Wall clock time and date at job start Tue Mar 31 2020 13:18:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86807 * 120.00053 * 2 1 4 4 H 1.48497 * 109.46919 * 274.99127 * 3 2 1 5 5 H 1.48500 * 109.46760 * 34.98445 * 3 2 1 6 6 H 1.48500 * 109.47192 * 154.98715 * 3 2 1 7 7 C 1.39924 * 120.00247 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00517 * 151.92711 * 7 2 1 9 9 C 1.41412 * 120.00047 * 331.92882 * 7 2 1 10 10 C 1.40777 * 120.20712 * 337.88012 * 9 7 2 11 11 C 1.37644 * 119.88377 * 179.97438 * 10 9 7 12 12 C 1.38532 * 120.32444 * 359.73787 * 11 10 9 13 13 C 1.39257 * 120.42543 * 0.52101 * 12 11 10 14 14 N 1.39937 * 119.94606 * 179.76303 * 13 12 11 15 15 C 1.34779 * 119.99735 * 321.01372 * 14 13 12 16 16 O 1.21283 * 120.00150 * 354.72575 * 15 14 13 17 17 C 1.50707 * 119.99532 * 174.44669 * 15 14 13 18 18 H 1.09001 * 109.78633 * 40.28116 * 17 15 14 19 19 C 1.53430 * 109.79582 * 279.47958 * 17 15 14 20 20 C 1.52838 * 108.85916 * 177.30547 * 19 17 15 21 21 C 1.50594 * 110.53440 * 51.22965 * 20 19 17 22 22 C 1.38498 * 118.93602 * 159.59229 * 21 20 19 23 23 C 1.38123 * 120.30702 * 179.49572 * 22 21 20 24 24 C 1.38310 * 120.16551 * 0.06371 * 23 22 21 25 25 C 1.38024 * 119.90689 * 0.08624 * 24 23 22 26 26 C 1.38608 * 121.50114 * 339.34171 * 21 20 19 27 27 N 1.39922 * 120.84128 * 0.58172 * 26 21 20 28 28 C 1.38282 * 120.10304 * 359.48058 * 13 12 11 29 29 H 0.96999 * 119.99850 * 359.97438 * 1 2 3 30 30 H 1.07998 * 120.06017 * 359.94973 * 10 9 7 31 31 H 1.08004 * 119.83944 * 180.02562 * 11 10 9 32 32 H 1.08000 * 119.78888 * 180.25362 * 12 11 10 33 33 H 0.96996 * 119.99825 * 141.02097 * 14 13 12 34 34 H 1.09004 * 109.57300 * 297.05697 * 19 17 15 35 35 H 1.09002 * 109.57395 * 57.43000 * 19 17 15 36 36 H 1.08995 * 109.25239 * 290.92205 * 20 19 17 37 37 H 1.09002 * 109.14288 * 171.46501 * 20 19 17 38 38 H 1.08008 * 119.84544 * 359.50874 * 22 21 20 39 39 H 1.08002 * 119.91660 * 180.02562 * 23 22 21 40 40 H 1.07991 * 120.04467 * 180.11247 * 24 23 22 41 41 H 1.07997 * 119.98717 * 179.97438 * 25 24 23 42 42 H 0.96993 * 120.54256 * 166.36513 * 27 26 21 43 43 H 1.08001 * 120.16231 * 180.23534 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.3843 2.1073 -1.3948 5 1 1.4964 2.6200 0.8028 6 1 3.5886 1.4121 0.5920 7 6 2.0080 -1.2117 -0.0005 8 1 2.9926 -1.2666 -0.4407 9 6 1.4257 -2.3647 0.5752 10 6 0.4021 -2.2380 1.5333 11 6 -0.1603 -3.3647 2.0891 12 6 0.2722 -4.6239 1.7063 13 6 1.2876 -4.7644 0.7637 14 7 1.7201 -6.0412 0.3880 15 6 1.8269 -7.0157 1.3129 16 8 1.6410 -6.7629 2.4845 17 6 2.1712 -8.4208 0.8906 18 1 2.9322 -8.3956 0.1105 19 6 0.9145 -9.1290 0.3680 20 6 1.3002 -10.5264 -0.1163 21 6 2.0821 -11.2558 0.9441 22 6 2.1554 -12.6378 0.8910 23 6 2.8735 -13.3348 1.8431 24 6 3.5238 -12.6562 2.8577 25 6 3.4534 -11.2791 2.9199 26 6 2.7302 -10.5752 1.9629 27 7 2.6682 -9.1799 2.0461 28 6 1.8650 -3.6445 0.1940 29 1 -0.4850 0.8400 0.0004 30 1 0.0589 -1.2585 1.8321 31 1 -0.9459 -3.2667 2.8238 32 1 -0.1780 -5.5021 2.1450 33 1 1.9431 -6.2247 -0.5379 34 1 0.1813 -9.2110 1.1704 35 1 0.4912 -8.5588 -0.4590 36 1 1.9083 -10.4396 -1.0166 37 1 0.3945 -11.0877 -0.3461 38 1 1.6488 -13.1731 0.1014 39 1 2.9268 -14.4125 1.7954 40 1 4.0862 -13.2029 3.6000 41 1 3.9604 -10.7479 3.7118 42 1 2.9485 -8.7213 2.8536 43 1 2.6499 -3.7525 -0.5399 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001218988323.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:18:03 Heat of formation + Delta-G solvation = 6.379399 kcal Electronic energy + Delta-G solvation = -25492.691274 eV Core-core repulsion = 21887.475143 eV Total energy + Delta-G solvation = -3605.216131 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.60634 -39.42832 -37.41871 -36.06927 -34.57819 -33.50548 -33.15648 -30.84609 -29.92404 -29.58937 -28.32812 -25.55943 -25.24502 -23.57673 -22.55251 -21.73779 -20.99264 -20.06502 -19.51582 -17.90616 -17.70056 -16.73290 -16.37041 -15.57623 -15.55077 -15.12163 -14.93059 -14.64186 -14.55798 -14.13209 -13.89464 -13.58945 -13.41316 -13.16943 -12.97959 -12.89788 -12.58928 -12.33156 -11.94575 -11.72252 -11.47814 -11.45415 -11.24289 -11.13318 -10.87539 -10.74887 -10.59537 -10.26502 -10.12643 -9.80739 -9.50146 -9.29185 -8.92224 -8.82387 -7.57020 -7.49441 -7.04747 -6.91577 -4.39545 1.29786 1.51620 2.42145 2.75928 2.96004 3.04034 3.07288 3.15113 3.30948 3.64501 3.75229 3.88281 4.47291 4.52257 4.63773 4.75532 4.80920 4.93916 4.99560 5.11528 5.24906 5.39118 5.45604 5.47787 5.62032 5.67600 5.80505 5.91011 5.99744 6.17984 6.22931 6.41079 6.45952 6.52410 6.63067 6.73494 6.85577 6.93761 6.96805 7.13673 7.20977 7.50437 7.58664 7.68350 7.87525 7.95487 8.03769 8.21932 8.44862 8.59202 8.81442 8.90007 10.05503 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.034988 B = 0.002235 C = 0.002225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.080766 B =12526.363063 C =12580.205086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.777 5.777 2 C 0.085 3.915 3 Si 0.899 3.101 4 H -0.270 1.270 5 H -0.274 1.274 6 H -0.259 1.259 7 C -0.468 4.468 8 H 0.080 0.920 9 C 0.125 3.875 10 C -0.174 4.174 11 C -0.090 4.090 12 C -0.229 4.229 13 C 0.156 3.844 14 N -0.661 5.661 15 C 0.505 3.495 16 O -0.516 6.516 17 C 0.139 3.861 18 H 0.088 0.912 19 C -0.127 4.127 20 C -0.068 4.068 21 C -0.159 4.159 22 C -0.076 4.076 23 C -0.179 4.179 24 C -0.079 4.079 25 C -0.190 4.190 26 C 0.225 3.775 27 N -0.731 5.731 28 C -0.247 4.247 29 H 0.283 0.717 30 H 0.110 0.890 31 H 0.091 0.909 32 H 0.095 0.905 33 H 0.401 0.599 34 H 0.078 0.922 35 H 0.085 0.915 36 H 0.074 0.926 37 H 0.079 0.921 38 H 0.118 0.882 39 H 0.116 0.884 40 H 0.119 0.881 41 H 0.120 0.880 42 H 0.410 0.590 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.551 -19.118 -1.133 19.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.401 5.401 2 C -0.136 4.136 3 Si 0.723 3.277 4 H -0.195 1.195 5 H -0.199 1.199 6 H -0.182 1.182 7 C -0.497 4.497 8 H 0.098 0.902 9 C 0.121 3.879 10 C -0.194 4.194 11 C -0.109 4.109 12 C -0.250 4.250 13 C 0.065 3.935 14 N -0.306 5.306 15 C 0.290 3.710 16 O -0.391 6.391 17 C 0.029 3.971 18 H 0.106 0.894 19 C -0.166 4.166 20 C -0.105 4.105 21 C -0.163 4.163 22 C -0.094 4.094 23 C -0.199 4.199 24 C -0.098 4.098 25 C -0.212 4.212 26 C 0.122 3.878 27 N -0.363 5.363 28 C -0.268 4.268 29 H 0.093 0.907 30 H 0.128 0.872 31 H 0.110 0.890 32 H 0.113 0.887 33 H 0.236 0.764 34 H 0.096 0.904 35 H 0.103 0.897 36 H 0.093 0.907 37 H 0.097 0.903 38 H 0.136 0.864 39 H 0.134 0.866 40 H 0.137 0.863 41 H 0.138 0.862 42 H 0.248 0.752 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 3.122 -18.706 -0.461 18.970 hybrid contribution 0.531 0.900 -0.157 1.057 sum 3.653 -17.806 -0.617 18.187 Atomic orbital electron populations 1.69893 1.07909 1.29691 1.32601 1.25903 0.94468 1.01421 0.91774 0.86452 0.81276 0.80847 0.79121 1.19523 1.19909 1.18232 1.19474 1.02933 0.92787 1.34480 0.90227 1.17332 0.90088 0.91158 0.89274 1.21187 1.01429 0.97040 0.99745 1.20525 0.98824 0.92667 0.98928 1.20159 1.02367 0.96544 1.05964 1.17371 0.95421 0.81806 0.98949 1.43410 1.65952 1.10104 1.11111 1.20421 0.77965 0.86206 0.86430 1.90737 1.48406 1.82453 1.17490 1.20934 0.97292 0.89245 0.89606 0.89393 1.21842 0.96396 0.96213 1.02144 1.20288 0.99397 0.94426 0.96425 1.19318 1.03703 0.93823 0.99498 1.20830 0.97789 0.92725 0.98089 1.20823 1.02394 0.99479 0.97166 1.20844 0.97885 0.93458 0.97565 1.20684 1.04389 0.94579 1.01584 1.17568 0.92942 0.83120 0.94165 1.44537 1.72077 1.02471 1.17265 1.20661 1.06823 0.91399 1.07930 0.90658 0.87189 0.89042 0.88727 0.76418 0.90355 0.89684 0.90747 0.90263 0.86356 0.86629 0.86325 0.86205 0.75184 0.88652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.59 11.48 55.55 0.64 -18.96 16 2 C 0.08 2.08 4.90 -17.35 -0.09 1.99 16 3 Si 0.90 18.13 29.64 -169.99 -5.04 13.09 16 4 H -0.27 -5.33 7.11 56.52 0.40 -4.92 16 5 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 6 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 7 C -0.47 -12.13 8.99 -37.74 -0.34 -12.47 16 8 H 0.08 1.98 7.98 -52.49 -0.42 1.56 16 9 C 0.12 3.26 5.57 -106.85 -0.60 2.67 16 10 C -0.17 -4.52 8.75 -38.84 -0.34 -4.86 16 11 C -0.09 -2.17 10.02 -39.69 -0.40 -2.57 16 12 C -0.23 -5.37 8.66 -39.09 -0.34 -5.70 16 13 C 0.16 3.43 6.15 -83.76 -0.52 2.91 16 14 N -0.66 -11.17 5.32 -9.91 -0.05 -11.22 16 15 C 0.50 8.29 6.79 -10.98 -0.07 8.21 16 16 O -0.52 -10.56 14.14 5.55 0.08 -10.48 16 17 C 0.14 1.70 3.32 -68.63 -0.23 1.47 16 18 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 19 C -0.13 -1.36 5.40 -26.59 -0.14 -1.50 16 20 C -0.07 -0.62 5.77 -28.02 -0.16 -0.79 16 21 C -0.16 -1.73 5.76 -104.44 -0.60 -2.33 16 22 C -0.08 -0.73 9.66 -39.53 -0.38 -1.11 16 23 C -0.18 -1.67 10.04 -39.60 -0.40 -2.07 16 24 C -0.08 -0.76 10.05 -39.63 -0.40 -1.16 16 25 C -0.19 -2.09 9.88 -39.35 -0.39 -2.48 16 26 C 0.23 2.71 6.48 -83.72 -0.54 2.17 16 27 N -0.73 -9.31 5.45 -52.77 -0.29 -9.60 16 28 C -0.25 -5.85 9.71 -38.68 -0.38 -6.23 16 29 H 0.28 6.43 8.30 -40.82 -0.34 6.09 16 30 H 0.11 2.90 6.38 -52.49 -0.33 2.57 16 31 H 0.09 1.98 8.06 -52.48 -0.42 1.56 16 32 H 0.09 2.18 6.82 -52.49 -0.36 1.82 16 33 H 0.40 5.29 8.83 -40.82 -0.36 4.93 16 34 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.08 0.62 8.12 -51.93 -0.42 0.20 16 38 H 0.12 0.88 8.06 -52.48 -0.42 0.46 16 39 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 40 H 0.12 0.89 8.06 -52.49 -0.42 0.46 16 41 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 42 H 0.41 5.51 7.97 -40.82 -0.33 5.19 16 43 H 0.10 2.09 8.06 -52.49 -0.42 1.66 16 LS Contribution 358.56 15.07 5.40 5.40 Total: -1.00 -29.95 358.56 -11.15 -41.09 By element: Atomic # 1 Polarization: 20.09 SS G_CDS: -5.58 Total: 14.51 kcal Atomic # 6 Polarization: -17.54 SS G_CDS: -6.30 Total: -23.84 kcal Atomic # 7 Polarization: -40.08 SS G_CDS: 0.30 Total: -39.78 kcal Atomic # 8 Polarization: -10.56 SS G_CDS: 0.08 Total: -10.48 kcal Atomic # 14 Polarization: 18.13 SS G_CDS: -5.04 Total: 13.09 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -29.95 -11.15 -41.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001218988323.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.471 kcal (2) G-P(sol) polarization free energy of solvation -29.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.092 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds