Wall clock time and date at job start Tue Mar 31 2020 13:47:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86801 * 120.00178 * 2 1 4 4 H 1.48502 * 109.47103 * 239.99946 * 3 2 1 5 5 H 1.48496 * 109.46950 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47159 * 119.99987 * 3 2 1 7 7 C 1.39942 * 120.00142 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99921 * 195.37522 * 7 2 1 9 9 C 1.41406 * 119.99559 * 15.37329 * 7 2 1 10 10 C 1.40779 * 120.20628 * 204.63508 * 9 7 2 11 11 C 1.37646 * 119.88173 * 179.97438 * 10 9 7 12 12 C 1.38528 * 120.32167 * 359.97438 * 11 10 9 13 13 C 1.39248 * 120.42914 * 359.76766 * 12 11 10 14 14 N 1.39961 * 119.94764 * 180.27583 * 13 12 11 15 15 C 1.34776 * 119.99391 * 35.84290 * 14 13 12 16 16 O 1.21578 * 120.00406 * 355.48049 * 15 14 13 17 17 N 1.34783 * 119.99371 * 175.47769 * 15 14 13 18 18 C 1.46501 * 119.99822 * 179.97438 * 17 15 14 19 19 H 1.09004 * 115.54977 * 9.28302 * 18 17 15 20 20 C 1.52996 * 117.50023 * 223.61239 * 18 17 15 21 21 C 1.52998 * 117.49899 * 154.98706 * 18 17 15 22 22 H 1.09007 * 117.49547 * 0.02562 * 21 18 17 23 23 C 1.50693 * 117.50287 * 214.98066 * 21 18 17 24 24 C 1.38238 * 120.00152 * 299.73182 * 23 21 18 25 25 C 1.38232 * 120.00258 * 179.78872 * 24 23 21 26 26 C 1.38233 * 119.99873 * 0.43428 * 25 24 23 27 27 C 1.38241 * 119.99942 * 359.81810 * 26 25 24 28 28 C 1.38231 * 120.00232 * 119.99786 * 23 21 18 29 29 C 1.38275 * 120.10242 * 0.51510 * 13 12 11 30 30 H 0.97000 * 120.00009 * 359.97438 * 1 2 3 31 31 H 1.07998 * 120.06018 * 359.96740 * 10 9 7 32 32 H 1.08003 * 119.83575 * 180.02562 * 11 10 9 33 33 H 1.07998 * 119.78411 * 180.02562 * 12 11 10 34 34 H 0.96997 * 119.99904 * 215.83844 * 14 13 12 35 35 H 0.97000 * 119.99778 * 0.02562 * 17 15 14 36 36 H 1.08998 * 117.49732 * 0.02562 * 20 18 17 37 37 H 1.09005 * 117.49950 * 144.99639 * 20 18 17 38 38 H 1.08002 * 119.99717 * 359.97438 * 24 23 21 39 39 H 1.07996 * 120.00469 * 180.27314 * 25 24 23 40 40 H 1.07997 * 120.00336 * 179.84077 * 26 25 24 41 41 H 1.07999 * 119.99843 * 179.97438 * 27 26 25 42 42 H 1.08002 * 119.99902 * 359.97438 * 28 23 21 43 43 H 1.08009 * 120.15550 * 179.74698 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0961 1.6963 -1.2125 5 1 1.2773 2.7464 -0.0006 6 1 3.0960 1.6964 1.2125 7 6 2.0080 -1.2119 -0.0005 8 1 3.0590 -1.2287 0.2474 9 6 1.3388 -2.4144 -0.3257 10 6 1.8278 -3.6472 0.1466 11 6 1.1709 -4.8136 -0.1735 12 6 0.0299 -4.7808 -0.9584 13 6 -0.4683 -3.5684 -1.4283 14 7 -1.6252 -3.5465 -2.2157 15 6 -2.6243 -4.4170 -1.9697 16 8 -2.4878 -5.2744 -1.1186 17 7 -3.7747 -4.3370 -2.6673 18 6 -4.8606 -5.2835 -2.4004 19 1 -4.7270 -5.9171 -1.5235 20 6 -5.5824 -5.8889 -3.6059 21 6 -6.2845 -4.8397 -2.7414 22 1 -6.4133 -3.8435 -3.1648 23 6 -7.3954 -5.3117 -1.8393 24 6 -7.6316 -6.6648 -1.6835 25 6 -8.6479 -7.0979 -0.8525 26 6 -9.4338 -6.1777 -0.1843 27 6 -9.2009 -4.8245 -0.3442 28 6 -8.1819 -4.3915 -1.1717 29 6 0.1809 -2.3865 -1.1222 30 1 -0.4850 0.8400 0.0004 31 1 2.7169 -3.6776 0.7591 32 1 1.5465 -5.7589 0.1896 33 1 -0.4789 -5.7013 -1.2040 34 1 -1.7079 -2.9048 -2.9384 35 1 -3.8834 -3.6531 -3.3466 36 1 -5.2491 -5.5832 -4.5976 37 1 -5.9237 -6.9207 -3.5222 38 1 -7.0202 -7.3837 -2.2087 39 1 -8.8296 -8.1551 -0.7274 40 1 -10.2294 -6.5159 0.4629 41 1 -9.8152 -4.1055 0.1776 42 1 -7.9998 -3.3343 -1.2964 43 1 -0.2025 -1.4460 -1.4896 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001201936057.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:47:20 Heat of formation + Delta-G solvation = 45.026078 kcal Electronic energy + Delta-G solvation = -25032.191936 eV Core-core repulsion = 21428.651650 eV Total energy + Delta-G solvation = -3603.540286 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.22837 -39.50893 -37.68970 -36.77814 -34.18548 -33.45078 -32.81678 -31.13062 -30.35682 -29.46349 -28.08930 -25.19889 -24.07228 -23.02743 -22.44031 -21.21501 -20.95876 -20.58051 -19.92501 -18.22124 -17.43368 -17.11164 -16.44347 -15.60479 -15.19779 -15.01734 -14.96344 -14.65788 -14.45907 -14.25716 -13.95889 -13.54477 -13.13204 -13.03044 -12.84028 -12.73578 -12.35846 -12.10864 -11.72268 -11.58270 -11.41199 -11.20668 -11.14399 -11.04276 -10.76670 -10.66857 -10.44778 -10.04957 -9.86192 -9.50477 -9.26438 -9.10252 -9.07256 -8.87909 -8.44300 -7.32765 -6.91506 -6.67754 -4.34237 1.12219 1.22327 2.72263 2.88060 2.96378 3.06940 3.10284 3.26241 3.39653 3.67100 3.94915 4.00530 4.41554 4.56222 4.62038 4.66661 4.68352 4.79341 4.83047 4.92815 5.03338 5.28007 5.40735 5.52460 5.70359 5.74122 5.80664 5.86140 5.87029 6.28765 6.30836 6.33365 6.43506 6.56624 6.73585 6.76704 6.81327 6.84170 7.02515 7.09995 7.26312 7.40679 7.67399 7.87493 8.02793 8.08062 8.30461 8.46444 8.63997 8.92522 8.94951 9.07030 10.23181 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.016702 B = 0.002436 C = 0.002280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1676.061564 B =11489.554193 C =12279.261142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.799 5.799 2 C 0.075 3.925 3 Si 0.908 3.092 4 H -0.265 1.265 5 H -0.280 1.280 6 H -0.266 1.266 7 C -0.463 4.463 8 H 0.077 0.923 9 C 0.118 3.882 10 C -0.227 4.227 11 C -0.089 4.089 12 C -0.225 4.225 13 C 0.159 3.841 14 N -0.676 5.676 15 C 0.704 3.296 16 O -0.570 6.570 17 N -0.722 5.722 18 C 0.128 3.872 19 H 0.140 0.860 20 C -0.189 4.189 21 C -0.131 4.131 22 H 0.115 0.885 23 C -0.046 4.046 24 C -0.120 4.120 25 C -0.117 4.117 26 C -0.127 4.127 27 C -0.118 4.118 28 C -0.112 4.112 29 C -0.184 4.184 30 H 0.278 0.722 31 H 0.093 0.907 32 H 0.091 0.909 33 H 0.107 0.893 34 H 0.396 0.604 35 H 0.395 0.605 36 H 0.101 0.899 37 H 0.105 0.895 38 H 0.124 0.876 39 H 0.121 0.879 40 H 0.120 0.880 41 H 0.121 0.879 42 H 0.122 0.878 43 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.845 -6.479 -7.396 19.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.425 5.425 2 C -0.142 4.142 3 Si 0.733 3.267 4 H -0.189 1.189 5 H -0.205 1.205 6 H -0.191 1.191 7 C -0.493 4.493 8 H 0.095 0.905 9 C 0.115 3.885 10 C -0.247 4.247 11 C -0.108 4.108 12 C -0.246 4.246 13 C 0.067 3.933 14 N -0.321 5.321 15 C 0.405 3.595 16 O -0.446 6.446 17 N -0.376 5.376 18 C 0.020 3.980 19 H 0.158 0.842 20 C -0.228 4.228 21 C -0.151 4.151 22 H 0.133 0.867 23 C -0.046 4.046 24 C -0.138 4.138 25 C -0.135 4.135 26 C -0.145 4.145 27 C -0.136 4.136 28 C -0.130 4.130 29 C -0.206 4.206 30 H 0.089 0.911 31 H 0.111 0.889 32 H 0.109 0.891 33 H 0.125 0.875 34 H 0.230 0.770 35 H 0.229 0.771 36 H 0.119 0.881 37 H 0.124 0.876 38 H 0.142 0.858 39 H 0.139 0.861 40 H 0.138 0.862 41 H 0.139 0.861 42 H 0.140 0.860 43 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -16.908 -7.089 -6.576 19.478 hybrid contribution 0.056 1.568 -0.606 1.682 sum -16.852 -5.521 -7.182 19.132 Atomic orbital electron populations 1.69819 1.07446 1.28924 1.36340 1.25887 0.94745 1.01173 0.92374 0.86374 0.80076 0.80343 0.79919 1.18924 1.20482 1.19057 1.19495 0.97207 0.90812 1.41820 0.90460 1.17346 0.90726 0.92158 0.88225 1.21038 1.03343 0.92978 1.07386 1.20442 0.95448 0.96601 0.98283 1.20473 0.99555 0.95845 1.08704 1.17430 0.85674 0.94606 0.95606 1.42523 1.16551 1.37185 1.35872 1.15877 0.79730 0.82428 0.81441 1.90915 1.80889 1.37293 1.35530 1.44506 1.14290 1.36191 1.42597 1.21486 0.82773 0.94330 0.99403 0.84216 1.23677 1.03629 0.98719 0.96726 1.21606 0.92234 0.99814 1.01419 0.86695 1.19076 0.95333 0.93295 0.96943 1.21089 0.98310 0.95235 0.99179 1.21125 0.95772 0.99607 0.97009 1.21152 0.99941 0.93369 1.00057 1.21141 0.97941 0.95904 0.98609 1.20994 0.95492 0.99517 0.97009 1.21109 1.00785 0.94884 1.03821 0.91073 0.88924 0.89078 0.87468 0.77014 0.77109 0.88050 0.87641 0.85774 0.86064 0.86221 0.86057 0.86007 0.85735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.58 10.82 55.55 0.60 -19.98 16 2 C 0.07 1.87 5.19 -17.34 -0.09 1.78 16 3 Si 0.91 18.59 29.59 -169.99 -5.03 13.56 16 4 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 5 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 6 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 7 C -0.46 -12.28 9.07 -37.74 -0.34 -12.62 16 8 H 0.08 1.96 7.89 -52.49 -0.41 1.55 16 9 C 0.12 3.18 5.58 -106.85 -0.60 2.59 16 10 C -0.23 -5.74 9.79 -38.84 -0.38 -6.12 16 11 C -0.09 -2.13 10.02 -39.69 -0.40 -2.52 16 12 C -0.22 -5.48 8.70 -39.10 -0.34 -5.82 16 13 C 0.16 3.78 6.27 -83.76 -0.53 3.26 16 14 N -0.68 -12.94 5.34 -14.27 -0.08 -13.02 16 15 C 0.70 13.23 8.40 -86.91 -0.73 12.50 16 16 O -0.57 -13.04 13.38 5.30 0.07 -12.97 16 17 N -0.72 -9.71 5.57 -58.68 -0.33 -10.04 16 18 C 0.13 1.56 6.07 -67.93 -0.41 1.15 16 19 H 0.14 2.05 7.40 -51.93 -0.38 1.67 16 20 C -0.19 -1.70 9.78 -26.73 -0.26 -1.96 16 21 C -0.13 -1.28 5.97 -91.78 -0.55 -1.83 16 22 H 0.12 1.00 8.14 -51.93 -0.42 0.58 16 23 C -0.05 -0.48 5.61 -104.63 -0.59 -1.07 16 24 C -0.12 -1.18 9.30 -39.58 -0.37 -1.55 16 25 C -0.12 -1.07 10.05 -39.59 -0.40 -1.47 16 26 C -0.13 -1.14 10.05 -39.58 -0.40 -1.53 16 27 C -0.12 -1.10 10.05 -39.58 -0.40 -1.50 16 28 C -0.11 -1.14 9.74 -39.59 -0.39 -1.53 16 29 C -0.18 -4.73 8.60 -38.69 -0.33 -5.06 16 30 H 0.28 6.56 8.30 -40.82 -0.34 6.22 16 31 H 0.09 2.18 8.06 -52.49 -0.42 1.76 16 32 H 0.09 1.92 8.06 -52.48 -0.42 1.50 16 33 H 0.11 2.62 6.26 -52.49 -0.33 2.29 16 34 H 0.40 6.15 8.84 -40.82 -0.36 5.79 16 35 H 0.40 4.03 8.85 -40.82 -0.36 3.67 16 36 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 37 H 0.11 0.85 6.17 -51.93 -0.32 0.53 16 38 H 0.12 1.05 6.02 -52.49 -0.32 0.73 16 39 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 40 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 41 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 42 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 43 H 0.12 3.23 6.07 -52.48 -0.32 2.91 16 LS Contribution 364.66 15.07 5.50 5.50 Total: -1.00 -31.79 364.66 -12.08 -43.87 By element: Atomic # 1 Polarization: 21.72 SS G_CDS: -5.32 Total: 16.40 kcal Atomic # 6 Polarization: -15.83 SS G_CDS: -7.49 Total: -23.32 kcal Atomic # 7 Polarization: -43.23 SS G_CDS: 0.20 Total: -43.04 kcal Atomic # 8 Polarization: -13.04 SS G_CDS: 0.07 Total: -12.97 kcal Atomic # 14 Polarization: 18.59 SS G_CDS: -5.03 Total: 13.56 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -31.79 -12.08 -43.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201936057.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.895 kcal (2) G-P(sol) polarization free energy of solvation -31.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.869 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds