Wall clock time and date at job start Tue Mar 31 2020 13:57:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31561 * 1 3 3 Si 1.86801 * 119.99727 * 2 1 4 4 H 1.48500 * 109.47078 * 269.99950 * 3 2 1 5 5 H 1.48497 * 109.47236 * 30.00323 * 3 2 1 6 6 H 1.48497 * 109.46795 * 150.00594 * 3 2 1 7 7 C 1.38651 * 119.99908 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99923 * 359.97438 * 7 2 1 9 9 O 1.34829 * 120.00042 * 179.97438 * 7 2 1 10 10 C 1.35744 * 117.00210 * 185.05551 * 9 7 2 11 11 C 1.38881 * 120.07158 * 354.46358 * 10 9 7 12 12 C 1.38099 * 119.93237 * 180.02562 * 11 10 9 13 13 C 1.38296 * 120.07178 * 0.02562 * 12 11 10 14 14 C 1.50699 * 119.93300 * 179.97438 * 13 12 11 15 15 N 1.46898 * 109.47073 * 89.99702 * 14 13 12 16 16 C 1.46894 * 111.00061 * 179.97438 * 15 14 13 17 17 C 1.50703 * 109.47425 * 180.02562 * 16 15 14 18 18 C 1.38830 * 119.73436 * 269.72748 * 17 16 15 19 19 C 1.37754 * 120.66747 * 179.75652 * 18 17 16 20 20 C 1.39124 * 119.77466 * 0.51730 * 19 18 17 21 21 N 1.37682 * 133.50798 * 179.77379 * 20 19 18 22 22 H 0.96998 * 125.06525 * 359.97438 * 21 20 19 23 23 C 1.36839 * 109.87349 * 179.97438 * 21 20 19 24 24 C 1.34234 * 109.93177 * 359.97438 * 23 21 20 25 25 C 1.40675 * 119.33463 * 359.73965 * 20 19 18 26 26 C 1.36623 * 119.73497 * 90.00311 * 17 16 15 27 27 C 1.38303 * 120.13466 * 0.25075 * 13 12 11 28 28 C 1.38102 * 120.07016 * 359.44733 * 27 13 12 29 29 H 0.96995 * 119.99851 * 359.97438 * 1 2 3 30 30 H 1.08000 * 120.02763 * 359.97438 * 11 10 9 31 31 H 1.07998 * 119.96282 * 179.97438 * 12 11 10 32 32 H 1.08994 * 109.47067 * 329.99940 * 14 13 12 33 33 H 1.08997 * 109.47043 * 209.99644 * 14 13 12 34 34 H 1.00906 * 110.99997 * 56.05082 * 15 14 13 35 35 H 1.09000 * 109.47310 * 300.00216 * 16 15 14 36 36 H 1.09005 * 109.46913 * 60.00429 * 16 15 14 37 37 H 1.08005 * 119.66726 * 0.02562 * 18 17 16 38 38 H 1.07993 * 120.11104 * 180.23763 * 19 18 17 39 39 H 1.08005 * 125.03001 * 180.02562 * 23 21 20 40 40 H 1.07994 * 126.50306 * 180.02562 * 24 23 21 41 41 H 1.08001 * 120.12076 * 359.97438 * 26 17 16 42 42 H 1.08001 * 119.96427 * 179.70622 * 27 13 12 43 43 H 1.07999 * 120.03168 * 180.27326 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 2.4970 2.0465 -1.4001 5 1 1.4470 2.6527 0.7001 6 1 3.5471 1.4402 0.6999 7 6 2.0088 -1.2008 -0.0005 8 1 1.4688 -2.1361 -0.0005 9 8 3.3571 -1.2008 -0.0011 10 6 3.9734 -2.4055 -0.1081 11 6 3.2235 -3.5744 -0.0951 12 6 3.8534 -4.7985 -0.2037 13 6 5.2296 -4.8614 -0.3248 14 6 5.9139 -6.1989 -0.4426 15 7 6.0176 -6.5728 -1.8594 16 6 6.6815 -7.8741 -2.0131 17 6 6.7701 -8.2231 -3.4765 18 6 5.7443 -8.9408 -4.0766 19 6 5.8030 -9.2659 -5.4139 20 6 6.9054 -8.8815 -6.1705 21 7 7.2547 -9.0523 -7.4913 22 1 6.7201 -9.5177 -8.1534 23 6 8.4685 -8.4677 -7.7308 24 6 8.9384 -7.9104 -6.6037 25 6 7.9447 -8.1590 -5.5565 26 6 7.8618 -7.8356 -4.2007 27 6 5.9797 -3.6994 -0.3324 28 6 5.3552 -2.4719 -0.2304 29 1 -0.4850 0.8400 0.0004 30 1 2.1488 -3.5260 0.0007 31 1 3.2708 -5.7078 -0.1932 32 1 5.3336 -6.9520 0.0904 33 1 6.9121 -6.1357 -0.0095 34 1 6.4959 -5.8586 -2.3878 35 1 7.6851 -7.8221 -1.5910 36 1 6.1068 -8.6391 -1.4910 37 1 4.8895 -9.2436 -3.4899 38 1 4.9982 -9.8211 -5.8724 39 1 8.9733 -8.4557 -8.6856 40 1 9.8720 -7.3795 -6.4903 41 1 8.6579 -7.2810 -3.7263 42 1 7.0547 -3.7519 -0.4223 43 1 5.9412 -1.5648 -0.2408 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001200292746.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:57:35 Heat of formation + Delta-G solvation = 38.815678 kcal Electronic energy + Delta-G solvation = -24529.299666 eV Core-core repulsion = 20925.490077 eV Total energy + Delta-G solvation = -3603.809589 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.03897 -40.88289 -39.00237 -38.29622 -36.10499 -34.44446 -32.87800 -32.11372 -31.77148 -30.12862 -29.58549 -27.61606 -26.25901 -24.47784 -23.66707 -23.39416 -22.03293 -21.84533 -21.21346 -19.79104 -19.08022 -18.91710 -17.34623 -16.74292 -16.70772 -16.12208 -15.85916 -15.76500 -15.68235 -15.51719 -15.18422 -15.03965 -14.90388 -14.57185 -14.29735 -14.20327 -14.07310 -13.89433 -13.45955 -13.37305 -13.06607 -12.76087 -12.62969 -12.37587 -12.32979 -12.18602 -12.03992 -11.83831 -11.69040 -11.25674 -10.89654 -10.63980 -9.77353 -9.34403 -9.01679 -8.93451 -8.57895 -8.49408 -6.21910 0.26361 0.58828 0.60714 0.74014 1.31235 1.35795 1.52159 1.88170 2.28533 2.33545 2.73883 2.92243 3.07392 3.18312 3.67016 3.84226 3.96710 4.06471 4.10192 4.11362 4.20809 4.32419 4.40729 4.52223 4.57197 4.60701 4.62517 4.73811 4.78935 4.88483 4.91327 4.97438 5.01543 5.13322 5.23783 5.28650 5.40711 5.51109 5.58935 5.77994 5.79984 5.84797 5.85558 5.87670 5.92914 6.14509 6.27736 6.30645 6.51341 6.76519 6.84914 7.59843 8.62365 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.017384 B = 0.002101 C = 0.002032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1610.320953 B =13323.816872 C =13774.776249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.008 3.992 3 Si 0.972 3.028 4 H -0.266 1.266 5 H -0.267 1.267 6 H -0.263 1.263 7 C -0.399 4.399 8 H 0.079 0.921 9 O -0.246 6.246 10 C 0.118 3.882 11 C -0.240 4.240 12 C -0.055 4.055 13 C -0.148 4.148 14 C 0.120 3.880 15 N -0.691 5.691 16 C 0.108 3.892 17 C -0.112 4.112 18 C -0.091 4.091 19 C -0.139 4.139 20 C 0.073 3.927 21 N -0.592 5.592 22 H 0.428 0.572 23 C 0.060 3.940 24 C -0.235 4.235 25 C -0.136 4.136 26 C -0.079 4.079 27 C -0.062 4.062 28 C -0.193 4.193 29 H 0.284 0.716 30 H 0.105 0.895 31 H 0.130 0.870 32 H 0.082 0.918 33 H 0.053 0.947 34 H 0.341 0.659 35 H 0.047 0.953 36 H 0.085 0.915 37 H 0.134 0.866 38 H 0.136 0.864 39 H 0.208 0.792 40 H 0.156 0.844 41 H 0.127 0.873 42 H 0.153 0.847 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.911 -20.926 -12.665 31.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.190 4.190 3 Si 0.794 3.206 4 H -0.191 1.191 5 H -0.191 1.191 6 H -0.187 1.187 7 C -0.475 4.475 8 H 0.097 0.903 9 O -0.154 6.154 10 C 0.069 3.931 11 C -0.259 4.259 12 C -0.074 4.074 13 C -0.149 4.149 14 C -0.008 4.008 15 N -0.323 5.323 16 C -0.020 4.020 17 C -0.114 4.114 18 C -0.110 4.110 19 C -0.159 4.159 20 C -0.035 4.035 21 N -0.196 5.196 22 H 0.267 0.733 23 C -0.066 4.066 24 C -0.260 4.260 25 C -0.141 4.141 26 C -0.098 4.098 27 C -0.080 4.080 28 C -0.212 4.212 29 H 0.094 0.906 30 H 0.123 0.877 31 H 0.148 0.852 32 H 0.101 0.899 33 H 0.071 0.929 34 H 0.159 0.841 35 H 0.065 0.935 36 H 0.103 0.897 37 H 0.152 0.848 38 H 0.154 0.846 39 H 0.224 0.776 40 H 0.174 0.826 41 H 0.145 0.855 42 H 0.171 0.829 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 19.128 -20.933 -12.765 31.097 hybrid contribution -0.055 0.842 -0.063 0.847 sum 19.073 -20.091 -12.828 30.528 Atomic orbital electron populations 1.69735 1.06910 1.29575 1.50298 1.25307 0.95921 1.02220 0.95583 0.85194 0.78782 0.77322 0.79258 1.19117 1.19117 1.18683 1.20705 0.78178 0.96082 1.52546 0.90301 1.83507 1.21166 1.27519 1.83178 1.19701 0.93308 0.85021 0.95035 1.21285 1.00082 0.93353 1.11163 1.20896 0.94829 0.95857 0.95784 1.19690 0.92977 0.95500 1.06774 1.20659 0.98735 0.92346 0.89066 1.60545 1.57325 1.04481 1.09925 1.20813 0.97678 0.91753 0.91766 1.19371 0.94987 1.00821 0.96191 1.20909 0.98349 0.97796 0.93962 1.20267 0.97070 1.04598 0.93974 1.18521 0.97250 1.02095 0.85643 1.41892 1.19389 1.50145 1.08217 0.73323 1.22431 0.86350 0.96925 1.00890 1.22007 1.01777 1.10166 0.92028 1.19594 0.96580 1.03270 0.94683 1.20318 0.98173 0.99239 0.92049 1.20971 1.00293 0.90117 0.96614 1.20507 0.90468 0.99834 1.10370 0.90591 0.87707 0.85172 0.89918 0.92870 0.84073 0.93453 0.89707 0.84842 0.84638 0.77577 0.82616 0.85547 0.82919 0.85402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.27 13.96 21.61 0.30 -55.96 16 2 C 0.01 0.46 5.49 84.83 0.47 0.93 16 3 Si 0.97 46.30 28.62 68.60 1.96 48.27 16 4 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 5 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 6 H -0.26 -12.45 7.11 99.48 0.71 -11.75 16 7 C -0.40 -24.10 9.95 67.92 0.68 -23.43 16 8 H 0.08 5.01 5.44 -2.91 -0.02 5.00 16 9 O -0.25 -13.71 8.59 -22.66 -0.19 -13.90 16 10 C 0.12 5.68 6.65 22.58 0.15 5.83 16 11 C -0.24 -10.91 9.17 22.39 0.21 -10.70 16 12 C -0.06 -1.98 9.69 22.25 0.22 -1.76 16 13 C -0.15 -4.44 5.40 -19.84 -0.11 -4.55 16 14 C 0.12 2.62 5.81 85.56 0.50 3.11 16 15 N -0.69 -15.16 6.48 -522.00 -3.38 -18.54 16 16 C 0.11 1.94 5.79 85.56 0.50 2.43 16 17 C -0.11 -2.27 5.36 -20.10 -0.11 -2.38 16 18 C -0.09 -1.82 9.66 22.30 0.22 -1.60 16 19 C -0.14 -2.63 10.08 22.37 0.23 -2.40 16 20 C 0.07 1.43 7.28 39.03 0.28 1.71 16 21 N -0.59 -7.85 6.07 -187.60 -1.14 -8.99 16 22 H 0.43 2.98 8.96 -92.71 -0.83 2.14 16 23 C 0.06 0.71 11.81 83.00 0.98 1.69 16 24 C -0.24 -3.91 11.08 23.51 0.26 -3.65 16 25 C -0.14 -2.91 6.37 -20.20 -0.13 -3.04 16 26 C -0.08 -1.63 9.67 22.23 0.22 -1.41 16 27 C -0.06 -1.87 9.69 22.25 0.22 -1.65 16 28 C -0.19 -7.44 9.99 22.39 0.22 -7.21 16 29 H 0.28 15.85 8.31 -92.71 -0.77 15.08 16 30 H 0.11 5.28 5.64 -2.91 -0.02 5.26 16 31 H 0.13 4.10 8.06 -2.91 -0.02 4.07 16 32 H 0.08 1.70 8.08 -2.39 -0.02 1.68 16 33 H 0.05 0.96 8.08 -2.39 -0.02 0.94 16 34 H 0.34 7.72 8.71 -89.69 -0.78 6.94 16 35 H 0.05 0.73 8.07 -2.39 -0.02 0.71 16 36 H 0.08 1.41 8.08 -2.38 -0.02 1.39 16 37 H 0.13 2.36 8.06 -2.91 -0.02 2.34 16 38 H 0.14 1.94 8.06 -2.91 -0.02 1.92 16 39 H 0.21 0.63 8.06 -2.91 -0.02 0.61 16 40 H 0.16 2.04 8.06 -2.91 -0.02 2.02 16 41 H 0.13 2.24 8.06 -2.91 -0.02 2.21 16 42 H 0.15 3.38 8.06 -2.91 -0.02 3.35 16 43 H 0.13 4.55 8.06 -2.91 -0.02 4.53 16 Total: -1.00 -73.34 367.82 1.97 -71.37 By element: Atomic # 1 Polarization: 26.40 SS G_CDS: -0.56 Total: 25.84 kcal Atomic # 6 Polarization: -53.07 SS G_CDS: 4.98 Total: -48.09 kcal Atomic # 7 Polarization: -79.27 SS G_CDS: -4.22 Total: -83.49 kcal Atomic # 8 Polarization: -13.71 SS G_CDS: -0.19 Total: -13.90 kcal Atomic # 14 Polarization: 46.30 SS G_CDS: 1.96 Total: 48.27 kcal Total: -73.34 1.97 -71.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200292746.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.186 kcal (2) G-P(sol) polarization free energy of solvation -73.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.370 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds