Wall clock time and date at job start Tue Mar 31 2020 14:02:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86800 * 119.99691 * 2 1 4 4 H 1.48503 * 109.46888 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47142 * 300.00487 * 3 2 1 6 6 H 1.48503 * 109.47017 * 60.00627 * 3 2 1 7 7 C 1.38805 * 119.99949 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99872 * 179.97438 * 7 2 1 9 9 N 1.36942 * 120.00438 * 359.97438 * 7 2 1 10 10 C 1.46504 * 120.00054 * 180.02562 * 9 7 2 11 11 C 1.52994 * 109.46836 * 180.02562 * 10 9 7 12 12 H 1.09006 * 109.47018 * 60.00152 * 11 10 9 13 13 C 1.54806 * 109.47189 * 179.97438 * 11 10 9 14 14 N 1.45120 * 109.53668 * 187.88959 * 13 11 10 15 15 C 1.34773 * 118.75965 * 90.68258 * 14 13 11 16 16 O 1.21570 * 120.00207 * 354.20290 * 15 14 13 17 17 C 1.47723 * 120.00050 * 174.21043 * 15 14 13 18 18 C 1.39658 * 120.11505 * 321.54321 * 17 15 14 19 19 C 1.37842 * 119.87846 * 179.69951 * 18 17 15 20 20 C 1.38658 * 120.11304 * 0.59806 * 19 18 17 21 21 F 1.35101 * 119.87542 * 179.69977 * 20 19 18 22 22 C 1.38655 * 120.24332 * 359.67584 * 20 19 18 23 23 C 1.37833 * 120.11715 * 0.02562 * 22 20 19 24 24 C 1.47528 * 122.47120 * 270.68844 * 14 13 11 25 25 C 1.53576 * 111.02027 * 41.65141 * 24 14 13 26 26 C 1.51539 * 109.58069 * 39.96747 * 25 24 14 27 27 O 1.38019 * 109.47017 * 300.00461 * 11 10 9 28 28 H 0.96996 * 120.00078 * 359.97438 * 1 2 3 29 29 H 0.96998 * 119.99804 * 0.02562 * 9 7 2 30 30 H 1.08993 * 109.47192 * 60.00029 * 10 9 7 31 31 H 1.09001 * 109.46902 * 299.99428 * 10 9 7 32 32 H 1.09003 * 109.45798 * 307.90615 * 13 11 10 33 33 H 1.09007 * 109.45656 * 67.86953 * 13 11 10 34 34 H 1.08000 * 120.06199 * 359.96900 * 18 17 15 35 35 H 1.07992 * 119.94290 * 180.29138 * 19 18 17 36 36 H 1.08000 * 119.94176 * 180.02562 * 22 20 19 37 37 H 1.08001 * 120.05654 * 180.02562 * 23 22 20 38 38 H 1.09001 * 109.18060 * 281.25300 * 24 14 13 39 39 H 1.08995 * 109.15816 * 162.03986 * 24 14 13 40 40 H 1.09001 * 109.45411 * 279.93605 * 25 24 14 41 41 H 1.08994 * 109.45220 * 159.99895 * 25 24 14 42 42 H 1.08996 * 109.59305 * 148.81351 * 26 25 24 43 43 H 1.08998 * 109.71345 * 28.44605 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8913 2.3965 -1.2124 6 1 1.8915 2.3964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0582 -3.6568 -0.0005 11 6 1.0640 -4.8197 -0.0012 12 1 0.4377 -4.7618 -0.8915 13 6 1.8381 -6.1604 -0.0018 14 7 0.9075 -7.2579 -0.1902 15 6 0.6429 -7.6758 -1.4439 16 8 1.0963 -7.0696 -2.3951 17 6 -0.1984 -8.8703 -1.6621 18 6 -0.0811 -9.9743 -0.8148 19 6 -0.8729 -11.0839 -1.0193 20 6 -1.7757 -11.1101 -2.0713 21 9 -2.5450 -12.2026 -2.2709 22 6 -1.8921 -10.0190 -2.9190 23 6 -1.1095 -8.9020 -2.7199 24 6 0.2403 -7.9332 0.9391 25 6 -0.2238 -6.9166 1.9925 26 6 -0.7805 -5.6880 1.3019 27 8 0.2700 -4.7468 1.1254 28 1 -0.4850 0.8400 0.0004 29 1 0.3556 -2.3881 -0.0005 30 1 2.6848 -3.7145 0.8894 31 1 2.6848 -3.7145 -0.8906 32 1 2.5665 -6.1587 -0.8127 33 1 2.3549 -6.2817 0.9502 34 1 0.6256 -9.9569 0.0017 35 1 -0.7864 -11.9363 -0.3618 36 1 -2.5971 -10.0445 -3.7367 37 1 -1.2013 -8.0525 -3.3805 38 1 0.9371 -8.6333 1.4000 39 1 -0.6242 -8.4829 0.5669 40 1 0.6218 -6.6298 2.6175 41 1 -0.9983 -7.3659 2.6140 42 1 -1.5659 -5.2477 1.9162 43 1 -1.1891 -5.9657 0.3303 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001199698745.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:02:32 Heat of formation + Delta-G solvation = -67.565536 kcal Electronic energy + Delta-G solvation = -27339.686293 eV Core-core repulsion = 23300.494444 eV Total energy + Delta-G solvation = -4039.191849 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.37134 -41.02858 -39.20803 -38.04409 -35.78914 -34.59003 -32.89881 -31.74139 -31.35332 -30.87450 -28.70029 -26.74794 -25.45624 -23.82077 -23.46392 -22.43276 -21.65757 -20.93183 -19.81263 -18.04691 -17.90789 -17.13638 -16.95966 -16.43825 -16.31181 -16.01989 -15.77057 -15.47313 -14.75351 -14.70644 -14.30420 -14.21864 -13.91364 -13.77157 -13.51408 -13.29009 -13.11652 -12.88888 -12.71482 -12.55913 -12.26582 -11.99313 -11.68295 -11.48681 -11.38667 -10.98094 -10.79647 -10.77122 -10.27802 -10.08431 -9.91405 -9.65897 -9.60950 -9.41330 -9.14796 -8.81197 -8.61664 -6.81966 -5.67202 -2.95261 0.33912 0.73167 2.41337 2.71188 3.22832 3.49103 3.54114 3.56756 3.72044 3.95622 4.08582 4.22632 4.36234 4.53895 4.62271 4.68718 4.75233 4.82743 4.92147 5.18910 5.20657 5.32412 5.36864 5.41046 5.43585 5.47269 5.57138 5.59275 5.65798 5.67558 5.80717 5.83938 5.95860 5.98577 6.10103 6.30058 6.35835 6.44524 6.67842 6.80315 7.08964 7.77196 7.94103 8.01748 8.51194 9.62754 10.21353 10.57411 11.55818 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.025115 B = 0.002648 C = 0.002578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.611908 B =10569.506485 C =10860.100182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.016 4.016 3 Si 0.907 3.093 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.236 4.236 8 H 0.071 0.929 9 N -0.725 5.725 10 C 0.166 3.834 11 C 0.089 3.911 12 H 0.053 0.947 13 C 0.082 3.918 14 N -0.603 5.603 15 C 0.551 3.449 16 O -0.521 6.521 17 C -0.139 4.139 18 C -0.062 4.062 19 C -0.161 4.161 20 C 0.119 3.881 21 F -0.136 7.136 22 C -0.158 4.158 23 C -0.035 4.035 24 C 0.099 3.901 25 C -0.167 4.167 26 C 0.073 3.927 27 O -0.367 6.367 28 H 0.253 0.747 29 H 0.387 0.613 30 H 0.026 0.974 31 H 0.035 0.965 32 H 0.094 0.906 33 H 0.086 0.914 34 H 0.143 0.857 35 H 0.142 0.858 36 H 0.143 0.857 37 H 0.144 0.856 38 H 0.069 0.931 39 H 0.088 0.912 40 H 0.083 0.917 41 H 0.085 0.915 42 H 0.090 0.910 43 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.707 -26.844 1.026 27.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.211 4.211 3 Si 0.738 3.262 4 H -0.206 1.206 5 H -0.220 1.220 6 H -0.219 1.219 7 C -0.367 4.367 8 H 0.089 0.911 9 N -0.370 5.370 10 C 0.038 3.962 11 C 0.029 3.971 12 H 0.071 0.929 13 C -0.042 4.042 14 N -0.335 5.335 15 C 0.339 3.661 16 O -0.397 6.397 17 C -0.142 4.142 18 C -0.080 4.080 19 C -0.180 4.180 20 C 0.099 3.901 21 F -0.114 7.114 22 C -0.177 4.177 23 C -0.054 4.054 24 C -0.024 4.024 25 C -0.205 4.205 26 C -0.004 4.004 27 O -0.284 6.284 28 H 0.063 0.937 29 H 0.221 0.779 30 H 0.044 0.956 31 H 0.052 0.948 32 H 0.112 0.888 33 H 0.104 0.896 34 H 0.160 0.840 35 H 0.160 0.840 36 H 0.161 0.839 37 H 0.162 0.838 38 H 0.087 0.913 39 H 0.106 0.894 40 H 0.102 0.898 41 H 0.104 0.896 42 H 0.108 0.892 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -3.295 -26.301 0.665 26.515 hybrid contribution -0.119 0.335 -0.141 0.383 sum -3.414 -25.965 0.524 26.194 Atomic orbital electron populations 1.69691 1.05092 1.25335 1.57987 1.24738 0.95523 0.97627 1.03257 0.86112 0.78756 0.84205 0.77105 1.20579 1.21953 1.21938 1.19279 0.91019 0.84133 1.42254 0.91142 1.42220 1.06073 0.99472 1.89211 1.20613 0.92358 0.84728 0.98500 1.22271 0.92586 0.93899 0.88393 0.92941 1.22483 0.92246 0.85981 1.03457 1.47840 1.44891 1.34989 1.05806 1.18365 0.80733 0.83841 0.83186 1.90850 1.51629 1.56489 1.40774 1.20033 1.00183 0.95616 0.98352 1.21378 0.97484 0.91471 0.97713 1.21089 0.97768 1.00326 0.98839 1.17965 0.91823 0.83926 0.96370 1.91527 1.73327 1.52036 1.94552 1.21151 1.02594 0.92848 1.01127 1.21134 0.91849 0.97689 0.94736 1.22351 0.97377 0.95142 0.87480 1.22528 1.02786 0.96894 0.98341 1.22106 0.89941 0.88943 0.99380 1.86448 1.44525 1.54242 1.43232 0.93686 0.77864 0.95593 0.94781 0.88792 0.89596 0.83961 0.84011 0.83897 0.83803 0.91269 0.89354 0.89818 0.89605 0.89225 0.93567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.20 13.06 55.49 0.72 -28.48 16 2 C -0.02 -0.47 5.50 -17.43 -0.10 -0.56 16 3 Si 0.91 23.04 29.55 -169.99 -5.02 18.01 16 4 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 6 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 7 C -0.24 -6.86 9.99 -15.06 -0.15 -7.01 16 8 H 0.07 1.98 7.83 -52.49 -0.41 1.57 16 9 N -0.73 -19.51 5.49 -59.91 -0.33 -19.84 16 10 C 0.17 3.54 5.95 -4.04 -0.02 3.52 16 11 C 0.09 1.58 2.73 -25.78 -0.07 1.51 16 12 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 13 C 0.08 1.13 4.82 -3.83 -0.02 1.12 16 14 N -0.60 -7.12 2.19 -173.61 -0.38 -7.50 16 15 C 0.55 7.27 7.27 -12.39 -0.09 7.18 16 16 O -0.52 -8.99 16.38 5.30 0.09 -8.90 16 17 C -0.14 -1.40 5.03 -104.97 -0.53 -1.93 16 18 C -0.06 -0.46 7.44 -39.20 -0.29 -0.75 16 19 C -0.16 -1.09 10.01 -39.57 -0.40 -1.49 16 20 C 0.12 0.95 7.31 -39.27 -0.29 0.67 16 21 F -0.14 -1.18 17.26 2.25 0.04 -1.14 16 22 C -0.16 -1.26 10.01 -39.58 -0.40 -1.66 16 23 C -0.04 -0.34 9.62 -39.20 -0.38 -0.71 16 24 C 0.10 0.81 4.54 -3.18 -0.01 0.80 16 25 C -0.17 -1.54 5.79 -27.17 -0.16 -1.70 16 26 C 0.07 0.96 6.37 36.42 0.23 1.19 16 27 O -0.37 -6.51 9.18 -26.55 -0.24 -6.75 16 28 H 0.25 7.62 8.31 -40.82 -0.34 7.28 16 29 H 0.39 11.11 7.53 -40.82 -0.31 10.80 16 30 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.09 1.38 7.36 -51.93 -0.38 0.99 16 33 H 0.09 1.06 8.11 -51.93 -0.42 0.64 16 34 H 0.14 0.78 5.98 -52.49 -0.31 0.47 16 35 H 0.14 0.64 8.06 -52.49 -0.42 0.22 16 36 H 0.14 0.88 8.06 -52.49 -0.42 0.45 16 37 H 0.14 1.38 8.04 -52.49 -0.42 0.96 16 38 H 0.07 0.42 7.42 -51.93 -0.39 0.03 16 39 H 0.09 0.63 5.20 -51.93 -0.27 0.36 16 40 H 0.08 0.84 8.01 -51.93 -0.42 0.43 16 41 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 43 H 0.05 0.62 7.41 -51.93 -0.38 0.23 16 LS Contribution 354.86 15.07 5.35 5.35 Total: -1.00 -35.03 354.86 -8.25 -43.28 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: -5.81 Total: 5.80 kcal Atomic # 6 Polarization: 2.83 SS G_CDS: -2.66 Total: 0.17 kcal Atomic # 7 Polarization: -55.83 SS G_CDS: 0.02 Total: -55.81 kcal Atomic # 8 Polarization: -15.50 SS G_CDS: -0.16 Total: -15.65 kcal Atomic # 9 Polarization: -1.18 SS G_CDS: 0.04 Total: -1.14 kcal Atomic # 14 Polarization: 23.04 SS G_CDS: -5.02 Total: 18.01 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -35.03 -8.25 -43.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199698745.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.285 kcal (2) G-P(sol) polarization free energy of solvation -35.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds