Wall clock time and date at job start Tue Mar 31 2020 13:15:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30831 * 1 3 3 Si 1.86797 * 120.00017 * 2 1 4 4 H 1.48499 * 109.47395 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47018 * 299.99898 * 3 2 1 6 6 H 1.48503 * 109.47040 * 59.99465 * 3 2 1 7 7 C 1.39932 * 120.00187 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00151 * 168.99448 * 7 2 1 9 9 C 1.41410 * 120.00084 * 348.99727 * 7 2 1 10 10 C 1.40773 * 120.21171 * 331.77923 * 9 7 2 11 11 C 1.37636 * 119.88698 * 179.97438 * 10 9 7 12 12 C 1.38527 * 120.32130 * 0.02562 * 11 10 9 13 13 C 1.39246 * 120.43110 * 0.02562 * 12 11 10 14 14 N 1.39957 * 119.95038 * 179.97438 * 13 12 11 15 15 C 1.34777 * 120.00012 * 146.37955 * 14 13 12 16 16 O 1.21589 * 119.99708 * 354.82715 * 15 14 13 17 17 N 1.34771 * 119.99771 * 174.81713 * 15 14 13 18 18 C 1.46511 * 119.99667 * 180.27824 * 17 15 14 19 19 C 1.54347 * 110.82253 * 267.69848 * 18 17 15 20 20 C 1.51371 * 105.16778 * 215.43073 * 19 18 17 21 21 C 1.38494 * 130.38437 * 197.19267 * 20 19 18 22 22 C 1.38111 * 120.21171 * 179.97438 * 21 20 19 23 23 C 1.38251 * 119.93227 * 359.97438 * 22 21 20 24 24 C 1.38099 * 119.93582 * 0.02562 * 23 22 21 25 25 C 1.38218 * 109.76151 * 17.18730 * 20 19 18 26 26 C 1.51367 * 109.75650 * 0.02562 * 25 20 19 27 27 C 1.38274 * 120.10040 * 0.23087 * 13 12 11 28 28 H 0.96995 * 119.99953 * 0.02562 * 1 2 3 29 29 H 1.08003 * 120.05553 * 0.02562 * 10 9 7 30 30 H 1.08002 * 119.84023 * 179.97438 * 11 10 9 31 31 H 1.07999 * 119.78786 * 179.97438 * 12 11 10 32 32 H 0.96995 * 120.00207 * 326.38873 * 14 13 12 33 33 H 0.96999 * 120.00522 * 0.02562 * 17 15 14 34 34 H 1.08995 * 110.72751 * 31.32403 * 18 17 15 35 35 H 1.09005 * 110.30022 * 334.35122 * 19 18 17 36 36 H 1.08999 * 110.30431 * 96.50203 * 19 18 17 37 37 H 1.08000 * 119.89660 * 359.97438 * 21 20 19 38 38 H 1.07997 * 120.02912 * 179.97438 * 22 21 20 39 39 H 1.08004 * 120.02712 * 179.97438 * 23 22 21 40 40 H 1.08006 * 119.89073 * 180.02562 * 24 23 22 41 41 H 1.08994 * 110.30381 * 223.88726 * 26 25 20 42 42 H 1.09003 * 110.38357 * 101.77735 * 26 25 20 43 43 H 1.08003 * 120.15781 * 179.73273 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.7023 1.3464 0.0006 5 1 1.8836 2.3964 -1.2125 6 1 1.8834 2.3965 1.2125 7 6 2.0080 -1.2118 0.0005 8 1 3.0731 -1.2205 -0.1780 9 6 1.3205 -2.4251 0.2348 10 6 0.1514 -2.4369 1.0189 11 6 -0.5127 -3.6216 1.2422 12 6 -0.0361 -4.8036 0.6994 13 6 1.1196 -4.8075 -0.0773 14 7 1.5925 -6.0076 -0.6203 15 6 2.2061 -6.0088 -1.8203 16 8 2.2656 -4.9850 -2.4736 17 7 2.7537 -7.1446 -2.2960 18 6 3.4260 -7.1444 -3.5977 19 6 2.4432 -7.5321 -4.7229 20 6 3.2661 -8.3335 -5.7088 21 6 3.0123 -8.6641 -7.0295 22 6 3.9229 -9.4167 -7.7449 23 6 5.0921 -9.8414 -7.1415 24 6 5.3469 -9.5126 -5.8246 25 6 4.4345 -8.7588 -5.1054 26 6 4.4766 -8.2729 -3.6724 27 6 1.8037 -3.6283 -0.3085 28 1 -0.4850 0.8400 -0.0004 29 1 -0.2242 -1.5177 1.4438 30 1 -1.4094 -3.6298 1.8442 31 1 -0.5638 -5.7283 0.8805 32 1 1.4786 -6.8386 -0.1331 33 1 2.7060 -7.9614 -1.7749 34 1 3.8834 -6.1750 -3.7955 35 1 1.6325 -8.1415 -4.3235 36 1 2.0446 -6.6377 -5.2017 37 1 2.0993 -8.3324 -7.5016 38 1 3.7219 -9.6733 -8.7745 39 1 5.8052 -10.4304 -7.6993 40 1 6.2607 -9.8444 -5.3541 41 1 5.4664 -7.8839 -3.4339 42 1 4.2138 -9.0810 -2.9897 43 1 2.7026 -3.6309 -0.9072 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001218104816.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:15:45 Heat of formation + Delta-G solvation = -1.286362 kcal Electronic energy + Delta-G solvation = -25290.711268 eV Core-core repulsion = 21685.162724 eV Total energy + Delta-G solvation = -3605.548544 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.70498 -40.81997 -39.15075 -37.26014 -36.11227 -34.91279 -33.99192 -32.35199 -31.72316 -30.12888 -28.67401 -28.29934 -27.22917 -24.12642 -22.99865 -22.68726 -21.98268 -21.82435 -21.54143 -19.63464 -19.29482 -17.64144 -17.34220 -17.07018 -16.64152 -16.43606 -16.28160 -16.16542 -15.80728 -15.42438 -14.88106 -14.72150 -14.35526 -14.22785 -13.97364 -13.87169 -13.77175 -13.64093 -13.41076 -13.10613 -12.84493 -12.65151 -12.50418 -12.19954 -12.16192 -12.12744 -11.98423 -11.69435 -11.56882 -11.31552 -11.05645 -10.70965 -10.18321 -9.72332 -9.44469 -9.34045 -8.66642 -8.55211 -6.36721 0.42279 0.47231 0.94069 1.03711 1.36170 1.48670 1.51880 1.64217 2.16963 2.23012 2.77884 2.83617 3.23408 3.38778 3.62408 3.76146 4.03149 4.06313 4.13241 4.18811 4.28573 4.48832 4.61627 4.65302 4.67933 4.69830 4.84254 4.85149 4.89006 5.07607 5.13522 5.15144 5.16363 5.19060 5.22737 5.35499 5.45486 5.58065 5.61895 5.69741 5.74345 5.84957 6.07869 6.10942 6.14162 6.20147 6.39483 6.71683 6.96856 7.02803 7.11995 7.61016 8.38989 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.018225 B = 0.002466 C = 0.002290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.024005 B =11353.966269 C =12226.110097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.833 5.833 2 C 0.031 3.969 3 Si 0.985 3.015 4 H -0.263 1.263 5 H -0.267 1.267 6 H -0.257 1.257 7 C -0.500 4.500 8 H 0.064 0.936 9 C 0.086 3.914 10 C -0.194 4.194 11 C -0.093 4.093 12 C -0.247 4.247 13 C 0.175 3.825 14 N -0.668 5.668 15 C 0.695 3.305 16 O -0.617 6.617 17 N -0.715 5.715 18 C 0.164 3.836 19 C -0.093 4.093 20 C -0.110 4.110 21 C -0.123 4.123 22 C -0.124 4.124 23 C -0.124 4.124 24 C -0.111 4.111 25 C -0.106 4.106 26 C -0.075 4.075 27 C -0.233 4.233 28 H 0.287 0.713 29 H 0.106 0.894 30 H 0.124 0.876 31 H 0.133 0.867 32 H 0.419 0.581 33 H 0.416 0.584 34 H 0.074 0.926 35 H 0.090 0.910 36 H 0.058 0.942 37 H 0.124 0.876 38 H 0.144 0.856 39 H 0.149 0.851 40 H 0.142 0.858 41 H 0.092 0.908 42 H 0.110 0.890 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.391 -21.257 -8.519 24.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.460 5.460 2 C -0.182 4.182 3 Si 0.806 3.194 4 H -0.186 1.186 5 H -0.192 1.192 6 H -0.181 1.181 7 C -0.530 4.530 8 H 0.082 0.918 9 C 0.083 3.917 10 C -0.214 4.214 11 C -0.112 4.112 12 C -0.268 4.268 13 C 0.081 3.919 14 N -0.316 5.316 15 C 0.396 3.604 16 O -0.496 6.496 17 N -0.372 5.372 18 C 0.058 3.942 19 C -0.131 4.131 20 C -0.110 4.110 21 C -0.141 4.141 22 C -0.142 4.142 23 C -0.142 4.142 24 C -0.129 4.129 25 C -0.106 4.106 26 C -0.112 4.112 27 C -0.255 4.255 28 H 0.097 0.903 29 H 0.124 0.876 30 H 0.142 0.858 31 H 0.151 0.849 32 H 0.257 0.743 33 H 0.254 0.746 34 H 0.092 0.908 35 H 0.108 0.892 36 H 0.076 0.924 37 H 0.142 0.858 38 H 0.162 0.838 39 H 0.167 0.833 40 H 0.159 0.841 41 H 0.111 0.889 42 H 0.128 0.872 43 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 7.284 -20.233 -9.126 23.361 hybrid contribution -0.042 0.440 0.176 0.476 sum 7.241 -19.793 -8.950 22.898 Atomic orbital electron populations 1.69864 1.08696 1.30163 1.37235 1.26738 0.95733 1.04361 0.91415 0.85119 0.79058 0.76121 0.79097 1.18637 1.19211 1.18125 1.19761 0.95746 0.92040 1.45484 0.91809 1.17868 0.92557 0.92468 0.88803 1.21358 0.99482 0.97485 1.03091 1.20846 0.98845 0.92200 0.99262 1.20464 0.98065 0.98668 1.09621 1.17265 0.93671 0.84693 0.96256 1.42304 1.60514 1.09637 1.19186 1.16199 0.78801 0.84220 0.81224 1.90987 1.64754 1.33801 1.60050 1.44811 1.60203 1.10504 1.21641 1.21343 0.92131 0.99683 0.81066 1.21428 0.98214 0.98826 0.94655 1.20581 0.96529 0.99172 0.94720 1.20891 1.00613 0.99422 0.93181 1.21363 0.94240 0.97813 1.00799 1.21407 0.97739 1.00171 0.94876 1.20914 0.99331 0.98067 0.94574 1.20584 0.95118 0.98861 0.96074 1.21205 0.99392 0.97067 0.93530 1.20947 1.03452 0.93314 1.07797 0.90281 0.87634 0.85810 0.84883 0.74274 0.74622 0.90781 0.89192 0.92374 0.85760 0.83799 0.83342 0.84062 0.88941 0.87163 0.89780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -46.31 10.81 21.82 0.24 -46.07 16 2 C 0.03 1.66 5.25 85.25 0.45 2.11 16 3 Si 0.99 41.33 29.57 68.60 2.03 43.36 16 4 H -0.26 -10.91 7.11 99.48 0.71 -10.21 16 5 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 6 H -0.26 -10.02 7.11 99.48 0.71 -9.32 16 7 C -0.50 -29.65 9.06 23.46 0.21 -29.43 16 8 H 0.06 3.75 7.87 -2.91 -0.02 3.73 16 9 C 0.09 5.04 5.55 -21.31 -0.12 4.92 16 10 C -0.19 -10.63 8.66 22.75 0.20 -10.43 16 11 C -0.09 -4.27 10.02 22.20 0.22 -4.05 16 12 C -0.25 -10.37 9.97 22.58 0.23 -10.14 16 13 C 0.18 7.94 6.26 38.09 0.24 8.18 16 14 N -0.67 -22.87 5.35 -317.33 -1.70 -24.57 16 15 C 0.70 25.19 8.29 179.06 1.49 26.68 16 16 O -0.62 -30.12 13.70 -4.00 -0.05 -30.17 16 17 N -0.71 -17.09 5.14 -453.41 -2.33 -19.42 16 18 C 0.16 3.91 3.45 45.91 0.16 4.07 16 19 C -0.09 -2.20 6.49 30.52 0.20 -2.00 16 20 C -0.11 -2.34 6.14 -19.59 -0.12 -2.46 16 21 C -0.12 -2.36 10.04 22.30 0.22 -2.14 16 22 C -0.12 -1.91 10.05 22.24 0.22 -1.69 16 23 C -0.12 -1.72 10.05 22.24 0.22 -1.50 16 24 C -0.11 -1.69 10.04 22.30 0.22 -1.46 16 25 C -0.11 -1.96 6.14 -19.60 -0.12 -2.08 16 26 C -0.07 -1.22 6.48 30.52 0.20 -1.02 16 27 C -0.23 -12.83 8.39 22.85 0.19 -12.64 16 28 H 0.29 14.31 8.30 -92.71 -0.77 13.54 16 29 H 0.11 6.01 6.18 -2.91 -0.02 5.99 16 30 H 0.12 4.82 8.06 -2.91 -0.02 4.80 16 31 H 0.13 4.41 8.06 -2.91 -0.02 4.39 16 32 H 0.42 9.91 8.83 -92.71 -0.82 9.09 16 33 H 0.42 6.27 8.44 -92.71 -0.78 5.49 16 34 H 0.07 2.28 7.54 -2.39 -0.02 2.26 16 35 H 0.09 1.97 8.08 -2.38 -0.02 1.95 16 36 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 37 H 0.12 2.14 8.06 -2.91 -0.02 2.12 16 38 H 0.14 1.50 8.06 -2.91 -0.02 1.47 16 39 H 0.15 1.23 8.06 -2.91 -0.02 1.21 16 40 H 0.14 1.48 8.06 -2.91 -0.02 1.45 16 41 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 42 H 0.11 1.26 7.80 -2.39 -0.02 1.24 16 43 H 0.08 4.93 6.44 -2.91 -0.02 4.91 16 Total: -1.00 -76.89 360.34 1.95 -74.94 By element: Atomic # 1 Polarization: 37.56 SS G_CDS: -0.55 Total: 37.01 kcal Atomic # 6 Polarization: -39.39 SS G_CDS: 4.31 Total: -35.08 kcal Atomic # 7 Polarization: -86.27 SS G_CDS: -3.79 Total: -90.06 kcal Atomic # 8 Polarization: -30.12 SS G_CDS: -0.05 Total: -30.17 kcal Atomic # 14 Polarization: 41.33 SS G_CDS: 2.03 Total: 43.36 kcal Total: -76.89 1.95 -74.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001218104816.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.652 kcal (2) G-P(sol) polarization free energy of solvation -76.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds