Wall clock time and date at job start Tue Mar 31 2020 14:02:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86797 * 119.99904 * 2 1 4 4 H 1.48500 * 109.46948 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47375 * 300.00134 * 3 2 1 6 6 H 1.48503 * 109.47291 * 60.00385 * 3 2 1 7 7 C 1.38810 * 119.99769 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99835 * 179.97438 * 7 2 1 9 9 N 1.36943 * 120.00373 * 0.02562 * 7 2 1 10 10 C 1.46490 * 120.00126 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47325 * 179.97438 * 10 9 7 12 12 H 1.08996 * 109.46698 * 304.99970 * 11 10 9 13 13 C 1.54800 * 109.47367 * 185.00255 * 11 10 9 14 14 N 1.45120 * 109.53354 * 172.10687 * 13 11 10 15 15 C 1.34771 * 118.75616 * 269.29369 * 14 13 11 16 16 O 1.21571 * 120.00076 * 5.75966 * 15 14 13 17 17 C 1.47723 * 120.00033 * 185.75600 * 15 14 13 18 18 C 1.39651 * 120.12153 * 219.16115 * 17 15 14 19 19 C 1.37838 * 119.88149 * 179.97438 * 18 17 15 20 20 C 1.38653 * 120.11644 * 359.97438 * 19 18 17 21 21 F 1.35104 * 119.87672 * 179.74183 * 20 19 18 22 22 C 1.38660 * 120.24354 * 0.02562 * 20 19 18 23 23 C 1.37839 * 120.11572 * 0.02562 * 22 20 19 24 24 C 1.47507 * 122.48346 * 89.56743 * 14 13 11 25 25 C 1.53949 * 110.82409 * 317.97518 * 24 14 13 26 26 C 1.51533 * 109.72783 * 320.30917 * 25 24 14 27 27 O 1.38021 * 109.46768 * 64.98652 * 11 10 9 28 28 H 0.96996 * 119.99701 * 0.02562 * 1 2 3 29 29 H 0.96993 * 119.99296 * 359.97438 * 9 7 2 30 30 H 1.09010 * 109.47238 * 60.00083 * 10 9 7 31 31 H 1.08996 * 109.47867 * 300.00184 * 10 9 7 32 32 H 1.09001 * 109.46036 * 52.08840 * 13 11 10 33 33 H 1.09010 * 109.46173 * 292.12557 * 13 11 10 34 34 H 1.08000 * 120.05696 * 359.95441 * 18 17 15 35 35 H 1.08001 * 119.93811 * 179.97438 * 19 18 17 36 36 H 1.07999 * 119.94066 * 179.97438 * 22 20 19 37 37 H 1.07996 * 120.05586 * 179.97438 * 23 22 20 38 38 H 1.08997 * 109.17127 * 78.49764 * 24 14 13 39 39 H 1.08998 * 109.16569 * 197.69609 * 24 14 13 40 40 H 1.08995 * 109.46298 * 200.17939 * 25 24 14 41 41 H 1.09004 * 109.27329 * 80.32551 * 25 24 14 42 42 H 1.09002 * 109.58772 * 331.50960 * 26 25 24 43 43 H 1.08996 * 109.58794 * 211.07507 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3965 -1.2124 6 1 1.8915 2.3964 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0016 10 6 2.0580 -3.6568 -0.0027 11 6 1.0638 -4.8197 -0.0031 12 1 0.3801 -4.7134 0.8390 13 6 1.8336 -6.1568 0.1229 14 7 0.8906 -7.2439 0.3102 15 6 0.5436 -7.5922 1.5650 16 8 0.9355 -6.9340 2.5090 17 6 -0.3130 -8.7739 1.7933 18 6 -1.3051 -8.7410 2.7756 19 6 -2.1020 -9.8462 2.9841 20 6 -1.9202 -10.9890 2.2203 21 9 -2.7005 -12.0713 2.4324 22 6 -0.9367 -11.0271 1.2437 23 6 -0.1336 -9.9279 1.0276 24 6 0.3021 -7.9857 -0.8208 25 6 -0.0943 -7.0263 -1.9577 26 6 -0.6926 -5.7621 -1.3747 27 8 0.3462 -4.8110 -1.1821 28 1 -0.4849 0.8400 -0.0004 29 1 0.3556 -2.3880 -0.0016 30 1 2.6847 -3.7153 0.8873 31 1 2.6847 -3.7138 -0.8927 32 1 2.5071 -6.1088 0.9787 33 1 2.4119 -6.3300 -0.7848 34 1 -1.4475 -7.8512 3.3710 35 1 -2.8692 -9.8219 3.7438 36 1 -0.7991 -11.9200 0.6518 37 1 0.6324 -9.9588 0.2669 38 1 1.0298 -8.7066 -1.1934 39 1 -0.5842 -8.5187 -0.4767 40 1 -0.8271 -7.5108 -2.6028 41 1 0.7915 -6.7736 -2.5404 42 1 -1.1632 -5.9880 -0.4178 43 1 -1.4349 -5.3580 -2.0631 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001199698749.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:02:34 Heat of formation + Delta-G solvation = -67.985461 kcal Electronic energy + Delta-G solvation = -27336.550515 eV Core-core repulsion = 23297.340456 eV Total energy + Delta-G solvation = -4039.210058 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.36754 -41.02169 -39.20659 -38.04156 -35.77631 -34.60410 -32.89061 -31.73793 -31.35049 -30.87553 -28.69243 -26.75431 -25.45435 -23.82088 -23.46111 -22.42714 -21.65512 -20.95534 -19.81015 -18.04798 -17.90619 -17.13829 -16.95613 -16.44769 -16.30895 -16.01706 -15.76177 -15.46991 -14.75189 -14.70484 -14.30517 -14.21557 -13.91272 -13.77535 -13.50814 -13.29129 -13.11641 -12.88639 -12.71428 -12.55241 -12.27102 -12.01096 -11.68301 -11.48654 -11.39354 -10.97850 -10.79688 -10.77256 -10.28184 -10.08021 -9.91484 -9.66302 -9.60856 -9.42359 -9.14493 -8.81508 -8.61807 -6.82549 -5.67579 -2.95695 0.34478 0.73404 2.41741 2.71451 3.22606 3.49036 3.54031 3.56684 3.72321 3.94937 4.08852 4.22952 4.36414 4.53190 4.62205 4.68590 4.75304 4.83058 4.91712 5.18977 5.20602 5.32019 5.36931 5.41208 5.43243 5.46987 5.57311 5.59383 5.65597 5.67819 5.80824 5.83810 5.95326 5.98381 6.09996 6.30310 6.35265 6.44672 6.67735 6.80205 7.09169 7.77061 7.94528 8.01094 8.50737 9.62238 10.20606 10.56347 11.55479 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.024311 B = 0.002669 C = 0.002585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.459626 B =10489.404790 C =10827.215393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.016 4.016 3 Si 0.907 3.093 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.236 4.236 8 H 0.071 0.929 9 N -0.726 5.726 10 C 0.166 3.834 11 C 0.088 3.912 12 H 0.054 0.946 13 C 0.082 3.918 14 N -0.603 5.603 15 C 0.551 3.449 16 O -0.521 6.521 17 C -0.138 4.138 18 C -0.036 4.036 19 C -0.158 4.158 20 C 0.118 3.882 21 F -0.136 7.136 22 C -0.161 4.161 23 C -0.062 4.062 24 C 0.098 3.902 25 C -0.167 4.167 26 C 0.073 3.927 27 O -0.368 6.368 28 H 0.253 0.747 29 H 0.387 0.613 30 H 0.035 0.965 31 H 0.027 0.973 32 H 0.094 0.906 33 H 0.086 0.914 34 H 0.144 0.856 35 H 0.143 0.857 36 H 0.142 0.858 37 H 0.142 0.858 38 H 0.069 0.931 39 H 0.088 0.912 40 H 0.085 0.915 41 H 0.083 0.917 42 H 0.046 0.954 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.637 -26.884 -0.698 27.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.211 4.211 3 Si 0.739 3.261 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.367 4.367 8 H 0.089 0.911 9 N -0.370 5.370 10 C 0.038 3.962 11 C 0.028 3.972 12 H 0.072 0.928 13 C -0.041 4.041 14 N -0.336 5.336 15 C 0.338 3.662 16 O -0.397 6.397 17 C -0.141 4.141 18 C -0.054 4.054 19 C -0.177 4.177 20 C 0.099 3.901 21 F -0.114 7.114 22 C -0.180 4.180 23 C -0.080 4.080 24 C -0.024 4.024 25 C -0.205 4.205 26 C -0.003 4.003 27 O -0.286 6.286 28 H 0.063 0.937 29 H 0.220 0.780 30 H 0.052 0.948 31 H 0.045 0.955 32 H 0.112 0.888 33 H 0.104 0.896 34 H 0.162 0.838 35 H 0.161 0.839 36 H 0.160 0.840 37 H 0.160 0.840 38 H 0.088 0.912 39 H 0.106 0.894 40 H 0.104 0.896 41 H 0.101 0.899 42 H 0.065 0.935 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -3.248 -26.320 -0.343 26.522 hybrid contribution -0.133 0.343 0.159 0.401 sum -3.381 -25.977 -0.184 26.197 Atomic orbital electron populations 1.69691 1.05101 1.25351 1.57980 1.24742 0.95527 0.97643 1.03238 0.86107 0.78755 0.84181 0.77106 1.20574 1.21934 1.21948 1.19277 0.91026 0.84115 1.42270 0.91121 1.42234 1.06022 0.99534 1.89246 1.20608 0.92399 0.84658 0.98532 1.22274 0.93775 0.93870 0.87240 0.92844 1.22480 0.91878 0.86282 1.03509 1.47837 1.45122 1.35031 1.05566 1.18370 0.80575 0.84042 0.83171 1.90855 1.54190 1.53136 1.41476 1.20034 0.99401 0.95257 0.99448 1.21137 0.91718 0.98252 0.94333 1.21153 1.02514 0.92333 1.01690 1.17963 0.91260 0.83969 0.96917 1.91528 1.72964 1.52980 1.93975 1.21087 0.96808 1.00464 0.99643 1.21360 0.97993 0.91288 0.97407 1.22417 0.98531 0.94314 0.87105 1.22591 1.02977 0.97116 0.97843 1.22102 0.89946 0.88402 0.99896 1.86441 1.48004 1.55543 1.38603 0.93676 0.77954 0.94758 0.95489 0.88782 0.89617 0.83804 0.83893 0.84016 0.83997 0.91249 0.89368 0.89631 0.89864 0.93535 0.89219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.22 13.06 55.49 0.72 -28.49 16 2 C -0.02 -0.47 5.50 -17.43 -0.10 -0.57 16 3 Si 0.91 23.05 29.55 -169.99 -5.02 18.02 16 4 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 6 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 7 C -0.24 -6.87 9.99 -15.06 -0.15 -7.02 16 8 H 0.07 1.98 7.83 -52.48 -0.41 1.57 16 9 N -0.73 -19.54 5.54 -59.91 -0.33 -19.87 16 10 C 0.17 3.54 5.92 -4.05 -0.02 3.52 16 11 C 0.09 1.58 2.68 -25.78 -0.07 1.51 16 12 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 13 C 0.08 1.14 4.82 -3.83 -0.02 1.12 16 14 N -0.60 -7.13 2.18 -173.40 -0.38 -7.51 16 15 C 0.55 7.30 7.26 -12.39 -0.09 7.21 16 16 O -0.52 -9.05 16.40 5.30 0.09 -8.96 16 17 C -0.14 -1.40 5.01 -104.97 -0.53 -1.93 16 18 C -0.04 -0.34 9.63 -39.20 -0.38 -0.72 16 19 C -0.16 -1.27 10.01 -39.57 -0.40 -1.67 16 20 C 0.12 0.95 7.31 -39.27 -0.29 0.67 16 21 F -0.14 -1.18 17.26 2.25 0.04 -1.14 16 22 C -0.16 -1.09 10.01 -39.57 -0.40 -1.49 16 23 C -0.06 -0.46 7.45 -39.20 -0.29 -0.75 16 24 C 0.10 0.81 4.59 -3.00 -0.01 0.80 16 25 C -0.17 -1.53 5.79 -26.98 -0.16 -1.68 16 26 C 0.07 0.96 6.38 36.42 0.23 1.19 16 27 O -0.37 -6.49 9.38 -26.56 -0.25 -6.74 16 28 H 0.25 7.62 8.31 -40.82 -0.34 7.28 16 29 H 0.39 11.09 7.65 -40.82 -0.31 10.78 16 30 H 0.03 0.73 8.14 -51.92 -0.42 0.30 16 31 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.09 1.39 7.36 -51.93 -0.38 1.00 16 33 H 0.09 1.05 8.11 -51.92 -0.42 0.63 16 34 H 0.14 1.39 8.05 -52.49 -0.42 0.97 16 35 H 0.14 0.89 8.06 -52.49 -0.42 0.46 16 36 H 0.14 0.65 8.06 -52.49 -0.42 0.22 16 37 H 0.14 0.78 6.04 -52.49 -0.32 0.46 16 38 H 0.07 0.42 7.44 -51.93 -0.39 0.03 16 39 H 0.09 0.63 5.21 -51.93 -0.27 0.36 16 40 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.08 0.83 8.01 -51.93 -0.42 0.41 16 42 H 0.05 0.62 7.41 -51.93 -0.38 0.24 16 43 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 LS Contribution 355.28 15.07 5.35 5.35 Total: -1.00 -35.06 355.28 -8.26 -43.32 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: -5.82 Total: 5.82 kcal Atomic # 6 Polarization: 2.85 SS G_CDS: -2.66 Total: 0.19 kcal Atomic # 7 Polarization: -55.89 SS G_CDS: 0.01 Total: -55.87 kcal Atomic # 8 Polarization: -15.54 SS G_CDS: -0.16 Total: -15.70 kcal Atomic # 9 Polarization: -1.18 SS G_CDS: 0.04 Total: -1.14 kcal Atomic # 14 Polarization: 23.05 SS G_CDS: -5.02 Total: 18.02 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -35.06 -8.26 -43.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199698749.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.667 kcal (2) G-P(sol) polarization free energy of solvation -35.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds