Wall clock time and date at job start Tue Mar 31 2020 13:01:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46907 * 109.46690 * 2 1 4 4 C 1.46900 * 109.47082 * 240.00456 * 2 1 3 5 5 C 1.46898 * 109.47796 * 119.99868 * 2 1 3 6 6 C 1.52998 * 109.46595 * 64.51945 * 5 2 1 7 7 H 1.08993 * 109.47135 * 53.29250 * 6 5 2 8 8 C 1.50708 * 109.47030 * 173.29097 * 6 5 2 9 9 H 1.07987 * 120.00035 * 240.00125 * 8 6 5 10 10 C 1.37879 * 119.99643 * 59.99875 * 8 6 5 11 11 N 1.31511 * 120.00162 * 0.02562 * 10 8 6 12 12 Si 1.86803 * 119.99777 * 179.97438 * 10 8 6 13 13 H 1.48505 * 109.46907 * 60.00465 * 12 10 8 14 14 H 1.48502 * 109.46986 * 180.02562 * 12 10 8 15 15 H 1.48495 * 109.47173 * 300.00500 * 12 10 8 16 16 O 1.42907 * 109.47444 * 293.29151 * 6 5 2 17 17 C 1.42896 * 114.00190 * 150.00273 * 16 6 5 18 18 C 1.50690 * 109.47102 * 179.97438 * 17 16 6 19 19 C 1.39494 * 119.21244 * 270.02052 * 18 17 16 20 20 C 1.35510 * 121.58567 * 180.02562 * 19 18 17 21 21 C 1.41758 * 119.89869 * 0.02562 * 20 19 18 22 22 N 1.32328 * 131.00329 * 180.02562 * 21 20 19 23 23 S 1.55539 * 109.42029 * 179.97438 * 22 21 20 24 24 N 1.55545 * 100.20560 * 359.97438 * 23 22 21 25 25 C 1.32335 * 109.41838 * 359.97438 * 24 23 22 26 26 C 1.35513 * 119.21104 * 89.99843 * 18 17 16 27 27 H 1.09007 * 109.46995 * 290.76807 * 1 2 3 28 28 H 1.08999 * 109.47640 * 50.76965 * 1 2 3 29 29 H 1.09004 * 109.47196 * 170.77421 * 1 2 3 30 30 H 1.09003 * 109.47252 * 180.02562 * 3 2 1 31 31 H 1.08998 * 109.47291 * 300.00096 * 3 2 1 32 32 H 1.08997 * 109.47218 * 60.00351 * 3 2 1 33 33 H 1.09001 * 109.46909 * 299.99424 * 4 2 1 34 34 H 1.08998 * 109.47351 * 59.99626 * 4 2 1 35 35 H 1.08994 * 109.47100 * 179.97438 * 4 2 1 36 36 H 1.09003 * 109.46936 * 304.52248 * 5 2 1 37 37 H 1.08992 * 109.47662 * 184.52078 * 5 2 1 38 38 H 0.97002 * 120.00036 * 179.97438 * 11 10 8 39 39 H 1.09003 * 109.46987 * 59.99686 * 17 16 6 40 40 H 1.09002 * 109.47118 * 300.00486 * 17 16 6 41 41 H 1.08005 * 119.20403 * 0.02562 * 19 18 17 42 42 H 1.08002 * 120.04679 * 179.97438 * 20 19 18 43 43 H 1.08001 * 120.04083 * 0.02562 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9586 1.3851 0.0000 4 6 1.9586 -0.6924 -1.1995 5 6 1.9588 -0.6924 1.1994 6 6 1.5437 -2.1640 1.1438 7 1 1.8702 -2.5981 0.1989 8 6 2.1831 -2.9098 2.2867 9 1 2.8496 -3.7357 2.0870 10 6 1.9172 -2.5375 3.5874 11 7 1.1052 -1.5320 3.8306 12 14 2.7091 -3.4623 5.0041 13 1 4.1868 -3.3609 4.8969 14 1 2.2639 -2.8711 6.2916 15 1 2.3057 -4.8904 4.9500 16 8 0.1218 -2.2622 1.2471 17 6 -0.4339 -3.3894 0.5671 18 6 -1.9306 -3.3938 0.7420 19 6 -2.4867 -4.0642 1.8316 20 6 -3.8260 -4.0994 2.0351 21 6 -4.6961 -3.4445 1.1275 22 7 -6.0150 -3.3383 1.1125 23 16 -6.4524 -2.5007 -0.1230 24 7 -5.0637 -2.1915 -0.7518 25 6 -4.1137 -2.7417 -0.0129 26 6 -2.7042 -2.7461 -0.1627 27 1 -0.3633 0.3644 0.9610 28 1 -0.3634 0.6499 -0.7960 29 1 -0.3634 -1.0144 -0.1648 30 1 3.0486 1.3852 -0.0005 31 1 1.5952 1.8989 -0.8899 32 1 1.5953 1.8989 0.8900 33 1 1.5954 -1.7201 -1.1995 34 1 1.5953 -0.1786 -2.0894 35 1 3.0486 -0.6920 -1.1997 36 1 1.5308 -0.2275 2.0875 37 1 3.0457 -0.6228 1.2408 38 1 0.9178 -1.2703 4.7457 39 1 -0.0171 -4.3066 0.9832 40 1 -0.1919 -3.3292 -0.4940 41 1 -1.8341 -4.5672 2.5298 42 1 -4.2299 -4.6262 2.8870 43 1 -2.2473 -2.2350 -0.9973 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001210134041.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:01:10 Heat of formation + Delta-G solvation = 141.621191 kcal Electronic energy + Delta-G solvation = -25970.737677 eV Core-core repulsion = 22455.059850 eV Total energy + Delta-G solvation = -3515.677828 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 322.133 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.23764 -41.79202 -38.87975 -37.17262 -34.80768 -34.39056 -31.96577 -31.09113 -30.35844 -30.18645 -29.24754 -27.64105 -25.82798 -24.86207 -23.08530 -22.57230 -22.48812 -20.23205 -18.98580 -18.61508 -18.42265 -18.04095 -17.90700 -17.21516 -16.91645 -16.64285 -16.01124 -15.86866 -15.41261 -15.01071 -14.88145 -14.74906 -14.38085 -14.09797 -13.98208 -13.87715 -13.69184 -13.54539 -13.40042 -13.20120 -12.71073 -12.64400 -12.53945 -12.49273 -12.25416 -12.11039 -12.05760 -11.76793 -11.50279 -11.32312 -11.05672 -10.10805 -9.81977 -9.56803 -9.31057 -7.67744 -5.88574 -1.04454 0.37758 0.45937 0.53990 0.86871 0.88188 2.14540 2.26384 2.30930 2.33485 2.38779 2.43488 2.53995 3.05022 3.16120 3.20200 3.20725 3.25717 3.45130 3.57999 3.69733 3.73308 3.75830 3.79337 3.82464 3.90258 3.96934 4.13204 4.21267 4.23375 4.27690 4.33949 4.39191 4.56116 4.74943 4.86321 4.94128 5.07760 5.24747 5.30857 5.46605 5.59926 5.97092 6.25018 6.32151 6.68467 7.27462 7.95190 9.34825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.271 5.271 3 C -0.041 4.041 4 C -0.046 4.046 5 C -0.003 4.003 6 C 0.199 3.801 7 H 0.033 0.967 8 C -0.568 4.568 9 H 0.072 0.928 10 C 0.094 3.906 11 N -0.859 5.859 12 Si 0.897 3.103 13 H -0.271 1.271 14 H -0.280 1.280 15 H -0.269 1.269 16 O -0.367 6.367 17 C 0.102 3.898 18 C -0.043 4.043 19 C -0.067 4.067 20 C -0.069 4.069 21 C 0.082 3.918 22 N -0.594 5.594 23 S 0.790 5.210 24 N -0.598 5.598 25 C 0.079 3.921 26 C -0.064 4.064 27 H 0.119 0.881 28 H 0.094 0.906 29 H 0.133 0.867 30 H 0.112 0.888 31 H 0.107 0.893 32 H 0.115 0.885 33 H 0.119 0.881 34 H 0.108 0.892 35 H 0.114 0.886 36 H 0.156 0.844 37 H 0.116 0.884 38 H 0.276 0.724 39 H 0.070 0.930 40 H 0.042 0.958 41 H 0.143 0.857 42 H 0.141 0.859 43 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.837 8.461 -12.790 15.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 N 0.070 4.930 3 C -0.183 4.183 4 C -0.188 4.188 5 C -0.121 4.121 6 C 0.143 3.857 7 H 0.051 0.949 8 C -0.605 4.605 9 H 0.090 0.910 10 C -0.116 4.116 11 N -0.493 5.493 12 Si 0.723 3.277 13 H -0.196 1.196 14 H -0.205 1.205 15 H -0.194 1.194 16 O -0.288 6.288 17 C 0.025 3.975 18 C -0.050 4.050 19 C -0.091 4.091 20 C -0.093 4.093 21 C -0.077 4.077 22 N -0.445 5.445 23 S 0.838 5.162 24 N -0.450 5.450 25 C -0.080 4.080 26 C -0.089 4.089 27 H 0.138 0.862 28 H 0.113 0.887 29 H 0.151 0.849 30 H 0.131 0.869 31 H 0.126 0.874 32 H 0.134 0.866 33 H 0.137 0.863 34 H 0.126 0.874 35 H 0.132 0.868 36 H 0.174 0.826 37 H 0.134 0.866 38 H 0.086 0.914 39 H 0.089 0.911 40 H 0.060 0.940 41 H 0.161 0.839 42 H 0.159 0.841 43 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -0.508 9.343 -13.240 16.213 hybrid contribution 2.073 -1.068 1.399 2.719 sum 1.565 8.276 -11.841 14.531 Atomic orbital electron populations 1.24316 0.76345 1.09724 1.07664 1.46393 1.15628 1.14298 1.16637 1.23988 1.04822 0.81436 1.08004 1.24044 1.04938 1.02515 0.87289 1.24949 1.02955 0.98048 0.86196 1.19955 0.80371 0.88353 0.96980 0.94908 1.21202 1.30939 1.18215 0.90130 0.90970 1.24970 0.92934 0.94249 0.99412 1.69633 1.31760 1.25686 1.22240 0.86506 0.79924 0.80683 0.80540 1.19597 1.20535 1.19371 1.88131 1.22459 1.43295 1.74868 1.21151 0.88212 0.93066 0.95030 1.19323 0.95353 0.96179 0.94142 1.20754 0.94303 0.97404 0.96672 1.20297 0.91544 0.99423 0.98078 1.21401 0.87192 1.01192 0.97911 1.72229 1.17600 1.26273 1.28434 1.78643 1.11502 1.25280 1.00784 1.72192 1.07673 1.30070 1.35060 1.21247 0.95700 0.98634 0.92405 1.19945 0.87598 1.00725 1.00597 0.86247 0.88698 0.84875 0.86950 0.87396 0.86608 0.86296 0.87382 0.86761 0.82619 0.86592 0.91360 0.91138 0.93962 0.83888 0.84135 0.84874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 0.33 7.17 60.06 0.43 0.76 16 2 N -0.27 2.62 0.05 -395.62 -0.02 2.60 16 3 C -0.04 0.49 8.00 60.07 0.48 0.97 16 4 C -0.05 0.52 7.54 60.06 0.45 0.97 16 5 C 0.00 0.01 3.53 -3.83 -0.01 0.00 16 6 C 0.20 0.01 1.85 -27.88 -0.05 -0.04 16 7 H 0.03 -0.08 5.49 -51.93 -0.28 -0.36 16 8 C -0.57 -3.45 8.89 -34.44 -0.31 -3.76 16 9 H 0.07 0.53 7.81 -52.49 -0.41 0.12 16 10 C 0.09 0.77 5.24 -17.82 -0.09 0.67 16 11 N -0.86 -7.11 10.95 55.43 0.61 -6.50 16 12 Si 0.90 7.72 29.54 -169.99 -5.02 2.70 16 13 H -0.27 -2.44 7.11 56.52 0.40 -2.04 16 14 H -0.28 -2.75 7.11 56.52 0.40 -2.35 16 15 H -0.27 -2.58 7.11 56.52 0.40 -2.17 16 16 O -0.37 -0.24 6.44 -35.23 -0.23 -0.47 16 17 C 0.10 -0.05 5.14 36.00 0.18 0.14 16 18 C -0.04 -0.02 5.46 -105.13 -0.57 -0.60 16 19 C -0.07 -0.11 9.51 -40.09 -0.38 -0.50 16 20 C -0.07 -0.18 10.09 -39.21 -0.40 -0.57 16 21 C 0.08 0.31 7.16 -83.17 -0.60 -0.28 16 22 N -0.59 -2.37 11.44 25.62 0.29 -2.08 16 23 S 0.79 0.83 23.60 -107.50 -2.54 -1.70 16 24 N -0.60 -1.64 11.44 25.63 0.29 -1.35 16 25 C 0.08 0.22 7.16 -83.17 -0.60 -0.37 16 26 C -0.06 -0.02 9.66 -39.21 -0.38 -0.40 16 27 H 0.12 -0.75 7.94 -51.93 -0.41 -1.16 16 28 H 0.09 -1.05 8.01 -51.93 -0.42 -1.47 16 29 H 0.13 -0.89 5.02 -51.93 -0.26 -1.15 16 30 H 0.11 -1.42 8.12 -51.93 -0.42 -1.84 16 31 H 0.11 -1.49 8.07 -51.93 -0.42 -1.91 16 32 H 0.12 -1.30 8.14 -51.93 -0.42 -1.72 16 33 H 0.12 -1.20 5.86 -51.93 -0.30 -1.50 16 34 H 0.11 -1.46 8.14 -51.93 -0.42 -1.88 16 35 H 0.11 -1.38 8.14 -51.93 -0.42 -1.80 16 36 H 0.16 -0.10 6.12 -51.93 -0.32 -0.42 16 37 H 0.12 -0.53 8.09 -51.93 -0.42 -0.95 16 38 H 0.28 2.56 8.31 -40.82 -0.34 2.23 16 39 H 0.07 0.09 8.07 -51.93 -0.42 -0.33 16 40 H 0.04 -0.15 8.00 -51.93 -0.42 -0.57 16 41 H 0.14 0.18 8.06 -52.48 -0.42 -0.24 16 42 H 0.14 0.20 8.06 -52.49 -0.42 -0.22 16 43 H 0.13 -0.35 8.04 -52.49 -0.42 -0.77 16 LS Contribution 354.65 15.07 5.34 5.34 Total: 0.00 -17.71 354.65 -9.28 -26.99 By element: Atomic # 1 Polarization: -16.35 SS G_CDS: -6.17 Total: -22.53 kcal Atomic # 6 Polarization: -1.16 SS G_CDS: -1.84 Total: -3.00 kcal Atomic # 7 Polarization: -8.51 SS G_CDS: 1.17 Total: -7.33 kcal Atomic # 8 Polarization: -0.24 SS G_CDS: -0.23 Total: -0.47 kcal Atomic # 14 Polarization: 7.72 SS G_CDS: -5.02 Total: 2.70 kcal Atomic # 16 Polarization: 0.83 SS G_CDS: -2.54 Total: -1.70 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -17.71 -9.28 -26.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001210134041.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.609 kcal (2) G-P(sol) polarization free energy of solvation -17.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 150.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.988 kcal (6) G-S(sol) free energy of system = (1) + (5) 141.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds