Wall clock time and date at job start Tue Mar 31 2020 14:02:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86797 * 119.99904 * 2 1 4 4 H 1.48500 * 109.46948 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47375 * 300.00134 * 3 2 1 6 6 H 1.48503 * 109.47291 * 60.00385 * 3 2 1 7 7 C 1.38810 * 119.99769 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99835 * 179.97438 * 7 2 1 9 9 N 1.36943 * 120.00373 * 0.02562 * 7 2 1 10 10 C 1.46490 * 120.00126 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47325 * 179.97438 * 10 9 7 12 12 H 1.08996 * 109.46698 * 304.99970 * 11 10 9 13 13 C 1.54800 * 109.47367 * 185.00255 * 11 10 9 14 14 N 1.45120 * 109.53354 * 172.10687 * 13 11 10 15 15 C 1.34771 * 118.75616 * 269.29369 * 14 13 11 16 16 O 1.21571 * 120.00076 * 5.75966 * 15 14 13 17 17 C 1.47723 * 120.00033 * 185.75600 * 15 14 13 18 18 C 1.39651 * 120.12153 * 219.16115 * 17 15 14 19 19 C 1.37838 * 119.88149 * 179.97438 * 18 17 15 20 20 C 1.38653 * 120.11644 * 359.97438 * 19 18 17 21 21 F 1.35104 * 119.87672 * 179.74183 * 20 19 18 22 22 C 1.38660 * 120.24354 * 0.02562 * 20 19 18 23 23 C 1.37839 * 120.11572 * 0.02562 * 22 20 19 24 24 C 1.47507 * 122.48346 * 89.56743 * 14 13 11 25 25 C 1.53949 * 110.82409 * 317.97518 * 24 14 13 26 26 C 1.51533 * 109.72783 * 320.30917 * 25 24 14 27 27 O 1.38021 * 109.46768 * 64.98652 * 11 10 9 28 28 H 0.96996 * 119.99701 * 0.02562 * 1 2 3 29 29 H 0.96993 * 119.99296 * 359.97438 * 9 7 2 30 30 H 1.09010 * 109.47238 * 60.00083 * 10 9 7 31 31 H 1.08996 * 109.47867 * 300.00184 * 10 9 7 32 32 H 1.09001 * 109.46036 * 52.08840 * 13 11 10 33 33 H 1.09010 * 109.46173 * 292.12557 * 13 11 10 34 34 H 1.08000 * 120.05696 * 359.95441 * 18 17 15 35 35 H 1.08001 * 119.93811 * 179.97438 * 19 18 17 36 36 H 1.07999 * 119.94066 * 179.97438 * 22 20 19 37 37 H 1.07996 * 120.05586 * 179.97438 * 23 22 20 38 38 H 1.08997 * 109.17127 * 78.49764 * 24 14 13 39 39 H 1.08998 * 109.16569 * 197.69609 * 24 14 13 40 40 H 1.08995 * 109.46298 * 200.17939 * 25 24 14 41 41 H 1.09004 * 109.27329 * 80.32551 * 25 24 14 42 42 H 1.09002 * 109.58772 * 331.50960 * 26 25 24 43 43 H 1.08996 * 109.58794 * 211.07507 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3965 -1.2124 6 1 1.8915 2.3964 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0016 10 6 2.0580 -3.6568 -0.0027 11 6 1.0638 -4.8197 -0.0031 12 1 0.3801 -4.7134 0.8390 13 6 1.8336 -6.1568 0.1229 14 7 0.8906 -7.2439 0.3102 15 6 0.5436 -7.5922 1.5650 16 8 0.9355 -6.9340 2.5090 17 6 -0.3130 -8.7739 1.7933 18 6 -1.3051 -8.7410 2.7756 19 6 -2.1020 -9.8462 2.9841 20 6 -1.9202 -10.9890 2.2203 21 9 -2.7005 -12.0713 2.4324 22 6 -0.9367 -11.0271 1.2437 23 6 -0.1336 -9.9279 1.0276 24 6 0.3021 -7.9857 -0.8208 25 6 -0.0943 -7.0263 -1.9577 26 6 -0.6926 -5.7621 -1.3747 27 8 0.3462 -4.8110 -1.1821 28 1 -0.4849 0.8400 -0.0004 29 1 0.3556 -2.3880 -0.0016 30 1 2.6847 -3.7153 0.8873 31 1 2.6847 -3.7138 -0.8927 32 1 2.5071 -6.1088 0.9787 33 1 2.4119 -6.3300 -0.7848 34 1 -1.4475 -7.8512 3.3710 35 1 -2.8692 -9.8219 3.7438 36 1 -0.7991 -11.9200 0.6518 37 1 0.6324 -9.9588 0.2669 38 1 1.0298 -8.7066 -1.1934 39 1 -0.5842 -8.5187 -0.4767 40 1 -0.8271 -7.5108 -2.6028 41 1 0.7915 -6.7736 -2.5404 42 1 -1.1632 -5.9880 -0.4178 43 1 -1.4349 -5.3580 -2.0631 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001199698749.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:02:34 Heat of formation + Delta-G solvation = -91.179918 kcal Electronic energy + Delta-G solvation = -27337.556302 eV Core-core repulsion = 23297.340456 eV Total energy + Delta-G solvation = -4040.215846 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -50.00444 -41.98403 -40.20295 -39.01589 -36.98125 -36.30805 -34.34708 -32.68212 -32.39149 -32.07603 -30.08242 -27.85790 -26.84340 -25.18910 -24.15587 -23.79159 -22.69974 -22.30532 -20.68137 -19.27217 -18.81273 -18.66269 -17.90466 -17.65903 -17.27004 -16.89583 -16.71640 -16.57508 -16.21632 -15.80537 -15.45586 -15.16988 -14.95774 -14.82848 -14.76683 -14.55357 -14.22764 -14.02915 -13.80500 -13.62519 -13.44071 -13.13143 -13.09535 -12.80125 -12.62521 -12.34012 -12.14664 -12.08327 -11.98949 -11.82590 -11.48263 -11.09062 -10.99328 -10.58014 -10.20832 -9.85388 -9.68736 -9.02040 -7.94741 -5.24701 -0.35070 0.14069 1.46272 1.48715 1.49702 1.58912 1.82173 2.51592 2.55903 2.70918 3.10413 3.30163 3.38949 3.60019 3.65336 3.78043 3.84956 3.98168 4.06435 4.08507 4.14659 4.22670 4.28333 4.36549 4.42621 4.52873 4.65878 4.71549 4.74173 4.79899 4.84528 4.88322 4.99110 5.03742 5.08517 5.12074 5.16171 5.20962 5.46370 5.47753 5.71028 6.16463 6.25999 6.73164 6.96552 7.31895 8.06037 8.30906 9.29518 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.024311 B = 0.002669 C = 0.002585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.459626 B =10489.404790 C =10827.215393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.080 4.080 3 Si 0.980 3.020 4 H -0.263 1.263 5 H -0.291 1.291 6 H -0.293 1.293 7 C -0.245 4.245 8 H 0.079 0.921 9 N -0.742 5.742 10 C 0.163 3.837 11 C 0.104 3.896 12 H 0.017 0.983 13 C 0.095 3.905 14 N -0.599 5.599 15 C 0.547 3.453 16 O -0.576 6.576 17 C -0.154 4.154 18 C -0.051 4.051 19 C -0.158 4.158 20 C 0.113 3.887 21 F -0.139 7.139 22 C -0.148 4.148 23 C -0.049 4.049 24 C 0.093 3.907 25 C -0.157 4.157 26 C 0.063 3.937 27 O -0.396 6.396 28 H 0.251 0.749 29 H 0.372 0.628 30 H 0.036 0.964 31 H 0.036 0.964 32 H 0.082 0.918 33 H 0.111 0.889 34 H 0.129 0.871 35 H 0.156 0.844 36 H 0.174 0.826 37 H 0.169 0.831 38 H 0.108 0.892 39 H 0.104 0.896 40 H 0.121 0.879 41 H 0.081 0.919 42 H 0.036 0.964 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.891 -29.653 -2.457 29.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.272 4.272 3 Si 0.808 3.192 4 H -0.188 1.188 5 H -0.218 1.218 6 H -0.220 1.220 7 C -0.377 4.377 8 H 0.097 0.903 9 N -0.384 5.384 10 C 0.036 3.964 11 C 0.043 3.957 12 H 0.035 0.965 13 C -0.029 4.029 14 N -0.330 5.330 15 C 0.337 3.663 16 O -0.457 6.457 17 C -0.157 4.157 18 C -0.070 4.070 19 C -0.177 4.177 20 C 0.094 3.906 21 F -0.117 7.117 22 C -0.166 4.166 23 C -0.068 4.068 24 C -0.027 4.027 25 C -0.194 4.194 26 C -0.012 4.012 27 O -0.315 6.315 28 H 0.060 0.940 29 H 0.204 0.796 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.100 0.900 33 H 0.130 0.870 34 H 0.147 0.853 35 H 0.174 0.826 36 H 0.191 0.809 37 H 0.187 0.813 38 H 0.126 0.874 39 H 0.122 0.878 40 H 0.139 0.861 41 H 0.099 0.901 42 H 0.054 0.946 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -2.484 -29.151 -2.137 29.335 hybrid contribution -0.442 1.119 0.691 1.388 sum -2.926 -28.032 -1.446 28.221 Atomic orbital electron populations 1.69866 1.06825 1.25999 1.59587 1.25670 0.96489 1.01396 1.03643 0.84980 0.78236 0.79279 0.76686 1.18757 1.21786 1.22037 1.19728 0.91618 0.85190 1.41153 0.90278 1.42457 1.05591 1.01049 1.89306 1.20764 0.93125 0.83956 0.98591 1.21887 0.92798 0.94775 0.86200 0.96515 1.22179 0.91648 0.84967 1.04127 1.47926 1.44446 1.34253 1.06409 1.18921 0.80123 0.84423 0.82879 1.90820 1.56369 1.55210 1.43254 1.19887 0.99612 0.95184 1.01021 1.21090 0.92664 0.98513 0.94721 1.21235 1.02434 0.91934 1.02049 1.18149 0.91568 0.83655 0.97241 1.91527 1.73143 1.53023 1.94039 1.21393 0.95318 1.01101 0.98836 1.21560 0.98205 0.89961 0.97033 1.22792 1.00170 0.94279 0.85503 1.22518 1.03513 0.95156 0.98261 1.22391 0.89304 0.89694 0.99858 1.86359 1.49236 1.57927 1.37964 0.94029 0.79626 0.94644 0.94622 0.89997 0.87041 0.85318 0.82640 0.80892 0.81334 0.87372 0.87771 0.86128 0.90071 0.94556 0.88772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -62.67 13.06 21.65 0.28 -62.39 16 2 C -0.08 -4.84 5.50 84.86 0.47 -4.38 16 3 Si 0.98 47.99 29.55 68.60 2.03 50.02 16 4 H -0.26 -12.02 7.11 99.48 0.71 -11.31 16 5 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16 6 H -0.29 -14.31 7.11 99.48 0.71 -13.60 16 7 C -0.25 -14.54 9.99 84.03 0.84 -13.70 16 8 H 0.08 4.45 7.83 -2.91 -0.02 4.43 16 9 N -0.74 -41.37 5.54 -343.46 -1.90 -43.28 16 10 C 0.16 7.14 5.92 86.38 0.51 7.65 16 11 C 0.10 3.83 2.68 31.21 0.08 3.91 16 12 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 13 C 0.10 2.61 4.82 87.25 0.42 3.03 16 14 N -0.60 -13.43 2.18 -820.78 -1.79 -15.22 16 15 C 0.55 14.57 7.26 86.75 0.63 15.20 16 16 O -0.58 -21.23 16.40 -3.94 -0.06 -21.30 16 17 C -0.15 -2.96 5.01 -20.09 -0.10 -3.06 16 18 C -0.05 -0.98 9.63 22.52 0.22 -0.77 16 19 C -0.16 -2.38 10.01 22.27 0.22 -2.15 16 20 C 0.11 1.54 7.31 22.47 0.16 1.71 16 21 F -0.14 -2.07 17.26 44.97 0.78 -1.29 16 22 C -0.15 -1.42 10.01 22.28 0.22 -1.20 16 23 C -0.05 -0.56 7.45 22.52 0.17 -0.39 16 24 C 0.09 1.18 4.59 86.51 0.40 1.58 16 25 C -0.16 -2.36 5.79 30.43 0.18 -2.18 16 26 C 0.06 1.62 6.38 71.50 0.46 2.07 16 27 O -0.40 -14.20 9.38 -117.94 -1.11 -15.31 16 28 H 0.25 15.52 8.31 -92.71 -0.77 14.75 16 29 H 0.37 22.48 7.65 -92.71 -0.71 21.77 16 30 H 0.04 1.55 8.14 -2.38 -0.02 1.53 16 31 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.08 2.46 7.36 -2.39 -0.02 2.45 16 33 H 0.11 2.49 8.11 -2.38 -0.02 2.47 16 34 H 0.13 2.78 8.05 -2.91 -0.02 2.76 16 35 H 0.16 1.82 8.06 -2.91 -0.02 1.79 16 36 H 0.17 0.63 8.06 -2.91 -0.02 0.60 16 37 H 0.17 0.97 6.04 -2.91 -0.02 0.95 16 38 H 0.11 0.67 7.44 -2.39 -0.02 0.65 16 39 H 0.10 1.05 5.21 -2.39 -0.01 1.04 16 40 H 0.12 1.04 8.14 -2.39 -0.02 1.02 16 41 H 0.08 1.33 8.01 -2.38 -0.02 1.31 16 42 H 0.04 0.98 7.41 -2.39 -0.02 0.97 16 43 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 Total: -1.00 -80.23 355.28 3.43 -76.80 By element: Atomic # 1 Polarization: 24.31 SS G_CDS: 0.33 Total: 24.64 kcal Atomic # 6 Polarization: 2.45 SS G_CDS: 4.87 Total: 7.32 kcal Atomic # 7 Polarization: -117.48 SS G_CDS: -3.41 Total: -120.89 kcal Atomic # 8 Polarization: -35.43 SS G_CDS: -1.17 Total: -36.61 kcal Atomic # 9 Polarization: -2.07 SS G_CDS: 0.78 Total: -1.29 kcal Atomic # 14 Polarization: 47.99 SS G_CDS: 2.03 Total: 50.02 kcal Total: -80.23 3.43 -76.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199698749.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.376 kcal (2) G-P(sol) polarization free energy of solvation -80.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds