -1.00 -30.93 357.43 -9.95 -40.88 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: -5.25 Total: 8.75 kcal Atomic # 6 Polarization: -12.34 SS G_CDS: -5.47 Total: -17.81 kcal Atomic # 7 Polarization: -36.75 SS G_CDS: 0.31 Total: -36.44 kcal Atomic # 8 Polarization: -15.36 SS G_CDS: 0.07 Total: -15.29 kcal Atomic # 14 Polarization: 19.53 SS G_CDS: -5.01 Total: 14.53 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -30.93 -9.95 -40.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001197851776.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.018 kcal (2) G-P(sol) polarization free energy of solvation -30.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.881 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds