Wall clock time and date at job start Tue Mar 31 2020 13:15:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30831 * 1 3 3 Si 1.86797 * 120.00017 * 2 1 4 4 H 1.48499 * 109.47395 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47018 * 299.99898 * 3 2 1 6 6 H 1.48503 * 109.47040 * 59.99465 * 3 2 1 7 7 C 1.39932 * 120.00187 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00151 * 168.99448 * 7 2 1 9 9 C 1.41410 * 120.00084 * 348.99727 * 7 2 1 10 10 C 1.40773 * 120.21171 * 331.77923 * 9 7 2 11 11 C 1.37636 * 119.88698 * 179.97438 * 10 9 7 12 12 C 1.38527 * 120.32130 * 0.02562 * 11 10 9 13 13 C 1.39246 * 120.43110 * 0.02562 * 12 11 10 14 14 N 1.39957 * 119.95038 * 179.97438 * 13 12 11 15 15 C 1.34777 * 120.00012 * 146.37955 * 14 13 12 16 16 O 1.21589 * 119.99708 * 354.82715 * 15 14 13 17 17 N 1.34771 * 119.99771 * 174.81713 * 15 14 13 18 18 C 1.46511 * 119.99667 * 180.27824 * 17 15 14 19 19 C 1.54347 * 110.82253 * 267.69848 * 18 17 15 20 20 C 1.51371 * 105.16778 * 215.43073 * 19 18 17 21 21 C 1.38494 * 130.38437 * 197.19267 * 20 19 18 22 22 C 1.38111 * 120.21171 * 179.97438 * 21 20 19 23 23 C 1.38251 * 119.93227 * 359.97438 * 22 21 20 24 24 C 1.38099 * 119.93582 * 0.02562 * 23 22 21 25 25 C 1.38218 * 109.76151 * 17.18730 * 20 19 18 26 26 C 1.51367 * 109.75650 * 0.02562 * 25 20 19 27 27 C 1.38274 * 120.10040 * 0.23087 * 13 12 11 28 28 H 0.96995 * 119.99953 * 0.02562 * 1 2 3 29 29 H 1.08003 * 120.05553 * 0.02562 * 10 9 7 30 30 H 1.08002 * 119.84023 * 179.97438 * 11 10 9 31 31 H 1.07999 * 119.78786 * 179.97438 * 12 11 10 32 32 H 0.96995 * 120.00207 * 326.38873 * 14 13 12 33 33 H 0.96999 * 120.00522 * 0.02562 * 17 15 14 34 34 H 1.08995 * 110.72751 * 31.32403 * 18 17 15 35 35 H 1.09005 * 110.30022 * 334.35122 * 19 18 17 36 36 H 1.08999 * 110.30431 * 96.50203 * 19 18 17 37 37 H 1.08000 * 119.89660 * 359.97438 * 21 20 19 38 38 H 1.07997 * 120.02912 * 179.97438 * 22 21 20 39 39 H 1.08004 * 120.02712 * 179.97438 * 23 22 21 40 40 H 1.08006 * 119.89073 * 180.02562 * 24 23 22 41 41 H 1.08994 * 110.30381 * 223.88726 * 26 25 20 42 42 H 1.09003 * 110.38357 * 101.77735 * 26 25 20 43 43 H 1.08003 * 120.15781 * 179.73273 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.7023 1.3464 0.0006 5 1 1.8836 2.3964 -1.2125 6 1 1.8834 2.3965 1.2125 7 6 2.0080 -1.2118 0.0005 8 1 3.0731 -1.2205 -0.1780 9 6 1.3205 -2.4251 0.2348 10 6 0.1514 -2.4369 1.0189 11 6 -0.5127 -3.6216 1.2422 12 6 -0.0361 -4.8036 0.6994 13 6 1.1196 -4.8075 -0.0773 14 7 1.5925 -6.0076 -0.6203 15 6 2.2061 -6.0088 -1.8203 16 8 2.2656 -4.9850 -2.4736 17 7 2.7537 -7.1446 -2.2960 18 6 3.4260 -7.1444 -3.5977 19 6 2.4432 -7.5321 -4.7229 20 6 3.2661 -8.3335 -5.7088 21 6 3.0123 -8.6641 -7.0295 22 6 3.9229 -9.4167 -7.7449 23 6 5.0921 -9.8414 -7.1415 24 6 5.3469 -9.5126 -5.8246 25 6 4.4345 -8.7588 -5.1054 26 6 4.4766 -8.2729 -3.6724 27 6 1.8037 -3.6283 -0.3085 28 1 -0.4850 0.8400 -0.0004 29 1 -0.2242 -1.5177 1.4438 30 1 -1.4094 -3.6298 1.8442 31 1 -0.5638 -5.7283 0.8805 32 1 1.4786 -6.8386 -0.1331 33 1 2.7060 -7.9614 -1.7749 34 1 3.8834 -6.1750 -3.7955 35 1 1.6325 -8.1415 -4.3235 36 1 2.0446 -6.6377 -5.2017 37 1 2.0993 -8.3324 -7.5016 38 1 3.7219 -9.6733 -8.7745 39 1 5.8052 -10.4304 -7.6993 40 1 6.2607 -9.8444 -5.3541 41 1 5.4664 -7.8839 -3.4339 42 1 4.2138 -9.0810 -2.9897 43 1 2.7026 -3.6309 -0.9072 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001218104816.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:15:46 Heat of formation + Delta-G solvation = 17.727784 kcal Electronic energy + Delta-G solvation = -25289.886753 eV Core-core repulsion = 21685.162724 eV Total energy + Delta-G solvation = -3604.724028 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.58972 -39.62421 -37.44815 -36.16366 -34.33247 -33.27058 -32.66735 -31.63757 -29.75586 -28.73498 -27.51504 -27.37750 -25.23731 -22.94545 -21.75270 -21.19088 -20.93711 -20.66666 -20.03601 -18.08216 -17.56346 -16.58674 -16.07941 -15.77788 -15.35609 -15.23301 -14.78718 -14.68808 -14.42962 -13.97420 -13.53066 -13.49333 -13.08860 -13.08121 -12.98155 -12.81171 -12.60188 -12.14254 -11.78939 -11.56067 -11.42844 -11.27177 -11.25453 -11.07419 -10.99729 -10.58457 -10.44603 -10.13189 -9.70315 -9.54936 -9.19322 -9.02768 -8.94962 -8.86494 -8.70837 -7.36009 -6.81704 -6.60851 -4.28950 1.12970 1.17387 2.75956 2.88046 3.04006 3.14008 3.20197 3.24452 3.53187 3.71274 4.02480 4.20640 4.34476 4.60761 4.73890 4.79529 4.80806 4.88208 4.99647 5.02473 5.29554 5.39029 5.47790 5.60248 5.67874 5.76656 5.86203 5.93967 6.00188 6.20272 6.27503 6.28727 6.43497 6.43912 6.60540 6.77918 6.82113 6.83629 7.09505 7.15310 7.30808 7.39774 7.74107 7.86512 8.04764 8.16203 8.31094 8.47344 8.72945 8.95696 9.02979 9.08999 10.32406 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.018225 B = 0.002466 C = 0.002290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.024005 B =11353.966269 C =12226.110097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.802 5.802 2 C 0.073 3.927 3 Si 0.911 3.089 4 H -0.261 1.261 5 H -0.275 1.275 6 H -0.273 1.273 7 C -0.456 4.456 8 H 0.076 0.924 9 C 0.118 3.882 10 C -0.169 4.169 11 C -0.094 4.094 12 C -0.260 4.260 13 C 0.167 3.833 14 N -0.681 5.681 15 C 0.697 3.303 16 O -0.561 6.561 17 N -0.743 5.743 18 C 0.168 3.832 19 C -0.098 4.098 20 C -0.087 4.087 21 C -0.108 4.108 22 C -0.120 4.120 23 C -0.124 4.124 24 C -0.106 4.106 25 C -0.096 4.096 26 C -0.088 4.088 27 C -0.207 4.207 28 H 0.278 0.722 29 H 0.121 0.879 30 H 0.091 0.909 31 H 0.088 0.912 32 H 0.394 0.606 33 H 0.393 0.607 34 H 0.106 0.894 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.120 0.880 38 H 0.122 0.878 39 H 0.122 0.878 40 H 0.120 0.880 41 H 0.083 0.917 42 H 0.085 0.915 43 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.981 -18.556 -8.537 21.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.428 5.428 2 C -0.144 4.144 3 Si 0.735 3.265 4 H -0.185 1.185 5 H -0.200 1.200 6 H -0.199 1.199 7 C -0.487 4.487 8 H 0.094 0.906 9 C 0.115 3.885 10 C -0.189 4.189 11 C -0.113 4.113 12 C -0.282 4.282 13 C 0.075 3.925 14 N -0.327 5.327 15 C 0.398 3.602 16 O -0.435 6.435 17 N -0.400 5.400 18 C 0.062 3.938 19 C -0.137 4.137 20 C -0.087 4.087 21 C -0.126 4.126 22 C -0.138 4.138 23 C -0.142 4.142 24 C -0.124 4.124 25 C -0.097 4.097 26 C -0.125 4.125 27 C -0.229 4.229 28 H 0.089 0.911 29 H 0.139 0.861 30 H 0.109 0.891 31 H 0.106 0.894 32 H 0.227 0.773 33 H 0.227 0.773 34 H 0.124 0.876 35 H 0.103 0.897 36 H 0.102 0.898 37 H 0.138 0.862 38 H 0.140 0.860 39 H 0.140 0.860 40 H 0.138 0.862 41 H 0.102 0.898 42 H 0.103 0.897 43 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 6.869 -17.421 -9.160 20.847 hybrid contribution 0.106 -0.190 0.263 0.342 sum 6.975 -17.611 -8.897 20.928 Atomic orbital electron populations 1.69814 1.07396 1.28737 1.36863 1.25880 0.94826 1.01168 0.92480 0.86226 0.80841 0.81010 0.78390 1.18508 1.20045 1.19864 1.19569 0.95970 0.90398 1.42729 0.90571 1.17520 0.91425 0.91719 0.87829 1.21399 0.98934 0.96618 1.01899 1.20462 0.98336 0.92845 0.99686 1.20024 0.99022 0.97401 1.11750 1.17220 0.94076 0.84049 0.97170 1.42588 1.60924 1.10104 1.19133 1.15987 0.78998 0.83714 0.81519 1.91007 1.62838 1.31179 1.58503 1.45111 1.62027 1.11332 1.21486 1.21327 0.91176 0.99780 0.81505 1.21565 0.98011 0.99602 0.94506 1.20582 0.95895 0.98101 0.94170 1.20676 0.99793 0.98838 0.93252 1.21045 0.94434 0.98515 0.99800 1.21018 0.97581 1.00719 0.94886 1.20604 0.98906 0.98596 0.94255 1.20436 0.95121 0.98370 0.95724 1.21292 1.00279 0.97788 0.93164 1.21000 1.03192 0.91856 1.06829 0.91145 0.86103 0.89059 0.89383 0.77301 0.77323 0.87599 0.89736 0.89802 0.86151 0.85962 0.85979 0.86236 0.89805 0.89662 0.87451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.55 10.81 55.55 0.60 -20.95 16 2 C 0.07 1.90 5.25 -17.34 -0.09 1.81 16 3 Si 0.91 19.55 29.57 -169.99 -5.03 14.52 16 4 H -0.26 -5.56 7.11 56.52 0.40 -5.16 16 5 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 6 H -0.27 -5.69 7.11 56.52 0.40 -5.28 16 7 C -0.46 -12.73 9.06 -37.74 -0.34 -13.08 16 8 H 0.08 2.07 7.87 -52.49 -0.41 1.66 16 9 C 0.12 3.30 5.55 -106.85 -0.59 2.70 16 10 C -0.17 -4.49 8.66 -38.84 -0.34 -4.82 16 11 C -0.09 -2.22 10.02 -39.69 -0.40 -2.62 16 12 C -0.26 -5.77 9.97 -39.10 -0.39 -6.16 16 13 C 0.17 3.82 6.26 -83.76 -0.52 3.29 16 14 N -0.68 -12.12 5.35 -14.27 -0.08 -12.20 16 15 C 0.70 12.61 8.29 -86.92 -0.72 11.89 16 16 O -0.56 -13.04 13.70 5.29 0.07 -12.97 16 17 N -0.74 -9.27 5.14 -57.28 -0.29 -9.56 16 18 C 0.17 2.01 3.45 -66.50 -0.23 1.78 16 19 C -0.10 -1.14 6.49 -26.85 -0.17 -1.32 16 20 C -0.09 -0.94 6.14 -104.21 -0.64 -1.58 16 21 C -0.11 -1.06 10.04 -39.53 -0.40 -1.46 16 22 C -0.12 -1.04 10.05 -39.62 -0.40 -1.44 16 23 C -0.12 -1.03 10.05 -39.63 -0.40 -1.43 16 24 C -0.11 -0.94 10.04 -39.54 -0.40 -1.34 16 25 C -0.10 -0.96 6.14 -104.21 -0.64 -1.60 16 26 C -0.09 -0.80 6.48 -26.84 -0.17 -0.97 16 27 C -0.21 -5.45 8.39 -38.69 -0.32 -5.77 16 28 H 0.28 6.77 8.30 -40.82 -0.34 6.43 16 29 H 0.12 3.30 6.18 -52.48 -0.32 2.98 16 30 H 0.09 1.90 8.06 -52.49 -0.42 1.47 16 31 H 0.09 1.68 8.06 -52.49 -0.42 1.26 16 32 H 0.39 5.28 8.83 -40.82 -0.36 4.92 16 33 H 0.39 3.51 8.44 -40.82 -0.34 3.17 16 34 H 0.11 1.52 7.54 -51.93 -0.39 1.13 16 35 H 0.08 0.94 8.08 -51.93 -0.42 0.52 16 36 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 38 H 0.12 0.79 8.06 -52.49 -0.42 0.36 16 39 H 0.12 0.73 8.06 -52.48 -0.42 0.31 16 40 H 0.12 0.83 8.06 -52.48 -0.42 0.41 16 41 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.09 0.63 7.80 -51.93 -0.41 0.23 16 43 H 0.11 2.93 6.44 -52.48 -0.34 2.59 16 LS Contribution 360.34 15.07 5.43 5.43 Total: -1.00 -32.75 360.34 -11.98 -44.73 By element: Atomic # 1 Polarization: 18.63 SS G_CDS: -5.51 Total: 13.12 kcal Atomic # 6 Polarization: -14.95 SS G_CDS: -7.17 Total: -22.11 kcal Atomic # 7 Polarization: -42.94 SS G_CDS: 0.23 Total: -42.71 kcal Atomic # 8 Polarization: -13.04 SS G_CDS: 0.07 Total: -12.97 kcal Atomic # 14 Polarization: 19.55 SS G_CDS: -5.03 Total: 14.52 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -32.75 -11.98 -44.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001218104816.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.454 kcal (2) G-P(sol) polarization free energy of solvation -32.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.726 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds