Wall clock time and date at job start Tue Mar 31 2020 13:01:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46907 * 109.46690 * 2 1 4 4 C 1.46900 * 109.47082 * 240.00456 * 2 1 3 5 5 C 1.46898 * 109.47796 * 119.99868 * 2 1 3 6 6 C 1.52998 * 109.46595 * 64.51945 * 5 2 1 7 7 H 1.08993 * 109.47135 * 53.29250 * 6 5 2 8 8 C 1.50708 * 109.47030 * 173.29097 * 6 5 2 9 9 H 1.07987 * 120.00035 * 240.00125 * 8 6 5 10 10 C 1.37879 * 119.99643 * 59.99875 * 8 6 5 11 11 N 1.31511 * 120.00162 * 0.02562 * 10 8 6 12 12 Si 1.86803 * 119.99777 * 179.97438 * 10 8 6 13 13 H 1.48505 * 109.46907 * 60.00465 * 12 10 8 14 14 H 1.48502 * 109.46986 * 180.02562 * 12 10 8 15 15 H 1.48495 * 109.47173 * 300.00500 * 12 10 8 16 16 O 1.42907 * 109.47444 * 293.29151 * 6 5 2 17 17 C 1.42896 * 114.00190 * 150.00273 * 16 6 5 18 18 C 1.50690 * 109.47102 * 179.97438 * 17 16 6 19 19 C 1.39494 * 119.21244 * 270.02052 * 18 17 16 20 20 C 1.35510 * 121.58567 * 180.02562 * 19 18 17 21 21 C 1.41758 * 119.89869 * 0.02562 * 20 19 18 22 22 N 1.32328 * 131.00329 * 180.02562 * 21 20 19 23 23 S 1.55539 * 109.42029 * 179.97438 * 22 21 20 24 24 N 1.55545 * 100.20560 * 359.97438 * 23 22 21 25 25 C 1.32335 * 109.41838 * 359.97438 * 24 23 22 26 26 C 1.35513 * 119.21104 * 89.99843 * 18 17 16 27 27 H 1.09007 * 109.46995 * 290.76807 * 1 2 3 28 28 H 1.08999 * 109.47640 * 50.76965 * 1 2 3 29 29 H 1.09004 * 109.47196 * 170.77421 * 1 2 3 30 30 H 1.09003 * 109.47252 * 180.02562 * 3 2 1 31 31 H 1.08998 * 109.47291 * 300.00096 * 3 2 1 32 32 H 1.08997 * 109.47218 * 60.00351 * 3 2 1 33 33 H 1.09001 * 109.46909 * 299.99424 * 4 2 1 34 34 H 1.08998 * 109.47351 * 59.99626 * 4 2 1 35 35 H 1.08994 * 109.47100 * 179.97438 * 4 2 1 36 36 H 1.09003 * 109.46936 * 304.52248 * 5 2 1 37 37 H 1.08992 * 109.47662 * 184.52078 * 5 2 1 38 38 H 0.97002 * 120.00036 * 179.97438 * 11 10 8 39 39 H 1.09003 * 109.46987 * 59.99686 * 17 16 6 40 40 H 1.09002 * 109.47118 * 300.00486 * 17 16 6 41 41 H 1.08005 * 119.20403 * 0.02562 * 19 18 17 42 42 H 1.08002 * 120.04679 * 179.97438 * 20 19 18 43 43 H 1.08001 * 120.04083 * 0.02562 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9586 1.3851 0.0000 4 6 1.9586 -0.6924 -1.1995 5 6 1.9588 -0.6924 1.1994 6 6 1.5437 -2.1640 1.1438 7 1 1.8702 -2.5981 0.1989 8 6 2.1831 -2.9098 2.2867 9 1 2.8496 -3.7357 2.0870 10 6 1.9172 -2.5375 3.5874 11 7 1.1052 -1.5320 3.8306 12 14 2.7091 -3.4623 5.0041 13 1 4.1868 -3.3609 4.8969 14 1 2.2639 -2.8711 6.2916 15 1 2.3057 -4.8904 4.9500 16 8 0.1218 -2.2622 1.2471 17 6 -0.4339 -3.3894 0.5671 18 6 -1.9306 -3.3938 0.7420 19 6 -2.4867 -4.0642 1.8316 20 6 -3.8260 -4.0994 2.0351 21 6 -4.6961 -3.4445 1.1275 22 7 -6.0150 -3.3383 1.1125 23 16 -6.4524 -2.5007 -0.1230 24 7 -5.0637 -2.1915 -0.7518 25 6 -4.1137 -2.7417 -0.0129 26 6 -2.7042 -2.7461 -0.1627 27 1 -0.3633 0.3644 0.9610 28 1 -0.3634 0.6499 -0.7960 29 1 -0.3634 -1.0144 -0.1648 30 1 3.0486 1.3852 -0.0005 31 1 1.5952 1.8989 -0.8899 32 1 1.5953 1.8989 0.8900 33 1 1.5954 -1.7201 -1.1995 34 1 1.5953 -0.1786 -2.0894 35 1 3.0486 -0.6920 -1.1997 36 1 1.5308 -0.2275 2.0875 37 1 3.0457 -0.6228 1.2408 38 1 0.9178 -1.2703 4.7457 39 1 -0.0171 -4.3066 0.9832 40 1 -0.1919 -3.3292 -0.4940 41 1 -1.8341 -4.5672 2.5298 42 1 -4.2299 -4.6262 2.8870 43 1 -2.2473 -2.2350 -0.9973 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001210134041.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:01:10 Heat of formation + Delta-G solvation = 136.867312 kcal Electronic energy + Delta-G solvation = -25970.943821 eV Core-core repulsion = 22455.059850 eV Total energy + Delta-G solvation = -3515.883971 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 322.133 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.57166 -41.90201 -38.86561 -37.23727 -34.98904 -34.74000 -32.04198 -31.03424 -29.53591 -29.42835 -29.15666 -27.69454 -25.88226 -24.50351 -23.19354 -22.58283 -22.36142 -20.34146 -18.90658 -18.40523 -18.05358 -17.76134 -17.36833 -17.27165 -16.88485 -16.75286 -16.38249 -15.99492 -15.35557 -14.98703 -14.56061 -14.24418 -13.98689 -13.60855 -13.51631 -13.32673 -13.19535 -13.12392 -13.09310 -12.91042 -12.88218 -12.80499 -12.68464 -12.63370 -12.57439 -12.52083 -12.33483 -11.95373 -11.82033 -11.57142 -11.10667 -10.72494 -9.90849 -9.66910 -9.40403 -8.25879 -6.40509 -1.16215 0.30739 0.42322 0.75473 0.78294 1.12484 1.38431 1.47530 1.55408 2.36083 2.41339 2.96517 3.06750 3.08958 3.18275 3.23752 3.46814 3.82362 3.94217 4.00583 4.08804 4.14056 4.23897 4.30374 4.34867 4.42347 4.47822 4.53202 4.57282 4.60104 4.72965 4.81967 4.84009 4.84067 4.89498 4.90914 5.01937 5.11968 5.17241 5.34823 5.43338 5.53860 5.69215 5.86914 6.01072 6.47704 6.92570 7.41598 8.72285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.258 5.258 3 C -0.043 4.043 4 C -0.053 4.053 5 C 0.015 3.985 6 C 0.195 3.805 7 H 0.066 0.934 8 C -0.566 4.566 9 H 0.054 0.946 10 C 0.077 3.923 11 N -0.865 5.865 12 Si 0.906 3.094 13 H -0.276 1.276 14 H -0.301 1.301 15 H -0.287 1.287 16 O -0.374 6.374 17 C 0.102 3.898 18 C -0.049 4.049 19 C -0.069 4.069 20 C -0.089 4.089 21 C 0.060 3.940 22 N -0.633 5.633 23 S 0.849 5.151 24 N -0.611 5.611 25 C 0.063 3.937 26 C -0.049 4.049 27 H 0.092 0.908 28 H 0.132 0.868 29 H 0.119 0.881 30 H 0.123 0.877 31 H 0.139 0.861 32 H 0.104 0.896 33 H 0.108 0.892 34 H 0.141 0.859 35 H 0.125 0.875 36 H 0.124 0.876 37 H 0.125 0.875 38 H 0.262 0.738 39 H 0.048 0.952 40 H 0.085 0.915 41 H 0.139 0.861 42 H 0.140 0.860 43 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.219 10.285 -16.578 19.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 N 0.085 4.915 3 C -0.183 4.183 4 C -0.194 4.194 5 C -0.106 4.106 6 C 0.139 3.861 7 H 0.083 0.917 8 C -0.605 4.605 9 H 0.072 0.928 10 C -0.130 4.130 11 N -0.501 5.501 12 Si 0.736 3.264 13 H -0.201 1.201 14 H -0.227 1.227 15 H -0.213 1.213 16 O -0.294 6.294 17 C 0.026 3.974 18 C -0.056 4.056 19 C -0.093 4.093 20 C -0.113 4.113 21 C -0.097 4.097 22 N -0.485 5.485 23 S 0.896 5.104 24 N -0.464 5.464 25 C -0.094 4.094 26 C -0.073 4.073 27 H 0.111 0.889 28 H 0.150 0.850 29 H 0.137 0.863 30 H 0.141 0.859 31 H 0.157 0.843 32 H 0.122 0.878 33 H 0.127 0.873 34 H 0.160 0.840 35 H 0.143 0.857 36 H 0.142 0.858 37 H 0.143 0.857 38 H 0.072 0.928 39 H 0.067 0.933 40 H 0.103 0.897 41 H 0.156 0.844 42 H 0.158 0.842 43 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -0.096 11.158 -17.032 20.361 hybrid contribution 1.904 -1.675 2.494 3.557 sum 1.808 9.483 -14.537 17.451 Atomic orbital electron populations 1.24260 0.76783 1.09477 1.07600 1.45983 1.15137 1.15279 1.15127 1.24162 1.05587 0.79584 1.09001 1.24281 1.05827 1.02142 0.87141 1.24123 1.03081 0.95824 0.87561 1.19984 0.79601 0.90561 0.95943 0.91690 1.21564 1.29592 1.17719 0.91577 0.92765 1.25039 0.93762 0.94588 0.99596 1.69722 1.33248 1.26385 1.20744 0.86468 0.79559 0.79612 0.80791 1.20148 1.22710 1.21286 1.88142 1.22298 1.43258 1.75695 1.21223 0.87213 0.91794 0.97198 1.19397 0.96064 0.96290 0.93847 1.20882 0.94013 0.97284 0.97141 1.20362 0.91964 1.00441 0.98557 1.21614 0.87364 1.01959 0.98766 1.72081 1.18116 1.27924 1.30426 1.78297 1.10150 1.23104 0.98816 1.72119 1.08367 1.30402 1.35492 1.21503 0.96750 0.98949 0.92234 1.20270 0.86468 0.99612 1.00992 0.88928 0.84976 0.86294 0.85873 0.84301 0.87763 0.87345 0.84049 0.85655 0.85850 0.85728 0.92809 0.93330 0.89692 0.84357 0.84247 0.81350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 0.76 7.17 127.69 0.92 1.68 16 2 N -0.26 5.61 0.05 ******* -0.07 5.54 16 3 C -0.04 1.13 8.00 127.69 1.02 2.15 16 4 C -0.05 1.41 7.54 127.69 0.96 2.37 16 5 C 0.02 -0.13 3.53 86.30 0.30 0.18 16 6 C 0.20 -0.10 1.85 29.85 0.06 -0.04 16 7 H 0.07 -0.46 5.49 -2.39 -0.01 -0.47 16 8 C -0.57 -7.46 8.89 25.60 0.23 -7.24 16 9 H 0.05 0.87 7.81 -2.92 -0.02 0.84 16 10 C 0.08 1.42 5.24 84.66 0.44 1.86 16 11 N -0.87 -16.30 10.95 21.45 0.23 -16.06 16 12 Si 0.91 18.29 29.54 68.60 2.03 20.32 16 13 H -0.28 -5.63 7.11 99.48 0.71 -4.93 16 14 H -0.30 -6.98 7.11 99.48 0.71 -6.27 16 15 H -0.29 -6.46 7.11 99.48 0.71 -5.75 16 16 O -0.37 -0.38 6.44 -148.98 -0.96 -1.34 16 17 C 0.10 -0.18 5.14 71.23 0.37 0.19 16 18 C -0.05 -0.05 5.46 -20.20 -0.11 -0.16 16 19 C -0.07 -0.35 9.51 21.94 0.21 -0.14 16 20 C -0.09 -0.64 10.09 22.51 0.23 -0.41 16 21 C 0.06 0.53 7.16 41.97 0.30 0.83 16 22 N -0.63 -5.64 11.44 -72.86 -0.83 -6.47 16 23 S 0.85 1.60 23.60 -56.49 -1.33 0.26 16 24 N -0.61 -2.84 11.44 -72.83 -0.83 -3.67 16 25 C 0.06 0.34 7.16 41.97 0.30 0.64 16 26 C -0.05 0.04 9.66 22.51 0.22 0.25 16 27 H 0.09 -1.18 7.94 -2.38 -0.02 -1.20 16 28 H 0.13 -3.47 8.01 -2.39 -0.02 -3.49 16 29 H 0.12 -1.88 5.02 -2.39 -0.01 -1.89 16 30 H 0.12 -3.47 8.12 -2.39 -0.02 -3.49 16 31 H 0.14 -4.45 8.07 -2.39 -0.02 -4.47 16 32 H 0.10 -2.45 8.14 -2.39 -0.02 -2.47 16 33 H 0.11 -2.59 5.86 -2.39 -0.01 -2.60 16 34 H 0.14 -4.58 8.14 -2.39 -0.02 -4.60 16 35 H 0.12 -3.51 8.14 -2.39 -0.02 -3.53 16 36 H 0.12 -0.07 6.12 -2.39 -0.01 -0.08 16 37 H 0.12 -1.28 8.09 -2.39 -0.02 -1.30 16 38 H 0.26 5.65 8.31 -92.71 -0.77 4.88 16 39 H 0.05 0.14 8.07 -2.39 -0.02 0.12 16 40 H 0.09 -0.87 8.00 -2.39 -0.02 -0.89 16 41 H 0.14 0.71 8.06 -2.91 -0.02 0.69 16 42 H 0.14 0.81 8.06 -2.91 -0.02 0.79 16 43 H 0.17 -1.43 8.04 -2.91 -0.02 -1.46 16 Total: 0.00 -45.52 354.65 4.69 -40.84 By element: Atomic # 1 Polarization: -42.57 SS G_CDS: 1.01 Total: -41.56 kcal Atomic # 6 Polarization: -3.29 SS G_CDS: 5.44 Total: 2.15 kcal Atomic # 7 Polarization: -19.17 SS G_CDS: -1.50 Total: -20.67 kcal Atomic # 8 Polarization: -0.38 SS G_CDS: -0.96 Total: -1.34 kcal Atomic # 14 Polarization: 18.29 SS G_CDS: 2.03 Total: 20.32 kcal Atomic # 16 Polarization: 1.60 SS G_CDS: -1.33 Total: 0.26 kcal Total: -45.52 4.69 -40.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001210134041.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.705 kcal (2) G-P(sol) polarization free energy of solvation -45.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 132.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.837 kcal (6) G-S(sol) free energy of system = (1) + (5) 136.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds