Wall clock time and date at job start Tue Mar 31 2020 13:47:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86801 * 120.00178 * 2 1 4 4 H 1.48502 * 109.47103 * 239.99946 * 3 2 1 5 5 H 1.48496 * 109.46950 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47159 * 119.99987 * 3 2 1 7 7 C 1.39942 * 120.00142 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99921 * 195.37522 * 7 2 1 9 9 C 1.41406 * 119.99559 * 15.37329 * 7 2 1 10 10 C 1.40779 * 120.20628 * 204.63508 * 9 7 2 11 11 C 1.37646 * 119.88173 * 179.97438 * 10 9 7 12 12 C 1.38528 * 120.32167 * 359.97438 * 11 10 9 13 13 C 1.39248 * 120.42914 * 359.76766 * 12 11 10 14 14 N 1.39961 * 119.94764 * 180.27583 * 13 12 11 15 15 C 1.34776 * 119.99391 * 35.84290 * 14 13 12 16 16 O 1.21578 * 120.00406 * 355.48049 * 15 14 13 17 17 N 1.34783 * 119.99371 * 175.47769 * 15 14 13 18 18 C 1.46501 * 119.99822 * 179.97438 * 17 15 14 19 19 H 1.09004 * 115.54977 * 9.28302 * 18 17 15 20 20 C 1.52996 * 117.50023 * 223.61239 * 18 17 15 21 21 C 1.52998 * 117.49899 * 154.98706 * 18 17 15 22 22 H 1.09007 * 117.49547 * 0.02562 * 21 18 17 23 23 C 1.50693 * 117.50287 * 214.98066 * 21 18 17 24 24 C 1.38238 * 120.00152 * 299.73182 * 23 21 18 25 25 C 1.38232 * 120.00258 * 179.78872 * 24 23 21 26 26 C 1.38233 * 119.99873 * 0.43428 * 25 24 23 27 27 C 1.38241 * 119.99942 * 359.81810 * 26 25 24 28 28 C 1.38231 * 120.00232 * 119.99786 * 23 21 18 29 29 C 1.38275 * 120.10242 * 0.51510 * 13 12 11 30 30 H 0.97000 * 120.00009 * 359.97438 * 1 2 3 31 31 H 1.07998 * 120.06018 * 359.96740 * 10 9 7 32 32 H 1.08003 * 119.83575 * 180.02562 * 11 10 9 33 33 H 1.07998 * 119.78411 * 180.02562 * 12 11 10 34 34 H 0.96997 * 119.99904 * 215.83844 * 14 13 12 35 35 H 0.97000 * 119.99778 * 0.02562 * 17 15 14 36 36 H 1.08998 * 117.49732 * 0.02562 * 20 18 17 37 37 H 1.09005 * 117.49950 * 144.99639 * 20 18 17 38 38 H 1.08002 * 119.99717 * 359.97438 * 24 23 21 39 39 H 1.07996 * 120.00469 * 180.27314 * 25 24 23 40 40 H 1.07997 * 120.00336 * 179.84077 * 26 25 24 41 41 H 1.07999 * 119.99843 * 179.97438 * 27 26 25 42 42 H 1.08002 * 119.99902 * 359.97438 * 28 23 21 43 43 H 1.08009 * 120.15550 * 179.74698 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0961 1.6963 -1.2125 5 1 1.2773 2.7464 -0.0006 6 1 3.0960 1.6964 1.2125 7 6 2.0080 -1.2119 -0.0005 8 1 3.0590 -1.2287 0.2474 9 6 1.3388 -2.4144 -0.3257 10 6 1.8278 -3.6472 0.1466 11 6 1.1709 -4.8136 -0.1735 12 6 0.0299 -4.7808 -0.9584 13 6 -0.4683 -3.5684 -1.4283 14 7 -1.6252 -3.5465 -2.2157 15 6 -2.6243 -4.4170 -1.9697 16 8 -2.4878 -5.2744 -1.1186 17 7 -3.7747 -4.3370 -2.6673 18 6 -4.8606 -5.2835 -2.4004 19 1 -4.7270 -5.9171 -1.5235 20 6 -5.5824 -5.8889 -3.6059 21 6 -6.2845 -4.8397 -2.7414 22 1 -6.4133 -3.8435 -3.1648 23 6 -7.3954 -5.3117 -1.8393 24 6 -7.6316 -6.6648 -1.6835 25 6 -8.6479 -7.0979 -0.8525 26 6 -9.4338 -6.1777 -0.1843 27 6 -9.2009 -4.8245 -0.3442 28 6 -8.1819 -4.3915 -1.1717 29 6 0.1809 -2.3865 -1.1222 30 1 -0.4850 0.8400 0.0004 31 1 2.7169 -3.6776 0.7591 32 1 1.5465 -5.7589 0.1896 33 1 -0.4789 -5.7013 -1.2040 34 1 -1.7079 -2.9048 -2.9384 35 1 -3.8834 -3.6531 -3.3466 36 1 -5.2491 -5.5832 -4.5976 37 1 -5.9237 -6.9207 -3.5222 38 1 -7.0202 -7.3837 -2.2087 39 1 -8.8296 -8.1551 -0.7274 40 1 -10.2294 -6.5159 0.4629 41 1 -9.8152 -4.1055 0.1776 42 1 -7.9998 -3.3343 -1.2964 43 1 -0.2025 -1.4460 -1.4896 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001201936057.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:47:19 Heat of formation + Delta-G solvation = 27.874945 kcal Electronic energy + Delta-G solvation = -25032.935665 eV Core-core repulsion = 21428.651650 eV Total energy + Delta-G solvation = -3604.284015 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.53719 -40.49492 -39.21124 -37.98808 -35.94650 -35.17035 -34.12319 -31.83379 -31.44415 -31.16965 -29.82010 -27.14788 -24.82102 -24.20846 -23.27908 -23.03155 -22.31203 -21.70062 -21.25261 -19.65775 -19.20916 -17.92848 -17.82531 -17.10355 -16.62121 -16.40127 -16.21612 -15.97608 -15.76639 -15.47391 -15.02116 -14.86979 -14.53986 -14.24647 -14.19413 -13.81813 -13.70113 -13.54510 -13.05271 -12.82967 -12.75487 -12.61199 -12.46130 -12.21139 -12.16438 -11.90240 -11.85193 -11.71596 -11.45607 -11.26506 -11.05932 -10.69318 -10.06945 -9.81770 -9.34372 -9.29809 -8.74984 -8.55094 -6.34175 0.38260 0.50650 0.91115 1.07540 1.41132 1.51481 1.54931 1.61158 2.09221 2.23626 2.71038 2.78781 3.10449 3.25410 3.68798 3.75089 3.75962 3.91994 4.02489 4.15604 4.25999 4.30382 4.46014 4.60028 4.69268 4.72075 4.80284 4.86579 4.91956 5.04681 5.13763 5.16283 5.17442 5.18614 5.22706 5.37046 5.49176 5.59359 5.63440 5.70438 5.77910 5.82330 6.02981 6.11737 6.12324 6.18295 6.40204 6.70088 6.95859 6.98848 7.08634 7.55556 8.36685 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.016702 B = 0.002436 C = 0.002280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1676.061564 B =11489.554193 C =12279.261142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.035 3.965 3 Si 0.984 3.016 4 H -0.259 1.259 5 H -0.269 1.269 6 H -0.262 1.262 7 C -0.496 4.496 8 H 0.078 0.922 9 C 0.089 3.911 10 C -0.247 4.247 11 C -0.088 4.088 12 C -0.239 4.239 13 C 0.166 3.834 14 N -0.670 5.670 15 C 0.702 3.298 16 O -0.615 6.615 17 N -0.699 5.699 18 C 0.093 3.907 19 H 0.110 0.890 20 C -0.162 4.162 21 C -0.114 4.114 22 H 0.130 0.870 23 C -0.067 4.067 24 C -0.132 4.132 25 C -0.127 4.127 26 C -0.133 4.133 27 C -0.128 4.128 28 C -0.129 4.129 29 C -0.203 4.203 30 H 0.287 0.713 31 H 0.101 0.899 32 H 0.118 0.882 33 H 0.106 0.894 34 H 0.413 0.587 35 H 0.414 0.586 36 H 0.120 0.880 37 H 0.117 0.883 38 H 0.134 0.866 39 H 0.141 0.859 40 H 0.141 0.859 41 H 0.138 0.862 42 H 0.128 0.872 43 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.109 -5.929 -8.397 20.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.179 4.179 3 Si 0.805 3.195 4 H -0.183 1.183 5 H -0.193 1.193 6 H -0.187 1.187 7 C -0.526 4.526 8 H 0.096 0.904 9 C 0.087 3.913 10 C -0.267 4.267 11 C -0.106 4.106 12 C -0.260 4.260 13 C 0.072 3.928 14 N -0.318 5.318 15 C 0.402 3.598 16 O -0.494 6.494 17 N -0.353 5.353 18 C -0.013 4.013 19 H 0.128 0.872 20 C -0.201 4.201 21 C -0.134 4.134 22 H 0.147 0.853 23 C -0.067 4.067 24 C -0.150 4.150 25 C -0.144 4.144 26 C -0.151 4.151 27 C -0.146 4.146 28 C -0.147 4.147 29 C -0.225 4.225 30 H 0.097 0.903 31 H 0.120 0.880 32 H 0.136 0.864 33 H 0.124 0.876 34 H 0.250 0.750 35 H 0.251 0.749 36 H 0.138 0.862 37 H 0.135 0.865 38 H 0.152 0.848 39 H 0.158 0.842 40 H 0.159 0.841 41 H 0.156 0.844 42 H 0.146 0.854 43 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -18.233 -6.536 -7.634 20.820 hybrid contribution 0.306 1.301 -0.274 1.364 sum -17.927 -5.236 -7.908 20.281 Atomic orbital electron populations 1.69874 1.08887 1.30377 1.36130 1.26752 0.95540 1.04419 0.91210 0.85225 0.78697 0.75566 0.80024 1.18276 1.19290 1.18692 1.19772 0.97522 0.91885 1.43380 0.90417 1.17773 0.91589 0.93137 0.88848 1.21211 1.04152 0.93085 1.08247 1.20749 0.94976 0.97435 0.97484 1.20634 0.99938 0.96046 1.09361 1.17454 0.86467 0.93830 0.95046 1.42341 1.15643 1.37879 1.35888 1.16035 0.80650 0.81654 0.81426 1.90879 1.81881 1.39044 1.37638 1.44240 1.12724 1.36578 1.41760 1.21501 0.83684 0.95468 1.00674 0.87192 1.23772 1.00821 0.99310 0.96152 1.21630 0.90050 1.00846 1.00846 0.85254 1.19270 0.95890 0.93820 0.97723 1.21325 0.98757 0.95327 0.99564 1.21451 0.95491 1.00835 0.96658 1.21494 1.00316 0.93281 1.00011 1.21440 0.97972 0.96693 0.98531 1.21227 0.95996 0.99998 0.97441 1.21061 1.01388 0.95175 1.04882 0.90253 0.88036 0.86377 0.87592 0.74998 0.74924 0.86156 0.86518 0.84808 0.84153 0.84126 0.84383 0.85381 0.86419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -42.83 10.82 21.83 0.24 -42.60 16 2 C 0.04 1.76 5.19 85.26 0.44 2.20 16 3 Si 0.98 37.74 29.59 68.60 2.03 39.77 16 4 H -0.26 -9.60 7.11 99.48 0.71 -8.90 16 5 H -0.27 -9.72 7.11 99.48 0.71 -9.01 16 6 H -0.26 -9.87 7.11 99.48 0.71 -9.16 16 7 C -0.50 -26.79 9.07 23.46 0.21 -26.58 16 8 H 0.08 4.03 7.89 -2.91 -0.02 4.01 16 9 C 0.09 4.94 5.58 -21.31 -0.12 4.82 16 10 C -0.25 -12.71 9.79 22.75 0.22 -12.49 16 11 C -0.09 -4.23 10.02 22.20 0.22 -4.01 16 12 C -0.24 -11.81 8.70 22.58 0.20 -11.61 16 13 C 0.17 8.03 6.27 38.09 0.24 8.27 16 14 N -0.67 -25.74 5.34 -317.33 -1.69 -27.43 16 15 C 0.70 26.43 8.40 179.05 1.50 27.94 16 16 O -0.61 -28.76 13.38 -3.96 -0.05 -28.82 16 17 N -0.70 -18.18 5.57 -457.82 -2.55 -20.73 16 18 C 0.09 2.22 6.07 44.99 0.27 2.49 16 19 H 0.11 3.33 7.40 -2.38 -0.02 3.32 16 20 C -0.16 -2.57 9.78 30.59 0.30 -2.27 16 21 C -0.11 -2.05 5.97 -11.54 -0.07 -2.12 16 22 H 0.13 1.94 8.14 -2.38 -0.02 1.92 16 23 C -0.07 -1.33 5.61 -19.87 -0.11 -1.45 16 24 C -0.13 -2.45 9.30 22.27 0.21 -2.25 16 25 C -0.13 -2.13 10.05 22.27 0.22 -1.91 16 26 C -0.13 -2.18 10.05 22.27 0.22 -1.95 16 27 C -0.13 -2.25 10.05 22.27 0.22 -2.02 16 28 C -0.13 -2.51 9.74 22.27 0.22 -2.30 16 29 C -0.20 -10.69 8.60 22.85 0.20 -10.49 16 30 H 0.29 13.44 8.30 -92.71 -0.77 12.67 16 31 H 0.10 4.88 8.06 -2.91 -0.02 4.85 16 32 H 0.12 4.91 8.06 -2.91 -0.02 4.89 16 33 H 0.11 5.26 6.26 -2.91 -0.02 5.24 16 34 H 0.41 12.64 8.84 -92.71 -0.82 11.82 16 35 H 0.41 7.67 8.85 -92.71 -0.82 6.85 16 36 H 0.12 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.12 1.61 6.17 -2.38 -0.01 1.59 16 38 H 0.13 2.09 6.02 -2.91 -0.02 2.07 16 39 H 0.14 1.71 8.06 -2.91 -0.02 1.69 16 40 H 0.14 1.61 8.06 -2.91 -0.02 1.59 16 41 H 0.14 1.82 8.06 -2.91 -0.02 1.80 16 42 H 0.13 2.20 8.06 -2.91 -0.02 2.18 16 43 H 0.12 6.25 6.07 -2.91 -0.02 6.24 16 Total: -1.00 -70.40 364.66 2.00 -68.40 By element: Atomic # 1 Polarization: 47.72 SS G_CDS: -0.58 Total: 47.14 kcal Atomic # 6 Polarization: -40.34 SS G_CDS: 4.61 Total: -35.73 kcal Atomic # 7 Polarization: -86.75 SS G_CDS: -4.01 Total: -90.76 kcal Atomic # 8 Polarization: -28.76 SS G_CDS: -0.05 Total: -28.82 kcal Atomic # 14 Polarization: 37.74 SS G_CDS: 2.03 Total: 39.77 kcal Total: -70.40 2.00 -68.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201936057.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.275 kcal (2) G-P(sol) polarization free energy of solvation -70.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.400 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds