Wall clock time and date at job start Tue Mar 31 2020 13:47:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30856 * 1 3 3 Si 1.86807 * 119.99836 * 2 1 4 4 H 1.48501 * 109.47068 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.46996 * 300.00365 * 3 2 1 6 6 H 1.48501 * 109.47081 * 60.00309 * 3 2 1 7 7 C 1.39946 * 120.00456 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00373 * 175.66424 * 7 2 1 9 9 C 1.41073 * 119.99886 * 355.65963 * 7 2 1 10 10 C 1.40738 * 120.29829 * 34.75773 * 9 7 2 11 11 C 1.36466 * 119.94016 * 179.97438 * 10 9 7 12 12 C 1.38868 * 120.58257 * 359.97438 * 11 10 9 13 13 C 1.38221 * 120.61011 * 359.74554 * 12 11 10 14 14 C 1.38643 * 120.03520 * 0.51162 * 13 12 11 15 15 N 1.39132 * 120.28611 * 179.77079 * 14 13 12 16 16 C 1.34780 * 119.99831 * 34.55576 * 15 14 13 17 17 O 1.21577 * 120.00150 * 355.81065 * 16 15 14 18 18 N 1.34775 * 119.99600 * 175.80956 * 16 15 14 19 19 C 1.46502 * 119.99752 * 180.02562 * 18 16 15 20 20 H 1.08999 * 115.56227 * 9.31401 * 19 18 16 21 21 C 1.53001 * 117.49997 * 223.62347 * 19 18 16 22 22 C 1.53002 * 117.49955 * 154.99813 * 19 18 16 23 23 H 1.08998 * 117.51966 * 0.02562 * 22 19 18 24 24 C 1.50697 * 117.49949 * 214.97634 * 22 19 18 25 25 C 1.38244 * 119.99754 * 119.99177 * 24 22 19 26 26 C 1.38230 * 120.00097 * 180.25665 * 25 24 22 27 27 C 1.38237 * 119.99935 * 359.53097 * 26 25 24 28 28 C 1.38232 * 120.00057 * 0.42131 * 27 26 25 29 29 C 1.38230 * 120.00430 * 299.96614 * 24 22 19 30 30 H 0.97002 * 120.00450 * 359.97438 * 1 2 3 31 31 H 1.07994 * 120.02774 * 359.96033 * 10 9 7 32 32 H 1.08000 * 119.70686 * 179.97438 * 11 10 9 33 33 H 1.07994 * 119.69516 * 180.02562 * 12 11 10 34 34 H 1.08003 * 119.98369 * 180.28360 * 13 12 11 35 35 H 0.96998 * 120.00237 * 214.56168 * 15 14 13 36 36 H 0.96994 * 120.00683 * 0.02562 * 18 16 15 37 37 H 1.08996 * 117.50282 * 145.02354 * 21 19 18 38 38 H 1.08993 * 117.49845 * 359.97438 * 21 19 18 39 39 H 1.08005 * 119.99930 * 359.97438 * 25 24 22 40 40 H 1.07994 * 120.00200 * 179.72016 * 26 25 24 41 41 H 1.07994 * 120.00130 * 180.21487 * 27 26 25 42 42 H 1.07996 * 120.00217 * 179.78670 * 28 27 26 43 43 H 1.07995 * 119.99914 * 0.02562 * 29 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2425 1.6178 0.0000 4 1 3.7026 1.3465 -0.0006 5 1 1.8837 2.3965 -1.2124 6 1 1.8838 2.3965 1.2125 7 6 2.0084 -1.2119 -0.0005 8 1 3.0860 -1.2132 -0.0712 9 6 1.3061 -2.4320 0.0914 10 6 0.0439 -2.5721 -0.5152 11 6 -0.6288 -3.7558 -0.4221 12 6 -0.0789 -4.8287 0.2671 13 6 1.1616 -4.7187 0.8667 14 6 1.8649 -3.5262 0.7927 15 7 3.1119 -3.4082 1.3984 16 6 3.9449 -4.4670 1.4375 17 8 3.5780 -5.5452 1.0121 18 7 5.1846 -4.3304 1.9482 19 6 6.0903 -5.4812 1.9903 20 1 5.7520 -6.3659 1.4510 21 6 6.8950 -5.7004 3.2730 22 6 7.5936 -5.1968 2.0083 23 1 7.9090 -4.1537 1.9894 24 6 8.4930 -6.1614 1.2793 25 6 9.2862 -5.7152 0.2387 26 6 10.1073 -6.6010 -0.4335 27 6 10.1426 -7.9312 -0.0589 28 6 9.3502 -8.3772 0.9823 29 6 8.5254 -7.4923 1.6514 30 1 -0.4851 0.8400 0.0004 31 1 -0.3920 -1.7436 -1.0535 32 1 -1.5973 -3.8591 -0.8886 33 1 -0.6236 -5.7590 0.3314 34 1 1.5817 -5.5610 1.3964 35 1 3.3817 -2.5640 1.7925 36 1 5.4773 -3.4704 2.2879 37 1 7.0860 -6.7294 3.5777 38 1 6.7508 -4.9883 4.0854 39 1 9.2609 -4.6753 -0.0520 40 1 10.7236 -6.2533 -1.2493 41 1 10.7867 -8.6225 -0.5818 42 1 9.3751 -9.4171 1.2727 43 1 7.9057 -7.8409 2.4643 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001201937997.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:47:23 Heat of formation + Delta-G solvation = 45.236480 kcal Electronic energy + Delta-G solvation = -25324.038828 eV Core-core repulsion = 21720.507666 eV Total energy + Delta-G solvation = -3603.531162 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.15805 -39.46283 -37.71127 -36.73212 -33.73622 -33.61199 -32.87572 -31.11005 -30.31847 -29.54179 -28.11157 -25.20196 -24.03525 -22.96736 -22.41973 -21.27474 -20.75295 -20.53314 -19.83391 -18.01954 -17.28803 -17.02084 -16.68211 -15.76006 -15.19914 -15.13431 -14.88491 -14.64831 -14.25739 -14.17271 -13.84224 -13.51919 -13.10098 -12.99804 -12.75983 -12.64968 -12.38052 -12.03516 -11.76526 -11.51699 -11.35279 -11.23025 -11.17497 -11.16305 -10.88712 -10.62552 -10.45011 -10.13798 -9.75194 -9.41521 -9.23417 -9.08401 -9.04100 -8.89783 -8.38383 -7.26591 -6.91099 -6.59034 -4.42181 1.14501 1.24088 2.70595 2.91708 3.04619 3.06237 3.07900 3.21283 3.44024 3.74462 3.91611 4.07729 4.48882 4.66156 4.66950 4.68640 4.78576 4.83178 4.89071 4.94963 5.07416 5.30234 5.43099 5.57730 5.64161 5.77375 5.85923 5.89795 5.90583 6.30894 6.34957 6.35458 6.46473 6.54805 6.58825 6.71354 6.83310 6.95071 7.09992 7.14254 7.32276 7.45260 7.71250 7.83331 8.09213 8.14153 8.22075 8.60557 8.62369 8.88768 8.92234 9.22450 10.25283 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.014453 B = 0.002814 C = 0.002536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1936.787115 B = 9948.660137 C =11036.419847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.809 5.809 2 C 0.073 3.927 3 Si 0.912 3.088 4 H -0.264 1.264 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.469 4.469 8 H 0.073 0.927 9 C 0.093 3.907 10 C -0.139 4.139 11 C -0.122 4.122 12 C -0.214 4.214 13 C -0.095 4.095 14 C 0.043 3.957 15 N -0.652 5.652 16 C 0.698 3.302 17 O -0.583 6.583 18 N -0.723 5.723 19 C 0.130 3.870 20 H 0.140 0.860 21 C -0.190 4.190 22 C -0.133 4.133 23 H 0.115 0.885 24 C -0.045 4.045 25 C -0.112 4.112 26 C -0.118 4.118 27 C -0.128 4.128 28 C -0.117 4.117 29 C -0.120 4.120 30 H 0.277 0.723 31 H 0.131 0.869 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.111 0.889 35 H 0.400 0.600 36 H 0.396 0.604 37 H 0.105 0.895 38 H 0.101 0.899 39 H 0.122 0.878 40 H 0.121 0.879 41 H 0.119 0.881 42 H 0.121 0.879 43 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.717 -7.236 4.497 18.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.436 5.436 2 C -0.143 4.143 3 Si 0.737 3.263 4 H -0.188 1.188 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.500 4.500 8 H 0.092 0.908 9 C 0.089 3.911 10 C -0.159 4.159 11 C -0.141 4.141 12 C -0.234 4.234 13 C -0.115 4.115 14 C -0.051 4.051 15 N -0.297 5.297 16 C 0.399 3.601 17 O -0.461 6.461 18 N -0.377 5.377 19 C 0.022 3.978 20 H 0.157 0.843 21 C -0.228 4.228 22 C -0.153 4.153 23 H 0.133 0.867 24 C -0.045 4.045 25 C -0.131 4.131 26 C -0.136 4.136 27 C -0.146 4.146 28 C -0.135 4.135 29 C -0.138 4.138 30 H 0.088 0.912 31 H 0.149 0.851 32 H 0.107 0.893 33 H 0.108 0.892 34 H 0.129 0.871 35 H 0.235 0.765 36 H 0.229 0.771 37 H 0.123 0.877 38 H 0.119 0.881 39 H 0.140 0.860 40 H 0.139 0.861 41 H 0.137 0.863 42 H 0.139 0.861 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 16.165 -8.028 4.090 18.506 hybrid contribution 0.697 1.709 0.371 1.882 sum 16.862 -6.319 4.461 18.551 Atomic orbital electron populations 1.69775 1.07228 1.28573 1.38041 1.25841 0.94888 1.00968 0.92569 0.86201 0.80434 0.81149 0.78476 1.18752 1.19998 1.20030 1.19293 0.94464 0.89992 1.46294 0.90841 1.17464 0.93279 0.91461 0.88880 1.21174 0.96408 0.96421 1.01859 1.20542 0.98591 0.94364 1.00624 1.20380 0.97232 0.98206 1.07589 1.20688 0.93795 0.96516 1.00540 1.17660 0.86190 0.97609 1.03679 1.41968 1.15757 1.12790 1.59193 1.15971 0.80041 0.85069 0.78974 1.90866 1.75657 1.26028 1.53526 1.44495 1.13232 1.12270 1.67668 1.21458 0.85008 0.91553 0.99781 0.84291 1.23675 1.03921 1.03087 0.92159 1.21615 0.93790 0.99145 1.00715 0.86703 1.19090 0.96194 0.93436 0.95791 1.20999 0.96460 1.00003 0.95589 1.21134 0.99125 0.93649 0.99712 1.21143 0.99782 0.95902 0.97772 1.21125 0.96618 0.99517 0.96268 1.21093 0.99480 0.92935 1.00327 0.91178 0.85143 0.89340 0.89183 0.87089 0.76514 0.77071 0.87717 0.88055 0.86008 0.86088 0.86253 0.86087 0.85769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -20.36 10.61 55.55 0.59 -19.77 16 2 C 0.07 1.76 5.42 -17.33 -0.09 1.66 16 3 Si 0.91 18.08 29.56 -169.99 -5.03 13.05 16 4 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 5 H -0.27 -5.45 7.11 56.52 0.40 -5.04 16 6 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 7 C -0.47 -11.78 8.23 -37.87 -0.31 -12.09 16 8 H 0.07 1.77 7.64 -52.49 -0.40 1.37 16 9 C 0.09 2.42 5.56 -106.65 -0.59 1.83 16 10 C -0.14 -3.59 8.62 -39.28 -0.34 -3.93 16 11 C -0.12 -2.93 9.97 -39.99 -0.40 -3.33 16 12 C -0.21 -5.05 10.04 -39.35 -0.40 -5.45 16 13 C -0.10 -2.32 8.69 -39.44 -0.34 -2.66 16 14 C 0.04 1.04 6.34 -83.17 -0.53 0.52 16 15 N -0.65 -13.36 4.96 -13.83 -0.07 -13.43 16 16 C 0.70 13.60 8.40 -86.92 -0.73 12.86 16 17 O -0.58 -13.43 13.32 5.30 0.07 -13.36 16 18 N -0.72 -10.32 5.57 -58.67 -0.33 -10.65 16 19 C 0.13 1.65 6.06 -67.93 -0.41 1.24 16 20 H 0.14 2.08 7.40 -51.93 -0.38 1.70 16 21 C -0.19 -1.82 9.79 -26.73 -0.26 -2.08 16 22 C -0.13 -1.36 5.97 -91.77 -0.55 -1.91 16 23 H 0.11 1.06 8.14 -51.93 -0.42 0.64 16 24 C -0.04 -0.48 5.61 -104.62 -0.59 -1.07 16 25 C -0.11 -1.17 9.74 -39.58 -0.39 -1.55 16 26 C -0.12 -1.12 10.05 -39.58 -0.40 -1.51 16 27 C -0.13 -1.16 10.05 -39.58 -0.40 -1.55 16 28 C -0.12 -1.09 10.05 -39.58 -0.40 -1.48 16 29 C -0.12 -1.21 9.30 -39.58 -0.37 -1.58 16 30 H 0.28 6.40 8.30 -40.82 -0.34 6.06 16 31 H 0.13 3.48 6.14 -52.49 -0.32 3.16 16 32 H 0.09 1.88 8.06 -52.49 -0.42 1.46 16 33 H 0.09 1.90 8.06 -52.49 -0.42 1.47 16 34 H 0.11 2.70 6.19 -52.48 -0.33 2.38 16 35 H 0.40 7.26 8.14 -40.82 -0.33 6.93 16 36 H 0.40 4.50 8.84 -40.82 -0.36 4.14 16 37 H 0.10 0.89 6.18 -51.93 -0.32 0.57 16 38 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.12 1.12 8.06 -52.48 -0.42 0.70 16 40 H 0.12 0.90 8.06 -52.49 -0.42 0.47 16 41 H 0.12 0.82 8.06 -52.49 -0.42 0.39 16 42 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 43 H 0.12 1.08 6.02 -52.49 -0.32 0.77 16 LS Contribution 362.67 15.07 5.47 5.47 Total: -1.00 -30.36 362.67 -12.06 -42.42 By element: Atomic # 1 Polarization: 23.65 SS G_CDS: -5.28 Total: 18.37 kcal Atomic # 6 Polarization: -14.61 SS G_CDS: -7.49 Total: -22.09 kcal Atomic # 7 Polarization: -44.05 SS G_CDS: 0.19 Total: -43.86 kcal Atomic # 8 Polarization: -13.43 SS G_CDS: 0.07 Total: -13.36 kcal Atomic # 14 Polarization: 18.08 SS G_CDS: -5.03 Total: 13.05 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -30.36 -12.06 -42.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201937997.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.661 kcal (2) G-P(sol) polarization free energy of solvation -30.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.424 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds