Wall clock time and date at job start Tue Mar 31 2020 13:47:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30856 * 1 3 3 Si 1.86807 * 119.99836 * 2 1 4 4 H 1.48501 * 109.47068 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.46996 * 300.00365 * 3 2 1 6 6 H 1.48501 * 109.47081 * 60.00309 * 3 2 1 7 7 C 1.39946 * 120.00456 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00373 * 175.66424 * 7 2 1 9 9 C 1.41073 * 119.99886 * 355.65963 * 7 2 1 10 10 C 1.40738 * 120.29829 * 34.75773 * 9 7 2 11 11 C 1.36466 * 119.94016 * 179.97438 * 10 9 7 12 12 C 1.38868 * 120.58257 * 359.97438 * 11 10 9 13 13 C 1.38221 * 120.61011 * 359.74554 * 12 11 10 14 14 C 1.38643 * 120.03520 * 0.51162 * 13 12 11 15 15 N 1.39132 * 120.28611 * 179.77079 * 14 13 12 16 16 C 1.34780 * 119.99831 * 34.55576 * 15 14 13 17 17 O 1.21577 * 120.00150 * 355.81065 * 16 15 14 18 18 N 1.34775 * 119.99600 * 175.80956 * 16 15 14 19 19 C 1.46502 * 119.99752 * 180.02562 * 18 16 15 20 20 H 1.08999 * 115.56227 * 9.31401 * 19 18 16 21 21 C 1.53001 * 117.49997 * 223.62347 * 19 18 16 22 22 C 1.53002 * 117.49955 * 154.99813 * 19 18 16 23 23 H 1.08998 * 117.51966 * 0.02562 * 22 19 18 24 24 C 1.50697 * 117.49949 * 214.97634 * 22 19 18 25 25 C 1.38244 * 119.99754 * 119.99177 * 24 22 19 26 26 C 1.38230 * 120.00097 * 180.25665 * 25 24 22 27 27 C 1.38237 * 119.99935 * 359.53097 * 26 25 24 28 28 C 1.38232 * 120.00057 * 0.42131 * 27 26 25 29 29 C 1.38230 * 120.00430 * 299.96614 * 24 22 19 30 30 H 0.97002 * 120.00450 * 359.97438 * 1 2 3 31 31 H 1.07994 * 120.02774 * 359.96033 * 10 9 7 32 32 H 1.08000 * 119.70686 * 179.97438 * 11 10 9 33 33 H 1.07994 * 119.69516 * 180.02562 * 12 11 10 34 34 H 1.08003 * 119.98369 * 180.28360 * 13 12 11 35 35 H 0.96998 * 120.00237 * 214.56168 * 15 14 13 36 36 H 0.96994 * 120.00683 * 0.02562 * 18 16 15 37 37 H 1.08996 * 117.50282 * 145.02354 * 21 19 18 38 38 H 1.08993 * 117.49845 * 359.97438 * 21 19 18 39 39 H 1.08005 * 119.99930 * 359.97438 * 25 24 22 40 40 H 1.07994 * 120.00200 * 179.72016 * 26 25 24 41 41 H 1.07994 * 120.00130 * 180.21487 * 27 26 25 42 42 H 1.07996 * 120.00217 * 179.78670 * 28 27 26 43 43 H 1.07995 * 119.99914 * 0.02562 * 29 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2425 1.6178 0.0000 4 1 3.7026 1.3465 -0.0006 5 1 1.8837 2.3965 -1.2124 6 1 1.8838 2.3965 1.2125 7 6 2.0084 -1.2119 -0.0005 8 1 3.0860 -1.2132 -0.0712 9 6 1.3061 -2.4320 0.0914 10 6 0.0439 -2.5721 -0.5152 11 6 -0.6288 -3.7558 -0.4221 12 6 -0.0789 -4.8287 0.2671 13 6 1.1616 -4.7187 0.8667 14 6 1.8649 -3.5262 0.7927 15 7 3.1119 -3.4082 1.3984 16 6 3.9449 -4.4670 1.4375 17 8 3.5780 -5.5452 1.0121 18 7 5.1846 -4.3304 1.9482 19 6 6.0903 -5.4812 1.9903 20 1 5.7520 -6.3659 1.4510 21 6 6.8950 -5.7004 3.2730 22 6 7.5936 -5.1968 2.0083 23 1 7.9090 -4.1537 1.9894 24 6 8.4930 -6.1614 1.2793 25 6 9.2862 -5.7152 0.2387 26 6 10.1073 -6.6010 -0.4335 27 6 10.1426 -7.9312 -0.0589 28 6 9.3502 -8.3772 0.9823 29 6 8.5254 -7.4923 1.6514 30 1 -0.4851 0.8400 0.0004 31 1 -0.3920 -1.7436 -1.0535 32 1 -1.5973 -3.8591 -0.8886 33 1 -0.6236 -5.7590 0.3314 34 1 1.5817 -5.5610 1.3964 35 1 3.3817 -2.5640 1.7925 36 1 5.4773 -3.4704 2.2879 37 1 7.0860 -6.7294 3.5777 38 1 6.7508 -4.9883 4.0854 39 1 9.2609 -4.6753 -0.0520 40 1 10.7236 -6.2533 -1.2493 41 1 10.7867 -8.6225 -0.5818 42 1 9.3751 -9.4171 1.2727 43 1 7.9057 -7.8409 2.4643 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001201937997.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:47:22 Heat of formation + Delta-G solvation = 29.749083 kcal Electronic energy + Delta-G solvation = -25324.710412 eV Core-core repulsion = 21720.507666 eV Total energy + Delta-G solvation = -3604.202746 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.49355 -40.48954 -39.22734 -37.93487 -35.45866 -35.44171 -34.11892 -31.82311 -31.46160 -31.16339 -29.85497 -27.06938 -24.80657 -24.21884 -23.30476 -22.90222 -22.24325 -21.61075 -21.19911 -19.52284 -19.04906 -18.17515 -17.90359 -17.12464 -16.72963 -16.25934 -15.98961 -15.95296 -15.70575 -15.44586 -14.97876 -14.78672 -14.43066 -14.23706 -14.20773 -13.80948 -13.67857 -13.55286 -13.00919 -12.85212 -12.81526 -12.74892 -12.41207 -12.15003 -12.10416 -11.98194 -11.88136 -11.56267 -11.44207 -11.13961 -11.03956 -10.69901 -10.03820 -9.80825 -9.32509 -9.20090 -8.73374 -8.41070 -6.33486 0.39425 0.51545 0.91149 1.10985 1.43292 1.52726 1.57171 1.71843 2.17000 2.25166 2.73446 2.83838 3.15051 3.36811 3.70439 3.72670 3.78171 3.93484 4.03963 4.16650 4.27359 4.31527 4.51154 4.61044 4.64645 4.72486 4.73638 4.79459 4.92945 5.05694 5.13436 5.17371 5.18511 5.24556 5.36122 5.47583 5.53803 5.60788 5.64235 5.71974 5.78598 5.86564 6.08668 6.13272 6.20127 6.25647 6.37986 6.72526 6.93940 7.04174 7.18655 7.65947 8.45320 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.014453 B = 0.002814 C = 0.002536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1936.787115 B = 9948.660137 C =11036.419847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.839 5.839 2 C 0.031 3.969 3 Si 0.987 3.013 4 H -0.254 1.254 5 H -0.273 1.273 6 H -0.269 1.269 7 C -0.488 4.488 8 H 0.078 0.922 9 C 0.064 3.936 10 C -0.163 4.163 11 C -0.126 4.126 12 C -0.217 4.217 13 C -0.110 4.110 14 C 0.040 3.960 15 N -0.651 5.651 16 C 0.697 3.303 17 O -0.622 6.622 18 N -0.702 5.702 19 C 0.096 3.904 20 H 0.111 0.889 21 C -0.165 4.165 22 C -0.115 4.115 23 H 0.128 0.872 24 C -0.066 4.066 25 C -0.128 4.128 26 C -0.128 4.128 27 C -0.133 4.133 28 C -0.126 4.126 29 C -0.132 4.132 30 H 0.284 0.716 31 H 0.117 0.883 32 H 0.112 0.888 33 H 0.115 0.885 34 H 0.109 0.891 35 H 0.410 0.590 36 H 0.412 0.588 37 H 0.117 0.883 38 H 0.118 0.882 39 H 0.128 0.872 40 H 0.139 0.861 41 H 0.141 0.859 42 H 0.141 0.859 43 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.810 -6.878 5.284 20.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.467 5.467 2 C -0.182 4.182 3 Si 0.809 3.191 4 H -0.178 1.178 5 H -0.199 1.199 6 H -0.193 1.193 7 C -0.519 4.519 8 H 0.096 0.904 9 C 0.061 3.939 10 C -0.183 4.183 11 C -0.145 4.145 12 C -0.237 4.237 13 C -0.130 4.130 14 C -0.055 4.055 15 N -0.297 5.297 16 C 0.398 3.602 17 O -0.503 6.503 18 N -0.356 5.356 19 C -0.011 4.011 20 H 0.129 0.871 21 C -0.203 4.203 22 C -0.134 4.134 23 H 0.146 0.854 24 C -0.066 4.066 25 C -0.146 4.146 26 C -0.146 4.146 27 C -0.151 4.151 28 C -0.144 4.144 29 C -0.150 4.150 30 H 0.094 0.906 31 H 0.134 0.866 32 H 0.130 0.870 33 H 0.133 0.867 34 H 0.127 0.873 35 H 0.247 0.753 36 H 0.249 0.751 37 H 0.135 0.865 38 H 0.136 0.864 39 H 0.146 0.854 40 H 0.157 0.843 41 H 0.159 0.841 42 H 0.158 0.842 43 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 18.314 -7.668 4.909 20.452 hybrid contribution 0.097 1.479 0.113 1.486 sum 18.411 -6.189 5.022 20.062 Atomic orbital electron populations 1.69858 1.08756 1.29851 1.38223 1.26725 0.95644 1.04235 0.91561 0.85069 0.79332 0.76271 0.78455 1.17782 1.19864 1.19349 1.19487 0.94723 0.90436 1.47250 0.90406 1.17801 0.93888 0.92538 0.89715 1.21201 0.97262 0.96903 1.02931 1.20774 0.99464 0.93765 1.00518 1.20690 0.97099 0.99093 1.06794 1.20847 0.94390 0.96598 1.01171 1.17775 0.87473 0.97136 1.03163 1.41845 1.14998 1.13641 1.59190 1.16093 0.81165 0.84058 0.78882 1.90830 1.76776 1.27405 1.55306 1.44254 1.11471 1.13681 1.66193 1.21483 0.86168 0.90424 1.03001 0.87073 1.23766 1.00711 1.04329 0.91485 1.21627 0.91365 0.99903 1.00548 0.85400 1.19265 0.96864 0.93972 0.96506 1.21228 0.96878 1.00707 0.95830 1.21439 0.99146 0.93896 1.00114 1.21492 0.99750 0.96218 0.97637 1.21451 0.96278 1.00491 0.96195 1.21320 0.99851 0.92962 1.00873 0.90581 0.86554 0.86960 0.86675 0.87321 0.75345 0.75133 0.86500 0.86393 0.85392 0.84330 0.84087 0.84150 0.84882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -42.75 10.61 21.83 0.23 -42.51 16 2 C 0.03 1.49 5.42 85.25 0.46 1.95 16 3 Si 0.99 36.53 29.56 68.60 2.03 38.55 16 4 H -0.25 -8.94 7.11 99.48 0.71 -8.24 16 5 H -0.27 -10.01 7.11 99.48 0.71 -9.30 16 6 H -0.27 -9.61 7.11 99.48 0.71 -8.90 16 7 C -0.49 -24.76 8.23 23.38 0.19 -24.56 16 8 H 0.08 3.75 7.64 -2.91 -0.02 3.72 16 9 C 0.06 3.43 5.56 -21.18 -0.12 3.31 16 10 C -0.16 -8.66 8.62 22.47 0.19 -8.47 16 11 C -0.13 -6.10 9.97 22.01 0.22 -5.88 16 12 C -0.22 -10.25 10.04 22.42 0.22 -10.02 16 13 C -0.11 -5.43 8.69 22.36 0.19 -5.24 16 14 C 0.04 1.98 6.34 38.88 0.25 2.22 16 15 N -0.65 -26.89 4.96 -315.94 -1.57 -28.45 16 16 C 0.70 27.33 8.40 179.05 1.50 28.84 16 17 O -0.62 -29.35 13.32 -3.96 -0.05 -29.40 16 18 N -0.70 -19.53 5.57 -457.82 -2.55 -22.08 16 19 C 0.10 2.38 6.06 44.99 0.27 2.65 16 20 H 0.11 3.43 7.40 -2.39 -0.02 3.41 16 21 C -0.16 -2.80 9.79 30.60 0.30 -2.50 16 22 C -0.11 -2.17 5.97 -11.54 -0.07 -2.24 16 23 H 0.13 2.07 8.14 -2.39 -0.02 2.05 16 24 C -0.07 -1.34 5.61 -19.87 -0.11 -1.45 16 25 C -0.13 -2.53 9.74 22.27 0.22 -2.31 16 26 C -0.13 -2.24 10.05 22.27 0.22 -2.01 16 27 C -0.13 -2.17 10.05 22.27 0.22 -1.95 16 28 C -0.13 -2.14 10.05 22.27 0.22 -1.91 16 29 C -0.13 -2.50 9.30 22.27 0.21 -2.29 16 30 H 0.28 13.16 8.30 -92.71 -0.77 12.39 16 31 H 0.12 6.43 6.14 -2.91 -0.02 6.41 16 32 H 0.11 4.74 8.06 -2.91 -0.02 4.71 16 33 H 0.12 4.74 8.06 -2.91 -0.02 4.72 16 34 H 0.11 5.40 6.19 -2.91 -0.02 5.38 16 35 H 0.41 14.84 8.14 -92.71 -0.75 14.08 16 36 H 0.41 8.71 8.84 -92.71 -0.82 7.89 16 37 H 0.12 1.72 6.18 -2.39 -0.01 1.71 16 38 H 0.12 1.66 8.14 -2.39 -0.02 1.64 16 39 H 0.13 2.23 8.06 -2.91 -0.02 2.21 16 40 H 0.14 1.81 8.06 -2.91 -0.02 1.79 16 41 H 0.14 1.60 8.06 -2.91 -0.02 1.57 16 42 H 0.14 1.72 8.06 -2.91 -0.02 1.70 16 43 H 0.13 2.14 6.02 -2.91 -0.02 2.12 16 Total: -1.00 -66.87 362.67 2.19 -64.69 By element: Atomic # 1 Polarization: 51.59 SS G_CDS: -0.51 Total: 51.08 kcal Atomic # 6 Polarization: -36.48 SS G_CDS: 4.61 Total: -31.87 kcal Atomic # 7 Polarization: -89.17 SS G_CDS: -3.88 Total: -93.05 kcal Atomic # 8 Polarization: -29.35 SS G_CDS: -0.05 Total: -29.40 kcal Atomic # 14 Polarization: 36.53 SS G_CDS: 2.03 Total: 38.55 kcal Total: -66.87 2.19 -64.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201937997.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.434 kcal (2) G-P(sol) polarization free energy of solvation -66.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.685 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds