Wall clock time and date at job start Tue Mar 31 2020 14:02:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86800 * 119.99691 * 2 1 4 4 H 1.48503 * 109.46888 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47142 * 300.00487 * 3 2 1 6 6 H 1.48503 * 109.47017 * 60.00627 * 3 2 1 7 7 C 1.38805 * 119.99949 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99872 * 179.97438 * 7 2 1 9 9 N 1.36942 * 120.00438 * 359.97438 * 7 2 1 10 10 C 1.46504 * 120.00054 * 180.02562 * 9 7 2 11 11 C 1.52994 * 109.46836 * 180.02562 * 10 9 7 12 12 H 1.09006 * 109.47018 * 60.00152 * 11 10 9 13 13 C 1.54806 * 109.47189 * 179.97438 * 11 10 9 14 14 N 1.45120 * 109.53668 * 187.88959 * 13 11 10 15 15 C 1.34773 * 118.75965 * 90.68258 * 14 13 11 16 16 O 1.21570 * 120.00207 * 354.20290 * 15 14 13 17 17 C 1.47723 * 120.00050 * 174.21043 * 15 14 13 18 18 C 1.39658 * 120.11505 * 321.54321 * 17 15 14 19 19 C 1.37842 * 119.87846 * 179.69951 * 18 17 15 20 20 C 1.38658 * 120.11304 * 0.59806 * 19 18 17 21 21 F 1.35101 * 119.87542 * 179.69977 * 20 19 18 22 22 C 1.38655 * 120.24332 * 359.67584 * 20 19 18 23 23 C 1.37833 * 120.11715 * 0.02562 * 22 20 19 24 24 C 1.47528 * 122.47120 * 270.68844 * 14 13 11 25 25 C 1.53576 * 111.02027 * 41.65141 * 24 14 13 26 26 C 1.51539 * 109.58069 * 39.96747 * 25 24 14 27 27 O 1.38019 * 109.47017 * 300.00461 * 11 10 9 28 28 H 0.96996 * 120.00078 * 359.97438 * 1 2 3 29 29 H 0.96998 * 119.99804 * 0.02562 * 9 7 2 30 30 H 1.08993 * 109.47192 * 60.00029 * 10 9 7 31 31 H 1.09001 * 109.46902 * 299.99428 * 10 9 7 32 32 H 1.09003 * 109.45798 * 307.90615 * 13 11 10 33 33 H 1.09007 * 109.45656 * 67.86953 * 13 11 10 34 34 H 1.08000 * 120.06199 * 359.96900 * 18 17 15 35 35 H 1.07992 * 119.94290 * 180.29138 * 19 18 17 36 36 H 1.08000 * 119.94176 * 180.02562 * 22 20 19 37 37 H 1.08001 * 120.05654 * 180.02562 * 23 22 20 38 38 H 1.09001 * 109.18060 * 281.25300 * 24 14 13 39 39 H 1.08995 * 109.15816 * 162.03986 * 24 14 13 40 40 H 1.09001 * 109.45411 * 279.93605 * 25 24 14 41 41 H 1.08994 * 109.45220 * 159.99895 * 25 24 14 42 42 H 1.08996 * 109.59305 * 148.81351 * 26 25 24 43 43 H 1.08998 * 109.71345 * 28.44605 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8913 2.3965 -1.2124 6 1 1.8915 2.3964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0582 -3.6568 -0.0005 11 6 1.0640 -4.8197 -0.0012 12 1 0.4377 -4.7618 -0.8915 13 6 1.8381 -6.1604 -0.0018 14 7 0.9075 -7.2579 -0.1902 15 6 0.6429 -7.6758 -1.4439 16 8 1.0963 -7.0696 -2.3951 17 6 -0.1984 -8.8703 -1.6621 18 6 -0.0811 -9.9743 -0.8148 19 6 -0.8729 -11.0839 -1.0193 20 6 -1.7757 -11.1101 -2.0713 21 9 -2.5450 -12.2026 -2.2709 22 6 -1.8921 -10.0190 -2.9190 23 6 -1.1095 -8.9020 -2.7199 24 6 0.2403 -7.9332 0.9391 25 6 -0.2238 -6.9166 1.9925 26 6 -0.7805 -5.6880 1.3019 27 8 0.2700 -4.7468 1.1254 28 1 -0.4850 0.8400 0.0004 29 1 0.3556 -2.3881 -0.0005 30 1 2.6848 -3.7145 0.8894 31 1 2.6848 -3.7145 -0.8906 32 1 2.5665 -6.1587 -0.8127 33 1 2.3549 -6.2817 0.9502 34 1 0.6256 -9.9569 0.0017 35 1 -0.7864 -11.9363 -0.3618 36 1 -2.5971 -10.0445 -3.7367 37 1 -1.2013 -8.0525 -3.3805 38 1 0.9371 -8.6333 1.4000 39 1 -0.6242 -8.4829 0.5669 40 1 0.6218 -6.6298 2.6175 41 1 -0.9983 -7.3659 2.6140 42 1 -1.5659 -5.2477 1.9162 43 1 -1.1891 -5.9657 0.3303 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001199698745.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:02:31 Heat of formation + Delta-G solvation = -90.657028 kcal Electronic energy + Delta-G solvation = -27340.687615 eV Core-core repulsion = 23300.494444 eV Total energy + Delta-G solvation = -4040.193171 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -50.00507 -41.98770 -40.20368 -39.01451 -36.98948 -36.29414 -34.35414 -32.68297 -32.39271 -32.07457 -30.09105 -27.85420 -26.84146 -25.18841 -24.16015 -23.79075 -22.69228 -22.29249 -20.68112 -19.26461 -18.81059 -18.66264 -17.90780 -17.65765 -17.26581 -16.90312 -16.71278 -16.57173 -16.21900 -15.80961 -15.45598 -15.16346 -14.96443 -14.82813 -14.75713 -14.55141 -14.22735 -14.04397 -13.79350 -13.61897 -13.43717 -13.12525 -13.09069 -12.80016 -12.62676 -12.33912 -12.14850 -12.08006 -11.98811 -11.82418 -11.47622 -11.09043 -10.98925 -10.57180 -10.20604 -9.85385 -9.68515 -9.01269 -7.94234 -5.24079 -0.35278 0.14240 1.46421 1.48823 1.49954 1.59009 1.82178 2.52109 2.56131 2.71187 3.10482 3.30224 3.39261 3.60290 3.65433 3.78462 3.85579 3.98033 4.06201 4.08497 4.14795 4.22890 4.28502 4.37660 4.42658 4.51872 4.65923 4.71742 4.74259 4.79794 4.84589 4.88146 4.99237 5.03909 5.08653 5.12324 5.16202 5.21118 5.46390 5.47966 5.71149 6.16574 6.26471 6.73792 6.96539 7.32590 8.07059 8.32107 9.29976 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.025115 B = 0.002648 C = 0.002578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.611908 B =10569.506485 C =10860.100182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.080 4.080 3 Si 0.979 3.021 4 H -0.264 1.264 5 H -0.293 1.293 6 H -0.291 1.291 7 C -0.245 4.245 8 H 0.079 0.921 9 N -0.741 5.741 10 C 0.163 3.837 11 C 0.103 3.897 12 H 0.017 0.983 13 C 0.095 3.905 14 N -0.599 5.599 15 C 0.547 3.453 16 O -0.576 6.576 17 C -0.154 4.154 18 C -0.050 4.050 19 C -0.149 4.149 20 C 0.113 3.887 21 F -0.139 7.139 22 C -0.158 4.158 23 C -0.050 4.050 24 C 0.093 3.907 25 C -0.157 4.157 26 C 0.063 3.937 27 O -0.395 6.395 28 H 0.251 0.749 29 H 0.373 0.627 30 H 0.036 0.964 31 H 0.035 0.965 32 H 0.082 0.918 33 H 0.111 0.889 34 H 0.169 0.831 35 H 0.173 0.827 36 H 0.156 0.844 37 H 0.129 0.871 38 H 0.108 0.892 39 H 0.105 0.895 40 H 0.080 0.920 41 H 0.121 0.879 42 H 0.093 0.907 43 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.101 -29.502 2.876 29.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.272 4.272 3 Si 0.808 3.192 4 H -0.188 1.188 5 H -0.220 1.220 6 H -0.218 1.218 7 C -0.377 4.377 8 H 0.097 0.903 9 N -0.383 5.383 10 C 0.035 3.965 11 C 0.043 3.957 12 H 0.035 0.965 13 C -0.029 4.029 14 N -0.330 5.330 15 C 0.337 3.663 16 O -0.456 6.456 17 C -0.157 4.157 18 C -0.068 4.068 19 C -0.167 4.167 20 C 0.094 3.906 21 F -0.117 7.117 22 C -0.177 4.177 23 C -0.069 4.069 24 C -0.027 4.027 25 C -0.195 4.195 26 C -0.013 4.013 27 O -0.314 6.314 28 H 0.060 0.940 29 H 0.205 0.795 30 H 0.054 0.946 31 H 0.052 0.948 32 H 0.101 0.899 33 H 0.129 0.871 34 H 0.187 0.813 35 H 0.191 0.809 36 H 0.174 0.826 37 H 0.147 0.853 38 H 0.126 0.874 39 H 0.123 0.877 40 H 0.099 0.901 41 H 0.139 0.861 42 H 0.111 0.889 43 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -2.673 -29.018 2.549 29.252 hybrid contribution -0.385 1.079 -0.709 1.347 sum -3.057 -27.939 1.840 28.166 Atomic orbital electron populations 1.69865 1.06806 1.25981 1.59585 1.25661 0.96484 1.01364 1.03663 0.84986 0.78225 0.79318 0.76687 1.18792 1.22043 1.21784 1.19726 0.91600 0.85214 1.41146 0.90326 1.42436 1.05648 1.00967 1.89269 1.20768 0.93103 0.84035 0.98547 1.21893 0.91836 0.94764 0.87184 0.96474 1.22180 0.91882 0.84636 1.04229 1.47928 1.44347 1.34096 1.06655 1.18911 0.80239 0.84295 0.82859 1.90816 1.53843 1.58461 1.42514 1.19887 1.00552 0.95462 0.99846 1.21577 0.97508 0.90245 0.97448 1.21393 0.96226 1.00779 0.98290 1.18153 0.92057 0.83624 0.96768 1.91526 1.73492 1.52099 1.94619 1.21236 1.02422 0.92385 1.01635 1.21092 0.92834 0.98043 0.94960 1.22721 0.98749 0.95146 0.86112 1.22457 1.03522 0.95074 0.98411 1.22392 0.89192 0.90124 0.99546 1.86366 1.45729 1.56666 1.42667 0.94036 0.79515 0.94648 0.94774 0.89924 0.87136 0.81324 0.80911 0.82630 0.85264 0.87403 0.87729 0.90108 0.86112 0.88880 0.94498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -62.56 13.06 21.65 0.28 -62.27 16 2 C -0.08 -4.82 5.50 84.86 0.47 -4.36 16 3 Si 0.98 47.95 29.55 68.60 2.03 49.98 16 4 H -0.26 -12.04 7.11 99.48 0.71 -11.33 16 5 H -0.29 -14.31 7.11 99.48 0.71 -13.60 16 6 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 7 C -0.25 -14.53 9.99 84.03 0.84 -13.69 16 8 H 0.08 4.42 7.83 -2.91 -0.02 4.40 16 9 N -0.74 -41.26 5.49 -343.46 -1.89 -43.14 16 10 C 0.16 7.13 5.95 86.38 0.51 7.65 16 11 C 0.10 3.82 2.73 31.21 0.09 3.91 16 12 H 0.02 0.75 8.14 -2.38 -0.02 0.73 16 13 C 0.09 2.61 4.82 87.25 0.42 3.03 16 14 N -0.60 -13.40 2.19 -821.45 -1.80 -15.20 16 15 C 0.55 14.47 7.27 86.75 0.63 15.10 16 16 O -0.58 -21.01 16.38 -3.94 -0.06 -21.07 16 17 C -0.15 -2.95 5.03 -20.09 -0.10 -3.05 16 18 C -0.05 -0.55 7.44 22.52 0.17 -0.39 16 19 C -0.15 -1.42 10.01 22.28 0.22 -1.20 16 20 C 0.11 1.53 7.31 22.47 0.16 1.70 16 21 F -0.14 -2.06 17.26 44.97 0.78 -1.29 16 22 C -0.16 -2.36 10.01 22.27 0.22 -2.14 16 23 C -0.05 -0.96 9.62 22.51 0.22 -0.74 16 24 C 0.09 1.19 4.54 86.38 0.39 1.58 16 25 C -0.16 -2.39 5.79 30.31 0.18 -2.22 16 26 C 0.06 1.63 6.37 71.50 0.46 2.08 16 27 O -0.40 -14.29 9.18 -117.91 -1.08 -15.37 16 28 H 0.25 15.49 8.31 -92.71 -0.77 14.72 16 29 H 0.37 22.49 7.53 -92.71 -0.70 21.79 16 30 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.03 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.08 2.47 7.36 -2.39 -0.02 2.45 16 33 H 0.11 2.49 8.11 -2.38 -0.02 2.47 16 34 H 0.17 0.97 5.98 -2.91 -0.02 0.95 16 35 H 0.17 0.62 8.06 -2.91 -0.02 0.60 16 36 H 0.16 1.79 8.06 -2.91 -0.02 1.77 16 37 H 0.13 2.75 8.04 -2.91 -0.02 2.73 16 38 H 0.11 0.67 7.42 -2.39 -0.02 0.66 16 39 H 0.10 1.06 5.20 -2.39 -0.01 1.04 16 40 H 0.08 1.35 8.01 -2.39 -0.02 1.34 16 41 H 0.12 1.07 8.14 -2.39 -0.02 1.05 16 42 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 43 H 0.04 1.00 7.41 -2.39 -0.02 0.98 16 Total: -1.00 -79.97 354.86 3.47 -76.50 By element: Atomic # 1 Polarization: 24.25 SS G_CDS: 0.34 Total: 24.59 kcal Atomic # 6 Polarization: 2.40 SS G_CDS: 4.87 Total: 7.27 kcal Atomic # 7 Polarization: -117.21 SS G_CDS: -3.40 Total: -120.61 kcal Atomic # 8 Polarization: -35.30 SS G_CDS: -1.15 Total: -36.45 kcal Atomic # 9 Polarization: -2.06 SS G_CDS: 0.78 Total: -1.29 kcal Atomic # 14 Polarization: 47.95 SS G_CDS: 2.03 Total: 49.98 kcal Total: -79.97 3.47 -76.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199698745.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.153 kcal (2) G-P(sol) polarization free energy of solvation -79.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds